Disulfide structure of the leucine-rich repeat C-terminal cap and C-terminal stalk region of Nogo-66 receptor.

Abstract:

:Nogo-66 receptor (NgR1) is a leucine-rich repeat (LRR) protein that forms part of a signaling complex modulating axon regeneration. Previous studies have shown that the entire LRR region of NgR1, including the C-terminal cap of the LRR, LRRCT, is needed for ligand binding, and that the adjacent C-terminal region (CT stalk) of the NgR1 contributes to interaction with its coreceptors. To provide structure-based information for these interactions, we analyzed the disulfide structure of full-length NgR1. Our analysis revealed a novel disulfide structure in the C-terminal region of the NgR1, wherein the two Cys residues, Cys-335 and Cys-336, in the CT stalk are disulfide-linked to Cys-266 and Cys-309 in the LRRCT region: Cys-266 is linked to Cys-335, and Cys-309 to Cys-336. The other two Cys residues, Cys-264 and Cys-287, in the LRRCT region are disulfide-linked to each other. The analysis also showed that Cys-419 and Cys-429, in the CT stalk region, are linked to each other by a disulfide bond. Although published crystal structures of a recombinant fragment of NgR1 had revealed a disulfide linkage between Cys-266 and Cys-309 in the LRRCT region and we verified its presence in the corresponding fragment, this is artificially caused by the truncation of the protein, since this linkage was not detected in intact NgR1 or a slightly larger fragment containing Cys-335 and Cys-336. A structural model of the LRRCT with extended residues 311-344 from the CT stalk region is proposed, and its function in coreceptor binding is discussed.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Wen D,Wildes CP,Silvian L,Walus L,Mi S,Lee DH,Meier W,Pepinsky RB

doi

10.1021/bi0517483

subject

Has Abstract

pub_date

2005-12-20 00:00:00

pages

16491-501

issue

50

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

杂志文章
  • Biogenesis of the secretory granule: chromogranin A coiled-coil structure results in unusual physical properties and suggests a mechanism for granule core condensation.

    abstract::The secretory pro-hormone chromogranin A (CHGA) is densely packed into storage granules along with catecholamines, playing a catalytic role in granule biogenesis. 3-Dimensional structural data on CHGA are lacking. We found a superfamily structural homology for CHGA in the tropomyosin family of alpha-helical coiled-coi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700704r

    authors: Mosley CA,Taupenot L,Biswas N,Taulane JP,Olson NH,Vaingankar SM,Wen G,Schork NJ,Ziegler MG,Mahata SK,O'Connor DT

    更新日期:2007-09-25 00:00:00

  • Thermal behavior of proteins: heat-resistant proteins and their heat-induced secondary structural changes.

    abstract::Most proteins are denatured by heat treatment, and the process is usually irreversible. However, some proteins, such as hyperthermophilic proteins are known to be stable even at the boiling temperature of water. We here describe a systematic investigation of thermal behavior of proteins by purifying and characterizing...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001441y

    authors: Kim TD,Ryu HJ,Cho HI,Yang CH,Kim J

    更新日期:2000-12-05 00:00:00

  • Cholesterol-mediated conformational changes in the steroidogenic acute regulatory protein are essential for steroidogenesis.

    abstract::Although the mechanism by which the steroidogenic acute regulatory protein (StAR) promotes steroidogenesis has been studied extensively, it remains incompletely characterized. Because structural analysis has revealed a hydrophobic sterol-binding pocket (SBP) within StAR, this study sought to examine the regulatory rol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401125v

    authors: Rajapaksha M,Kaur J,Bose M,Whittal RM,Bose HS

    更新日期:2013-10-15 00:00:00

  • Interaction between SecA and SecYEG in micellar solution and formation of the membrane-inserted state.

    abstract::Preprotein translocation in Escherichia coli is mediated by the translocase with SecA as peripheral ATPase and SecY, SecE, and SecG as membrane domain. To facilitate large-scale purification of the SecYEG heterotrimer, SecY was fused at its amino terminus with a hexahistidine tag and co-overexpressed with SecE and Sec...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972105t

    authors: van der Does C,Manting EH,Kaufmann A,Lutz M,Driessen AJ

    更新日期:1998-01-06 00:00:00

  • Interaction of the pore-forming domain of colicin A with phospholipid vesicles.

    abstract::The interaction of the 20-kDa pore-forming domain of colicin A with phospholipid vesicles was investigated by gel permeation chromatography, analytical centrifugation, and electron microscopy. Under the experimental conditions of this study, this peptide was found to interact only with vesicles containing negatively c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00445a029

    authors: Massotte D,Dasseux JL,Sauve P,Cyrklaff M,Leonard K,Pattus F

    更新日期:1989-09-19 00:00:00

  • Chemical modification of alpha-subunit tryptophan residues in Schizosaccharomyces pombe mitochondrial F1 adenosine 5'-triphosphatase: differential reactivity and role in activity.

    abstract::Chemical modification of mitochondrial F1-ATPase from Schizosaccharomyces pombe by the tryptophan-specific reagent N-bromosuccinimide (NBS) at pH 5.0 in the presence of 20% glycerol produced a characteristic lowering in both enzyme absorbance at 280 nm and intrinsic fluorescence at 332 nm that varied with NBS/F1 molar...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00055a004

    authors: Divita G,Jault JM,Gautheron DC,Di Pietro A

    更新日期:1993-02-02 00:00:00

  • Atomic force microscopy imaging reveals the domain structure of polycystin-1.

    abstract::Mutation of polycystin-1 (PC1) is the major cause of autosomal dominant polycystic kidney disease. PC1 has a predicted molecular mass of ~460 kDa comprising a long multidomain extracellular N-terminal region, 11 transmembrane regions, and a short C-terminal region. Because of its size, PC1 has proven difficult to hand...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300134b

    authors: Oatley P,Stewart AP,Sandford R,Edwardson JM

    更新日期:2012-04-03 00:00:00

  • Electrostatic control of the rate-determining step of the copper, zinc superoxide dismutase catalytic reaction.

    abstract::The dependence of the activity of bovine Cu,Zn superoxide dismutase on pH and ionic strength was extensively investigated in the ranges of pH 7.4-pH 12.3 and of ionic strength of 0.02-0.25 M. The results obtained indicate that two positively charged groups having pK values of approximately 10.1 and 10.8 are involved i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00385a043

    authors: Argese E,Viglino P,Rotilio G,Scarpa M,Rigo A

    更新日期:1987-06-02 00:00:00

  • Identification of basic amino acid residues important for citrate binding by the periplasmic receptor domain of the sensor kinase CitA.

    abstract::The sensor kinase CitA and the response regulator CitB of Klebsiella pneumoniae form the paradigm of a subfamily of bacterial two-component regulatory systems that are capable of sensing tri- or dicarboxylates in the environment and then induce transporters for the uptake of these compounds. We recently showed that th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0340595

    authors: Gerharz T,Reinelt S,Kaspar S,Scapozza L,Bott M

    更新日期:2003-05-20 00:00:00

  • Inhibitors of the molybdenum cofactor containing 4-hydroxybenzoyl-CoA reductase.

    abstract::4-Hydroxybenzoyl-CoA reductase (4-HBCR) is a member of the xanthine oxidase (XO) family of molybdenum cofactor containing enzymes and catalyzes the irreversible removal of a phenolic hydroxy group by reduction, yielding benzoyl-CoA and water. In this work the effects of various activity modulating compounds were chara...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800137v

    authors: Johannes J,Unciuleac MC,Friedrich T,Warkentin E,Ermler U,Boll M

    更新日期:2008-04-29 00:00:00

  • Protein Synthesis with Ribosomes Selected for the Incorporation of β-Amino Acids.

    abstract::In an earlier study, β³-puromycin was used for the selection of modified ribosomes, which were utilized for the incorporation of five different β-amino acids into Escherichia coli dihydrofolate reductase (DHFR). The selected ribosomes were able to incorporate structurally disparate β-amino acids into DHFR, in spite of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00389

    authors: Maini R,Chowdhury SR,Dedkova LM,Roy B,Daskalova SM,Paul R,Chen S,Hecht SM

    更新日期:2015-06-16 00:00:00

  • A quantitative index of substrate promiscuity.

    abstract::Catalytic promiscuity is a widespread, but poorly understood, phenomenon among enzymes with particular relevance to the evolution of new functions, drug metabolism, and in vitro biocatalyst engineering. However, there is at present no way to quantitatively measure or compare this important parameter of enzyme function...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701448p

    authors: Nath A,Atkins WM

    更新日期:2008-01-08 00:00:00

  • Expression and Purification of ZASP Subdomains and Clinically Important Isoforms: High-Affinity Binding to G-Actin.

    abstract::Z-disc-associated, alternatively spliced, PDZ motif-containing protein (ZASP) is a principal component of the sarcomere. The three prevalent isoforms of ZASP in skeletal muscle are generated by alternative splicing of exons 9 and 10. The long isoforms, either having (ZASP-L) or lacking exon 10 (ZASP-LΔex10), include a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00067

    authors: Watts NR,Zhuang X,Kaufman JD,Palmer IW,Dearborn AD,Coscia S,Blech-Hermoni Y,Alfano C,Pastore A,Mankodi A,Wingfield PT

    更新日期:2017-04-11 00:00:00

  • Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: facile electron transfer between substrates.

    abstract::Substrates homoprotocatechuate (HPCA) and O(2) bind to the Fe(II) of homoprotocatechuate 2,3-dioxygenase (FeHPCD) in adjacent coordination sites. Transfer of an electron(s) from HPCA to O(2) via the iron is proposed to activate the substrates for reaction with each other to initiate aromatic ring cleavage. Here, rapid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201436n

    authors: Mbughuni MM,Chakrabarti M,Hayden JA,Meier KK,Dalluge JJ,Hendrich MP,Münck E,Lipscomb JD

    更新日期:2011-11-29 00:00:00

  • Motility of dimeric ncd on a metal-chelating surfactant: evidence that ncd is not processive.

    abstract::The surface immobilization methods that allowed single-molecule motility experiments with native kinesin have not worked with the ncd motor protein and other kinesin-related motors. To solve this problem, a surfactant (Pluronic F108) was chemically modified with the metal-chelating group nitrilotriacetic acid (NTA) to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9829175

    authors: deCastro MJ,Ho CH,Stewart RJ

    更新日期:1999-04-20 00:00:00

  • Mapping the functional domains of elongation factor-2 kinase.

    abstract::A new class of eukaryotic protein kinases that are not homologous to members of the serine/threonine/tyrosine protein kinase superfamily was recently identified [Futey, L. M., et al. (1995) J. Biol. Chem. 270, 523-529; Ryazanov, A. G., et al. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 4884-4889]. This class includes euk...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0007270

    authors: Pavur KS,Petrov AN,Ryazanov AG

    更新日期:2000-10-10 00:00:00

  • Effect of removing the amino-terminal hexapeptide of tropomyosin on the properties of the thin filament.

    abstract::The role of the amino-terminal region of alpha-striated muscle tropomyosin has been analyzed by reconstituting thin filaments with a version of the protein lacking the first six amino acids. While Omp T-digested tropomyosin (residues 7-284) does not bind significantly to F-actin at micromolar concentrations, an intera...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802004j

    authors: Goonasekara CL,Heeley DH

    更新日期:2009-04-21 00:00:00

  • Membrane glycopeptides from virus-transformed hamster fibroblasts and the normal counterpart.

    abstract::Comparisons of membrane glycopeptides from baby hamster kidney fibroblasts (BHK21/C13) and a clone transformed by Rous sarcoma virus (C13/B4) were made by using cells metabolically labeled with radioactive D-glucose and L-fucose. Most of the glycopeptides were metabolically labeled with both the general and the specif...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00579a015

    authors: Glick MC

    更新日期:1979-06-12 00:00:00

  • Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR.

    abstract::The human double-stranded RNA- (dsRNA) activated protein kinase (PKR) has a dsRNA-binding domain (dsRBD) that contains two tandem copies of the dsRNA-binding motif (dsRBM). The minimal-length polypeptide required to bind dsRNA contains both dsRBMs, as determined by mobility-shift and filter-binding assays. Mobility-sh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9607259

    authors: Bevilacqua PC,Cech TR

    更新日期:1996-08-06 00:00:00

  • Site-directed mutagenesis and molecular modeling identify a crucial amino acid in specifying the heparin affinity of FGF-1.

    abstract::Heparin potentiates the mitogenic activity of FGF-1 by increasing the affinity for its receptor and by extending its biological half-life. During the course of labeling human FGF-1 with Na(125)I and chloramine T, it was observed that the protein lost its ability to bind to heparin. In contrast, bovine FGF-1 retained i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9903345

    authors: Patrie KM,Botelho MJ,Franklin K,Chiu IM

    更新日期:1999-07-20 00:00:00

  • Histidine residues at the N- and C-termini of alpha-helices: perturbed pKas and protein stability.

    abstract::A single histidine residue has been placed at either the N-terminus or the C-terminus of each of the two alpha-helices of barnase. The pKa of that histidine residue in each of the four mutants has been determined by 1H NMR. The pKas of the two residues at the C-terminus are, on average, 0.5 unit higher, and those of t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00123a006

    authors: Sancho J,Serrano L,Fersht AR

    更新日期:1992-03-03 00:00:00

  • Substrate-induced changes in the dynamics of rhodopsin kinase (G protein-coupled receptor kinase 1).

    abstract::G protein-coupled receptor (GPCR) kinases (GRKs) instigate the desensitization of activated GPCRs via phosphorylation that promotes interaction with arrestins, thereby preventing the interaction of GPCRs with heterotrimeric G proteins. A current proposed model of GRK1 activation involves the binding of activated rhodo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300295y

    authors: Orban T,Huang CC,Homan KT,Jastrzebska B,Tesmer JJ,Palczewski K

    更新日期:2012-04-24 00:00:00

  • Significance of the nongenomic, inflammatory pathway in mediating the toxic action of TCDD to induce rapid and long-term cellular responses in 3T3-L1 adipocytes.

    abstract::TCDD (dioxin) induces a rapid inflammatory response from 3T3-L1 adipocytes as judged by prominent induction of the mRNA expression of prostaglandin-endperoxide synthase 2 (Cox-2) along with other inflammation markers within 1 h. This action of TCDD is clearly antagonized by cell pretreatment with AACOCF3 (an inhibitor...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801913w

    authors: Li W,Matsumura F

    更新日期:2008-12-30 00:00:00

  • Limited proteolysis and biophysical characterization of the lipovitellin homology region in apolipoprotein B.

    abstract::Apolipoprotein B (apoB) is the essential nonexchangeable protein in chylomicrons and very low-density lipoprotein-derived lipoprotein particles, including low-density lipoprotein (LDL). ApoB has been a key target for cardiovascular research because of its essential role in the assembly, secretion, delivery, and recept...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048286y

    authors: Jiang ZG,Carraway M,McKnight CJ

    更新日期:2005-02-01 00:00:00

  • Carbohydrate chains of human thyrotropin are differentially susceptible to endoglycosidase removal on combined and free polypeptide subunits.

    abstract::The accessibility of the asparagine-linked carbohydrate chains of human thyrotropin (hTSH) and free alpha and beta subunits was investigated by their susceptibility to endoglycosidases H and F as well as to peptide:N-glycosidase F. Iodinated hTSH or subunits were incubated with a commercial enzyme preparation containi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00392a040

    authors: Ronin C,Papandreou MJ,Canonne C,Weintraub BD

    更新日期:1987-09-08 00:00:00

  • Interaction of tRNAs and of phosphorothioate-substituted nucleic acids with an organomercurial. Probing the chemical environment of thiolated residues by affinity electrophoresis.

    abstract::The interactions of 4-thiouridine and 5-[(methylamino)methyl]-2-thiouridine in tRNA and of phosphorothioate esters in nucleic acids with an organomercurial have been investigated. For this purpose, an affinity electrophoretic system has been developed in which the mercury derivative has been covalently immobilized in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00410a048

    authors: Igloi GL

    更新日期:1988-05-17 00:00:00

  • Identification of potential regulatory sites of the Na+,K+-ATPase by kinetic analysis.

    abstract::Kinetic models are presented that allow the Na(+),K(+)-ATPase steady-state turnover number to be estimated at given intra- and extracellular concentrations of Na(+), K(+), and ATP. Based on experimental transient kinetic data, the models utilize either three or four steps of the Albers-Post scheme, that is, E(2) --> E...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0355443

    authors: Kong BY,Clarke RJ

    更新日期:2004-03-02 00:00:00

  • Human aldose reductase: subtle effects revealed by rapid kinetic studies of the C298A mutant enzyme.

    abstract::Transient kinetic data for D-xylose reduction with NADPH and NADPD and for xylitol oxidation with NADP+ catalyzed by recombinant C298A mutant human aldose reductase at pH 8 have been used to obtain estimates for each of the rate constants in the complete reaction mechanism as outlined for the wild-type enzyme in the p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00044a013

    authors: Grimshaw CE,Bohren KM,Lai CJ,Gabbay KH

    更新日期:1995-11-07 00:00:00

  • Electrophoretic mobilities and diffusion coefficients of hemoglobin at high pH.

    abstract::Diffusion studies by photon correlation of scattered laser light confirm the dissociation of the tetrameric form of human carboxyhemoglobin to dimers above pH 10 and provide new estimates of the subunit dissociation equilibrium constants in this pH range. Electrophoretic light-scattering experiments under the same con...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00616a014

    authors: Haas DD,Ware BR

    更新日期:1978-11-14 00:00:00

  • Light inhibition of bovine retinal rod guanylyl cyclase mediated by beta gamma-transducin.

    abstract::Photoreceptor guanylyl cyclase (ROS-GC), converting GTP into cGMP and pyrophosphate, is a key enzyme in the regulation of the visual transduction cascade. ROS-GC requires GC-activating proteins (GCAPs) and low free [Ca] for full activity. We found that when choline or potassium were the major cations present, light ca...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9825596

    authors: Wolbring G,Baehr W,Palczewski K,Schnetkamp PP

    更新日期:1999-03-02 00:00:00