Expression and Purification of ZASP Subdomains and Clinically Important Isoforms: High-Affinity Binding to G-Actin.

Abstract:

:Z-disc-associated, alternatively spliced, PDZ motif-containing protein (ZASP) is a principal component of the sarcomere. The three prevalent isoforms of ZASP in skeletal muscle are generated by alternative splicing of exons 9 and 10. The long isoforms, either having (ZASP-L) or lacking exon 10 (ZASP-LΔex10), include an N-terminal PDZ domain, an actin-binding region (ABR) with a conserved motif (ZM), and three C-terminal LIM domains. The short isoform (ZASP-S) lacks the LIM domains. Mutations, A147T and A165V, within the ZM of ZASP-LΔex10 cause myofibrillar myopathy, but the mechanism is unknown. We have prepared these proteins, their ABR, and the respective mutant variants in recombinant form, characterized them biophysically, and analyzed their actin-binding properties by surface plasmon resonance and electron microscopy. All the proteins were physically homogeneous and monomeric and had circular dichroic spectra consistent with partially folded conformations. Comparison of the NMR HSQC spectra of ZASP-S and the PDZ domain showed that the ABR is unstructured. ZASP-S and its mutant variants and ZASP-LΔex10 all bound to immobilized G-actin with high affinity (Kd ≈ 10-8 to 10-9 M). Constructs of the isolated actin-binding region missing exon 10 (ABRΔ10) bound with lower affinity (Kd ≈ 10-7 M), but those retaining exon 10 (ABR+10) did so only weakly (Kd ≈ 10-5 M). ZASP-S, and the ABRΔ10, also induced F-actin and array formation, even in conditions of low ionic strength and in the absence of KCl and Mg2+ ions. Interestingly, the ZM mutations A147T and A165V did not affect any of the results described above.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Watts NR,Zhuang X,Kaufman JD,Palmer IW,Dearborn AD,Coscia S,Blech-Hermoni Y,Alfano C,Pastore A,Mankodi A,Wingfield PT

doi

10.1021/acs.biochem.7b00067

subject

Has Abstract

pub_date

2017-04-11 00:00:00

pages

2061-2070

issue

14

eissn

0006-2960

issn

1520-4995

journal_volume

56

pub_type

杂志文章
  • Resonance raman analysis of chromophore structure in the lumi-R photoproduct of phytochrome.

    abstract::Resonance Raman vibrational spectra of the Pr, lumi-R, and Pfr forms of phytochrome have been obtained using low-temperature trapping and room temperature flow techniques in conjunction with shifted-excitation Raman difference spectroscopy (SERDS). The Pr to lumi-R photoconversion exhibits a thermal barrier and is com...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962175k

    authors: Andel F 3rd,Lagarias JC,Mathies RA

    更新日期:1996-12-17 00:00:00

  • Thermodynamics of glycophorin in phospholipid bilayer membranes.

    abstract::We have developed a model of glycophorin in a phospholipid bilayer membrane in order to study the thermodynamics of this system and to understand the detailed behavior of recent calorimetric data. We assume that the larger glycophorin polar group can be considered as either adopting a pancakelike conformation at the b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00381a019

    authors: MacDonald AL,Pink DA

    更新日期:1987-04-07 00:00:00

  • Heme-CO religation in photolyzed hemoglobin: a time-resolved Raman study of the Fe-CO stretching mode.

    abstract::Time-resolved resonance Raman spectroscopy has been employed to monitor geminate heme-CO rebinding in photolyzed HbCO. The excitation frequency was tuned to enhance the scattering from rebound heme sites 20-500 ns subsequent to CO photolysis. The behavior of vFe-C during ligand rebinding has important ramifications co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00056a017

    authors: Schneebeck MC,Vigil LE,Friedman JM,Chavez MD,Ondrias MR

    更新日期:1993-02-09 00:00:00

  • Effect of base, pentose, and phosphodiester backbone structures on binding and repair of pyrimidine dimers by Escherichia coli DNA photolyase.

    abstract::Photolyases reverse the effects of UV light on cells by converting cyclobutane dipyrimidine photoproducts (pyrimidine dimers, Pyr mean value of Pyr) into pyrimidine monomers in a light-dependent reaction. Previous work has suggested that, based on substrate preference, there are two classes of photolyase: DNA photolya...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00099a019

    authors: Kim ST,Sancar A

    更新日期:1991-09-03 00:00:00

  • Post-Translational Modifications in Polypyrimidine Tract Binding Proteins PTBP1 and PTBP2.

    abstract::RNA binding proteins play an important role in regulating alternative pre-mRNA splicing and in turn cellular gene expression. Many of these RNA binding proteins occur as gene families with members sharing a high degree of primary structure identity and domain organization yet have tissue-specific expression patterns a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00256

    authors: Pina JM,Reynaga JM,Truong AAM,Keppetipola NM

    更新日期:2018-07-03 00:00:00

  • Simulation-based prediction of phosphatidylinositol 4,5-bisphosphate binding to an ion channel.

    abstract::Protein-lipid interactions regulate many membrane protein functions. Using a multiscale approach that combines coarse-grained and atomistic molecular dynamics simulations, we have predicted the binding site for the anionic phospholipid phosphatidylinositol 4,5-bisphosphate (PIP(2)) on the Kir2.2 inwardly rectifying (K...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301350s

    authors: Schmidt MR,Stansfeld PJ,Tucker SJ,Sansom MS

    更新日期:2013-01-15 00:00:00

  • MerR cross-links to the alpha, beta, and sigma 70 subunits of RNA polymerase in the preinitiation complex at the merTPCAD promoter.

    abstract::MerR, the metalloregulator of the mercury resistance (mer) operon, binds the operator (merO)between -10 and -35 of the merTPCAD promoter (PT) and sequesters RNA polymerase (RNAP) in a closed complex. MerR represses PT until Hg(II) induces it to underwind merO DNA and thus facilitate open complex formation. We used cro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982814m

    authors: Kulkarni RD,Summers AO

    更新日期:1999-03-16 00:00:00

  • "Dilysine trigger" in transferrins probed by mutagenesis of lactoferrin: crystal structures of the R210G, R210E, and R210L mutants of human lactoferrin.

    abstract::The mammalian iron-binding proteins lactoferrin (Lf) and transferrin (Tf) bind iron very tightly, but reversibly. Despite homologous structures and essentially identical iron binding sites, Tf begins to release iron at pH 6.0, whereas Lf retains iron to pH approximately 3.5. This difference in iron retention gives the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020443a

    authors: Peterson NA,Arcus VL,Anderson BF,Tweedie JW,Jameson GB,Baker EN

    更新日期:2002-12-03 00:00:00

  • Secretin receptor oligomers form intracellularly during maturation through receptor core domains.

    abstract::Oligomerization of numerous G protein-coupled receptors has been documented, including the prototypic family B secretin receptor. The clinical significance of oligomerization of this receptor became clear with the recent observation that a misspliced form present in pancreatic cancer could associate with the wild-type...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060494y

    authors: Lisenbee CS,Miller LJ

    更新日期:2006-07-11 00:00:00

  • Does the structure of the water-oxidizing photosystem II-manganese complex at room temperature differ from its low-temperature structure? A comparative X-ray absorption study.

    abstract::Detailed information on room-temperature structure and oxidation state of the Photosystem II (PS II) manganese complex is needed to put mechanistic considerations on solid grounds. Because previously this information had not been available, the tetranuclear manganese complex was investigated by X-ray absorption spectr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9924258

    authors: Meinke C,Solé VA,Pospisil P,Dau H

    更新日期:2000-06-20 00:00:00

  • Molecular characterization of limulin, a sialic acid binding lectin from the hemolymph of the horseshoe crab, Limulus polyphemus.

    abstract::The sialic acid binding lectin, limulin, was isolated by gel filtration and ion-exchange chromatography from the hemolymph of Limulus polyphemus. When the purified protein was characterized by sodium dodecyl sulfate-polyacrylamide gel electrophoresis in the presence of beta-mercaptoethanol, two major protein bands wer...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00638a026

    authors: Kaplan R,Li SS,Kehoe JM

    更新日期:1977-09-20 00:00:00

  • A new subfamily of agmatinases present in methanogenic Archaea is Fe(II) dependent.

    abstract::Here we report that the Methanocaldococcus jannaschii enzyme derived from the MJ0309 gene is an Fe(II) dependent agmatinase (SpeB). This is the first report of an iron-dependent agmatinase. We demonstrate that aerobically isolated recombinant enzyme contains two disulfide bonds and only a trace amount of any metal and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300039f

    authors: Miller D,Xu H,White RH

    更新日期:2012-04-10 00:00:00

  • Effect of the carbohydrate moiety on the secondary structure of beta 2-glycoprotein. I. Implications for the biosynthesis and folding of glycoproteins.

    abstract::By use of six highly purified exoglycosidases with well-defined specificity, the oligosaccharide units of human plasma beta 2-glycoprotein I (beta 2I) were modified by sequential enzymatic degradation. The released monosaccharides (NeuAc, Gal, GlcNAc, and Man) were quantified, and the carbohydrate compositions of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00478a020

    authors: Walsh MT,Watzlawick H,Putnam FW,Schmid K,Brossmer R

    更新日期:1990-07-03 00:00:00

  • Activity of one of two engineered heterodimers of AhpF, the NADH:peroxiredoxin oxidoreductase from Salmonella typhimurium, reveals intrasubunit electron transfer between domains.

    abstract::AhpF, the flavoprotein reductase component of the Salmonella typhimurium alkyl hydroperoxide reductase system, catalyzes the reduction of an intersubunit disulfide bond in the peroxidatic active site of the system's other component, AhpC, a member of the peroxiredoxin family. Previous studies have shown that AhpF can ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002766h

    authors: Reynolds CM,Poole LB

    更新日期:2001-04-03 00:00:00

  • X-ray crystallographic and biochemical characterization of the inhibitory action of an imidazole-dioxolane compound on heme oxygenase.

    abstract::Heme oxygenase (HO) catalyzes the regiospecific cleavage of the porphyrin ring of heme using reducing equivalents and O2 to produce biliverdin, iron, and CO. Because CO has a cytoprotective effect through the p38-MAPK pathway, HO is a potential therapeutic target in cancer. In fact, inhibition of the HO isoform HO-1 r...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi062264p

    authors: Sugishima M,Higashimoto Y,Oishi T,Takahashi H,Sakamoto H,Noguchi M,Fukuyama K

    更新日期:2007-02-20 00:00:00

  • The Cys319 loop modulates the transition between dehydrogenase and hydrolase conformations in inosine 5'-monophosphate dehydrogenase.

    abstract::X-ray crystal structures of enzyme-ligand complexes are widely believed to mimic states in the catalytic cycle, but this presumption has seldom been carefully scrutinized. In the case of Tritrichomonas foetus inosine 5'-monophosphate dehydrogenase (IMPDH), 10 structures of various enzyme-substrate-inhibitor complexes ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101590c

    authors: Josephine HR,Ravichandran KR,Hedstrom L

    更新日期:2010-12-21 00:00:00

  • Characterization of recombinant Saccharomyces cerevisiae manganese-containing superoxide dismutase and its H30A and K170R mutants expressed in Escherichia coli.

    abstract::All known Mn-containing superoxide dismutases (MnSODs) have a highly conserved histidine (His-30 in Escherichia coli FeSOD) in the active-site channel, and nearly all have an active-site arginine (Arg-170) that has been proposed to play a combined structural and functional role [Chan et al., Arch. Biochem. Biophys. 27...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980167t

    authors: Borders CL Jr,Bjerrum MJ,Schirmer MA,Oliver SG

    更新日期:1998-08-11 00:00:00

  • Gene structure of cytochrome P-450(M-1) specifically expressed in male rat liver.

    abstract::Cytochrome P-450(M-1) [P-450(M-1)] is specifically expressed in adult male rat liver [Yoshioka, H., Morohashi, K., Sogawa, K., Miyata, T., Kawajiri, K., Hirose, T., Inayama, S., Fujii-Kuriyama, Y., & Omura, T. (1987) J. Biol. Chem. 262, 1706-1711]. Isolation and analysis of the gene for P-450(M-1) revealed that the co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00399a039

    authors: Morishima N,Yoshioka H,Higashi Y,Sogawa K,Fujii-Kuriyama Y

    更新日期:1987-12-15 00:00:00

  • Purification and characterization of a Ca(2+)-activated thiol protease from Drosophila melanogaster.

    abstract::A Ca(2+)-activated thiol protease was purified from Drosophila melanogaster. The procedure involves Phenyl-Sepharose, Reactive Red-Agarose and Q-Sepharose fast flow (or MonoQ) chromatographic steps. The enzyme eluting from Q-Sepharose fast flow seems to be homogeneous as judged by silver staining on SDS-PAGE: it consi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00150a012

    authors: Pintér M,Stierandova A,Friedrich P

    更新日期:1992-09-08 00:00:00

  • Induction of conductance heterogeneity in gramicidin channels.

    abstract::In previous work from our laboratory, 5-10% of the channels formed by [Val1]gramicidin A have conductances that fall outside the narrow range that conventionally has defined the standard gramicidin channel [e.g., see Russell et al. (1986) Biophys. J. 49, 673]. Reports from other laboratories, however, show that up to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00442a007

    authors: Sawyer DB,Koeppe RE 2nd,Andersen OS

    更新日期:1989-08-08 00:00:00

  • Structural Insight into the Discrimination between 8-Oxoguanine Glycosidic Conformers by DNA Repair Enzymes: A Molecular Dynamics Study of Human Oxoguanine Glycosylase 1 and Formamidopyrimidine-DNA Glycosylase.

    abstract::hOgg1 and FPG are the primary DNA repair enzymes responsible for removing the major guanine (G) oxidative product, namely, 7,8-dihydro-8-oxoguanine (OG), in humans and bacteria, respectively. While natural G adopts the anti conformation and forms a Watson-Crick pair with cytosine (C), OG can also adopt the syn conform...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01292

    authors: Sowlati-Hashjin S,Wetmore SD

    更新日期:2018-02-20 00:00:00

  • Metal ion activator effects on intrinsic isotope effects for hydride transfer from decarboxylation in the reaction catalyzed by the NAD-malic enzyme from Ascaris suum.

    abstract::The mechanism of the oxidative decarboxylation reaction catalyzed by the NAD-malic enzyme from Ascaris suum has been examined with several different divalent metal ion activators and dinucleotide substrates. Primary deuterium and tritium isotope effects have been obtained and, in combination with the partitioning rati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00010a015

    authors: Karsten WE,Gavva SR,Park SH,Cook PF

    更新日期:1995-03-14 00:00:00

  • Identification of critical lysyl residues in the pyrophosphate-dependent phosphofructo-1-kinase of Propionibacterium freudenreichii.

    abstract::Pyrophosphate-dependent 6-phosphofructo-1-kinase (PPi-PFK) from Propionibacterium freudenreichii was inactivated by low concentrations of the lysine-specific reagent pyridoxal phosphate (PLP) after sodium borohydride reduction. The substrates fructose 6-phosphate and fructose 1,6-bisphosphate protected against inactiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00135a011

    authors: Green PC,Latshaw SP,Ladror US,Kemp RG

    更新日期:1992-05-26 00:00:00

  • Expression-activity profiles of cells transfected with prostaglandin endoperoxide H synthase measured by quantitative fluorescence microscopy.

    abstract::Transfection of cos-1 cells with either prostaglandin endoperoxide H synthase-1 (PGHS-1) or -2 (PGHS-2) results in a mixed population of cells containing a diverse range of expressed enzyme. The use of fluorescent substrates and antibodies, in conjunction with fluorescence microscopy, provides the means to quantitate ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00021a034

    authors: Morita I,Smith WL,DeWitt DL,Schindler M

    更新日期:1995-05-30 00:00:00

  • Diepoxybutane cross-links DNA at 5'-GNC sequences.

    abstract::Epoxides are cancer-causing agents chemically analogous to the nitrogen mustards, a family of powerful antitumor drugs. We found that the DNA interstrand cross-linking sequence preference of diepoxybutane is the same as that of the mustard mechlorethamine: 5'-GNC. Therefore, the genomic site of cross-linking alone can...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00059a034

    authors: Millard JT,White MM

    更新日期:1993-03-02 00:00:00

  • Uniform 13C isotope labeling of proteins with sodium acetate for NMR studies: application to human carbonic anhydrase II.

    abstract::Uniform double labeling of proteins for NMR studies can be prohibitively expensive, even with an efficient expression and purification scheme, due largely to the high cost of [13C6, 99%]glucose. We demonstrate here that uniformly (greater than 95%) 13C and 15N double-labeled proteins can be prepared for NMR structure/...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00232a017

    authors: Venters RA,Calderone TL,Spicer LD,Fierke CA

    更新日期:1991-05-07 00:00:00

  • Fluorescence energy transfer between Ca2+ transport ATPase molecules in artificial membranes.

    abstract::The purified ATPase of sarcoplasmic reticulum was covalently labeled with N-iodoacetyl-N'-(5-sulfo-1-naphthyl)ethylenediamine (1,5-IAEDANS) or with iodoacetamidofluorescein (IAF). In reconstituted vesicles containing both types of ATPase molecules fluorescence energy transfer was observed from the IAEDANS (donor) to t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00626a003

    authors: Vanderkooi JM,Ierokomas A,Nakamura H,Martonosi A

    更新日期:1977-04-05 00:00:00

  • Inhibition of peptidyl-prolyl cis/trans isomerase activity by substrate analog structures: thioxo tetrapeptide-4-nitroanilides.

    abstract::The ubiquitous cyclophilins belong to peptidyl-prolyl cis/trans isomerases (PPIases; EC 5.2.1.8). They are able to catalyze the cis/trans isomerization about peptidyl-prolyl amide bonds. The mode of action of human cytosolic cyclophilin (Cyp18cy) has been studied on substrate analog tetrapeptide-4-nitroanilides contai...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00040a012

    authors: Schutkowski M,Wöllner S,Fischer G

    更新日期:1995-10-10 00:00:00

  • A region at the C-terminus of the Escherichia coli global transcription factor FNR negatively mediates its degradation by the ClpXP protease.

    abstract::The anaerobic global regulator FNR from Escherichia coli is a [4Fe-4S](2+) cluster-containing dimer that is inactivated by O(2) through disruption of the Fe-S cluster and conversion to the monomeric apoprotein. It was shown that apo-FNR is subject to ClpXP proteolysis, and two recognition sites, amino acids 5-11 and a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2018688

    authors: Pan Q,Shan Y,Yan A

    更新日期:2012-06-26 00:00:00

  • Tyr266 in the sixth transmembrane domain of the yeast alpha-factor receptor plays key roles in receptor activation and ligand specificity.

    abstract::To identify interactions between Ste2p, a G protein-coupled receptor of the yeast Saccharomyces cerevisiae, and its tridecapeptide ligand, alpha-factor (WHWLQLKPGQPMY), a variety of alpha-factor analogues were used in conjunction with site-directed mutagenesis of a targeted portion of Ste2p transmembrane domain six. A...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026100u

    authors: Lee BK,Lee YH,Hauser M,Son CD,Khare S,Naider F,Becker JM

    更新日期:2002-11-19 00:00:00