A new subfamily of agmatinases present in methanogenic Archaea is Fe(II) dependent.

Abstract:

:Here we report that the Methanocaldococcus jannaschii enzyme derived from the MJ0309 gene is an Fe(II) dependent agmatinase (SpeB). This is the first report of an iron-dependent agmatinase. We demonstrate that aerobically isolated recombinant enzyme contains two disulfide bonds and only a trace amount of any metal and requires the presence of both dithiothreitol (DTT) and 4 equiv of Fe(II) for maximum activity. The DTT activation could be indicative of the presence of a redox system, which would regulate the activity of this as well as other enzymes in the methanogens. Site-directed mutagenesis of the four conserved cysteines C71, C136, C151, and C229 to alanine or serine showed that only the C71 and C151 mutants showed a significant drop in activity indicating that the disulfide bond responsible for regulating activity was likely between C136 and C229. We propose that the C71 and C151 cysteine thiols, produced by the DTT-dependent reduction of their disulfide, are two additional metal binding ligands that alter the metal specificity of the M. jannaschii agmatinase from Mn(II) to Fe(II).

journal_name

Biochemistry

journal_title

Biochemistry

authors

Miller D,Xu H,White RH

doi

10.1021/bi300039f

subject

Has Abstract

pub_date

2012-04-10 00:00:00

pages

3067-78

issue

14

eissn

0006-2960

issn

1520-4995

journal_volume

51

pub_type

杂志文章
  • Toward an understanding of the mechanism of nonphotochemical quenching in green plants.

    abstract::Oxygenic photosynthesis in plants involves highly reactive intermediates and byproducts that can damage the photosynthetic apparatus and other chloroplast constituents. The potential for damage is exacerbated when the amount of absorbed light exceeds the capacity for light energy utilization in photosynthesis, a condi...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0494020

    authors: Holt NE,Fleming GR,Niyogi KK

    更新日期:2004-07-06 00:00:00

  • Inactivation of steroid sulfatase by an active site-directed inhibitor, estrone-3-O-sulfamate.

    abstract::Steroid sulfatases are responsible for the hydrolysis of 3beta-hydroxy steroid sulfates, such as cholesterol and pregnenolone sulfate, and have an important role in regulating the synthesis of estrogenic steroids, from estrone sulfate and dehydroepiandrosterone sulfate, in endocrine-dependent tumors. Although little i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00036a025

    authors: Purohit A,Williams GJ,Howarth NM,Potter BV,Reed MJ

    更新日期:1995-09-12 00:00:00

  • Proton NMR studies of a metallothionein from Neurospora crassa: sequence-specific assignments by NOE measurements in the rotating frame.

    abstract::Sequential 1H NMR assignments of a metallothionein from Neurospora crassa have been accomplished by the combined use of COSY, 2QF-COSY, HOHAHA, and rotating-frame NOE experiments. All potentially observable resonances were assigned except for the epsilon-NH3 group of the C-terminal lysine. 1H NOEs, when observed in th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00433a038

    authors: Malikayil JA,Lerch K,Armitage IM

    更新日期:1989-04-04 00:00:00

  • A 1.9 A crystal structure of the HDV ribozyme precleavage suggests both Lewis acid and general acid mechanisms contribute to phosphodiester cleavage.

    abstract::The hepatitis delta virus (HDV) ribozyme and HDV-like ribozymes are self-cleaving RNAs found throughout all kingdoms of life. These RNAs fold into a double-nested pseudoknot structure and cleave RNA, yielding 2',3'-cyclic phosphate and 5'-hydroxyl termini. The active site nucleotide C75 has a pK(a) shifted >2 pH units...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100670p

    authors: Chen JH,Yajima R,Chadalavada DM,Chase E,Bevilacqua PC,Golden BL

    更新日期:2010-08-10 00:00:00

  • Subunit interactions of tryptophan synthase from Escherichia coli as revealed by binding studies with pyridoxal phosphate analogues.

    abstract::An improved purification procedure for the alpha 2 beta 2 complex of tryptophan synthase from Escherichia coli has been developed. It consists of DEAE-Sephacel chromatography, followed by hydrophobic chromatography on Sepharose CL 4B, and leads to material with a higher specific activity than reported previously. Inhi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00560a020

    authors: Tschopp J,Kirschner K

    更新日期:1980-09-16 00:00:00

  • pH-Dependent Binding of Chloride to a Marine Alkaline Phosphatase Affects the Catalysis, Active Site Stability, and Dimer Equilibrium.

    abstract::The effect of ionic strength on enzyme activity and stability varies considerably between enzymes. Ionic strength is known to affect the catalytic activity of some alkaline phosphatases (APs), such as Escherichia coli AP, but how ions affect APs is debated. Here, we studied the effect of various ions on a cold-adapted...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00690

    authors: Hjörleifsson JG,Ásgeirsson B

    更新日期:2017-09-26 00:00:00

  • Polyisoprenol specificity in the Campylobacter jejuni N-linked glycosylation pathway.

    abstract::Campylobacter jejuni contains a general N-linked glycosylation pathway in which a heptasaccharide is sequentially assembled onto a polyisoprenyl diphosphate carrier and subsequently transferred to the asparagine side chain of an acceptor protein. The enzymes in the pathway function at a membrane interface and have in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701956x

    authors: Chen MM,Weerapana E,Ciepichal E,Stupak J,Reid CW,Swiezewska E,Imperiali B

    更新日期:2007-12-18 00:00:00

  • Structural and thermodynamic basis of affinity in anti-dinitrophenyl antibody.

    abstract::The thermodynamic quantities of the anti-dinitrophenyl antibody-hapten interaction are reported for rabbit, goat, and guinea pig antibodies. Rabbit and goat antibodies had similar exothermic enthalpy changes for their reaction with 2,4-dinitrophenyl-L-lysine (-13.9 and -14.8 kcal/mol, respectively). The enthalpy chang...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00694a032

    authors: Halsey JF,Cebra JJ,Biltonen RL

    更新日期:1975-11-18 00:00:00

  • Calcium ionophore increases amyloid beta peptide production by cultured cells.

    abstract::Amyloid beta peptide (A beta) is released into the media of a variety of cells in culture during normal metabolism. The discovery of several missense mutations within or flanking the A beta region of the beta amyloid precursor protein (beta APP) in familial Alzheimer's disease provides strong evidence for a role of al...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00181a016

    authors: Querfurth HW,Selkoe DJ

    更新日期:1994-04-19 00:00:00

  • Use of a Cholesterol Recognition Amino Acid Consensus Peptide To Inhibit Binding of a Bacterial Toxin to Cholesterol.

    abstract::Recognition of and binding to cholesterol on the host cell membrane is an initial step in the mechanism of numerous pathogens, including viruses, bacteria, and bacterial toxins; however, a viable method of inhibiting this interaction has not yet been uncovered. Here, we describe the mechanism by which a cholesterol re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00430

    authors: Koufos E,Chang EH,Rasti ES,Krueger E,Brown AC

    更新日期:2016-08-30 00:00:00

  • Physical properties of defined lipopolysaccharide salts.

    abstract::The electron spin resonance probes 5-doxylstearate and 4-(dodecyldimethylammonio)-1-oxy-2,2,6,6-tetramethylpiperidine bromide were used to characterize the fluidity of the acyl chain and head-group regions, respectively, of defined salts of lipopolysaccharide (LPS) from Escherichia coli K12. The removal of the weakly ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00277a042

    authors: Coughlin RT,Haug A,McGroarty EJ

    更新日期:1983-04-12 00:00:00

  • Retroviral nucleocapsid protein specifically recognizes the base and the ribose of mononucleotides and mononucleotide components.

    abstract::The interaction of the retroviral nucleocapsid protein (NC) with nucleic acids forms the basis of its varied roles in the replication cycle, which include binding and condensing the viral RNA within the virion, stimulation of the early steps in reverse transcription, and dissociation from RNA in the replication comple...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00126a020

    authors: Secnik J,Gelfand CA,Jentoft JE

    更新日期:1992-03-24 00:00:00

  • Thermal stability of calmodulin and mutants studied by (1)H-(15)N HSQC NMR measurements of selectively labeled [(15)N]Ile proteins.

    abstract::Calmodulin, the Ca(2+)-dependent activator of many cellular processes, contains two well-defined structural domains, each of which binds two Ca(2+) ions. In its Ca(2+)-free (apo) form, it provides an attractive model for studying mechanisms of protein unfolding, exhibiting two separable, reversible processes, indicati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi012187s

    authors: Biekofsky RR,Martin SR,McCormick JE,Masino L,Fefeu S,Bayley PM,Feeney J

    更新日期:2002-05-28 00:00:00

  • Molecular structure of a fibrillar Alzheimer's A beta fragment.

    abstract::Amyloid-beta (Abeta) peptide deposition as fibrillar senile plaques is a key element in the pathology of Alzheimer's disease. Here we present a high-resolution structure of an Abeta amyloid fibril using magnetically aligned preparations of a central Abeta domain which forms representative amyloid fibrils. Diffraction ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000637v

    authors: Serpell LC,Blake CC,Fraser PE

    更新日期:2000-10-31 00:00:00

  • Isolation and characterization of somatolactin, a new protein related to growth hormone and prolactin from Atlantic cod (Gadus morhua) pituitary glands.

    abstract::The characterization of cod somatolactin (SL), a new pituitary protein belonging to the growth hormone/prolactin family, is described. Cod SL has a molecular weight of 26 kDa and consists of 209 amino acids, of which eight are Cys. The protein has three disulfide bonds between residues Cys5-Cys15, Cys65-Cys181, and Cy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00220a010

    authors: Rand-Weaver M,Noso T,Muramoto K,Kawauchi H

    更新日期:1991-02-12 00:00:00

  • Thermodynamics of reversible monomer-dimer association of tubulin.

    abstract::The equilibrium between the rat brain tubulin alpha beta dimer and the dissociated alpha and beta monomers has been studied by analytical ultracentrifugation with use of a new method employing short solution columns, allowing rapid equilibration and hence short runs, minimizing tubulin decay. Simultaneous analysis of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00228a023

    authors: Sackett DL,Lippoldt RE

    更新日期:1991-04-09 00:00:00

  • Resonance Raman investigation of nitric oxide bonding in nitrosylhemoglobin A and -myoglobin: detection of bound N-O stretching and Fe-NO stretching vibrations from the hexacoordinated NO-heme complex.

    abstract::With excitation at 406.7 nm, we have observed the resonance Raman enhancement of the bound v(N-O) stretch at approximately 1623 cm-1 in nitrosylhemoglobin A and nitrosylmyoglobin, indicating the existence of a charge-transfer transition underlying the strong Soret band. The v(Fe-NO) stretch at 551 cm-1 has also been d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00535a005

    authors: Tsubaki M,Yu NT

    更新日期:1982-03-16 00:00:00

  • pH dependence of adenosine 5'-triphosphate synthesis and hydrolysis catalyzed by reconstituted chloroplast coupling factor.

    abstract::The purified ATP-synthesizing complex from chloroplasts has been reconstituted into phospholipid vesicles with bacteriorhodopsin by use of octyl glucoside. Phosphorylation rates up to 90 mmol of ATP (mg of protein)-1 min-1 have been achieved. The dependence of the steady-state kinetic parameters on external and intern...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00527a018

    authors: Takabe T,Hammes GG

    更新日期:1981-11-24 00:00:00

  • Next-Generation Peptide Nucleic Acid Chimeras Exhibit High Affinity and Potent Gene Silencing.

    abstract::We present a new design of mixed-backbone antisense oligonucleotides (ASOs) containing both DNA and peptide nucleic acid (PNA). Previous generations of PNA-DNA chimeras showed low binding affinity, reducing their potential as therapeutics. The addition of a 5'-wing of locked nucleic acid as well as the combination of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00827

    authors: Debacker AJ,Sharma VK,Meda Krishnamurthy P,O'Reilly D,Greenhill R,Watts JK

    更新日期:2019-02-12 00:00:00

  • Estrogen-induced changes in high-energy phosphate metabolism in rat uterus: 31P NMR studies.

    abstract::Changes in the concentrations of high-energy phosphate metabolites were measured by 31P NMR spectroscopy of surviving rat uteri from 0-48 h following estrogen administration. Concentrations (millimoles per kilogram wet weight) of these metabolites in the untreated immature uterus, measured at 4 degrees C, were found t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00307a006

    authors: Degani H,Shaer A,Victor TA,Kaye AM

    更新日期:1984-06-05 00:00:00

  • Circular dichroic and kinetic differentiation of DNA binding modes of distamycin.

    abstract::DNA binding modes of distamycin (DST) were investigated via comparative binding studies with oligomeric duplexes of the form d(GCG-X-GCG).d(CGC-Y-CGC), where Y is complementary to X and X = 4- or 5-base binding site. It was found that 1:1 and 2:1 drug-duplex complexes exhibit distinctly different circular dichroic (CD...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980950l

    authors: Chen FM,Sha F

    更新日期:1998-08-11 00:00:00

  • Some effects of ionophore A23187 on energy utilization and the distribution of cations and anions in mitochondria.

    abstract::The effects of ionophore A23187 on the movements of Ca2+, Mg2+, H+ phosphate, and succinate and its effects on energy utilization by mitochondria have been studied as a function of ionophore concentrations. At a low ratio of the compound to mitochondrial protein, below that required for maximal uncoupling, an apparent...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00657a032

    authors: Pfeiffer DR,Hutson SM,Kauffman RF,Lardy HA

    更新日期:1976-06-15 00:00:00

  • Site-directed alteration of three active-site residues of a pyruvoyl-dependent histidine decarboxylase.

    abstract::The active site of histidine decarboxylase (HDC) from Lactobacillus 30a contains a pyruvoyl cofactor sitting at the interface of two molecules in a trimer. Although exhibiting hyperbolic kinetics at pH 4.8, near its optimum, HDC is cooperative at pH 7.6, indicating that the units of the trimer communicate. A Hill plot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00069a032

    authors: Pishko EJ,Robertus JD

    更新日期:1993-05-11 00:00:00

  • 3'- and 5'-strand cleavage reactions catalyzed by the Fpg protein from Escherichia coli occur via successive beta- and delta-elimination mechanisms, respectively.

    abstract::The Fpg protein from Escherichia coli is a multifunctional protein that excises damaged purine bases from DNA to generate aldehydic abasic sites and then catalyzes the successive cleavage of the phosphodiester bonds first on the 3'-side and then on the 5'-side of the abasic site to generate 5'- and 3'-phosphate ends, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9522662

    authors: Bhagwat M,Gerlt JA

    更新日期:1996-01-16 00:00:00

  • Characterization and purification of the monoamine transporter of bovine chromaffin granules.

    abstract::The monoamine transporter of the chromaffin granule membranes can be specifically labeled by the photoaffinity reagent 7-azido-8-[125I]iodoketanserin. The characteristics of the labeled protein have been investigated. Two-dimensional gel electrophoresis of the labeled membranes indicated a MW of about 70,000 and an is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00122a012

    authors: Isambert MF,Gasnier B,Botton D,Henry JP

    更新日期:1992-02-25 00:00:00

  • Chemical Inhibitors of Epigenetic Methyllysine Reader Proteins.

    abstract::Protein methylation is a common post-translational modification with diverse biological functions. Methyllysine reader proteins are increasingly a focus of epigenetics research and play important roles in regulating many cellular processes. These reader proteins are vital players in development, cell cycle regulation,...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.5b01073

    authors: Milosevich N,Hof F

    更新日期:2016-03-22 00:00:00

  • A bifunctional fusion protein containing Fc-binding fragment B of staphylococcal protein A amino terminal to antidigoxin single-chain Fv.

    abstract::A bifunctional molecule was genetically engineered which contained an amino-terminal effector domain that bound immunoglobulin Fc (fragment B of staphylococcal protein A) and a carboxyl-terminal domain that bound digoxin [a single-chain Fv (sFv)]. Effector and sFv binding properties were virtually identical with those...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00487a005

    authors: Tai MS,Mudgett-Hunter M,Levinson D,Wu GM,Haber E,Oppermann H,Huston JS

    更新日期:1990-09-04 00:00:00

  • Direct sugar binding to LacY measured by resonance energy transfer.

    abstract::Trp151 in the lactose permease of Escherichia coli (LacY) is an important component of the sugar-binding site and the only Trp residue out of six that is in close proximity to the galactopyranoside in the structure (1PV7). The short distance between Trp151 and the sugar is favorable for Förster resonance energy transf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061632m

    authors: Smirnova IN,Kasho VN,Kaback HR

    更新日期:2006-12-26 00:00:00

  • Electron spin echo envelope modulation study of oxygenated iron-cobalt hybrid hemoglobins reveals molecular features analogous to those of the oxy ferrous protein.

    abstract::Two oxygenated iron-cobalt hybrid hemoglobins (Hbs), (alpha Co-O2 beta Fe-O2)2 and (alpha Fe-O2 beta Co-O2)2, were studied by electron spin echo envelope modulation (ESEEM) spectroscopy in order to measure (i) electron-nuclear hyperfine and nuclear quadrupole coupling to the N epsilon of the proximal histidyl imidazol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00020a036

    authors: Lee HC,Peisach J,Tsuneshige A,Yonetani T

    更新日期:1995-05-23 00:00:00

  • Three-dimensional structure of potato carboxypeptidase inhibitor in solution. A study using nuclear magnetic resonance, distance geometry, and restrained molecular dynamics.

    abstract::The solution conformation of potato carboxypeptidase inhibitor (CPI) has been investigated by 1H NMR spectroscopy. The spectrum is assigned in a sequential manner by using two-dimensional NMR techniques to identify through-bond and through-space (less than 5 A) connectivities. A set of 309 approximate interproton dist...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00398a069

    authors: Clore GM,Gronenborn AM,Nilges M,Ryan CA

    更新日期:1987-12-01 00:00:00