Atomic force microscopy imaging reveals the domain structure of polycystin-1.

Abstract:

:Mutation of polycystin-1 (PC1) is the major cause of autosomal dominant polycystic kidney disease. PC1 has a predicted molecular mass of ~460 kDa comprising a long multidomain extracellular N-terminal region, 11 transmembrane regions, and a short C-terminal region. Because of its size, PC1 has proven difficult to handle biochemically, and structural information is consequently sparse. Here we have isolated wild-type PC1, and several mutants, from transfected cells by immunoaffinity chromatography and visualized individual molecules using atomic force microscopy (AFM) imaging. Full-length PC1 appeared as two unequally sized blobs connected by a 35 nm string. The relative sizes of the two blobs suggested that the smaller one represents the N-terminus, including the leucine-rich repeats, the first polycystic kidney disease (PKD) domain, and the C-type lectin motif, while the larger one is the C-terminus, including the receptor for egg jelly (REJ) domain, all transmembrane domains, and the cytoplasmic tail. The intervening string would then consist of a series of tandem PKD domains. The structures of the various PC1 mutants were all consistent with this model. Our results represent the first direct visualization of the structure of PC1, and reveal the architecture of the protein, with intriguing implications for its function.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Oatley P,Stewart AP,Sandford R,Edwardson JM

doi

10.1021/bi300134b

subject

Has Abstract

pub_date

2012-04-03 00:00:00

pages

2879-88

issue

13

eissn

0006-2960

issn

1520-4995

journal_volume

51

pub_type

杂志文章
  • Kinetic study of DNA condensation by cationic peptides used in nonviral gene therapy: analogy of DNA condensation to protein folding.

    abstract::Synthetic nonviral vector systems are attractive because of their apparent simplicity of preparation and use. However, there are many barriers to success at the moment, including the formulation of uniform and reproducible particles of transfection competent, condensed nucleic acids such as plasmid DNA (pDNA). For thi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034325e

    authors: Tecle M,Preuss M,Miller AD

    更新日期:2003-09-09 00:00:00

  • Rhodopsin in dimyristoylphosphatidylcholine-reconstituted bilayers forms metarhodopsin II and activates Gt.

    abstract::The photochemical intermediate metarhodopsin II (meta II; lambda max = 380 nm) is generally identified with rho*, the conformation of photolyzed rhodopsin which binds and activates the visual G-protein, Gt [Emeis, D., & Hoffman, K.P. (1981) FEBS Lett. 136, 201-207]. Purified bovine rhodopsin was incorporated into vesi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00215a006

    authors: Mitchell DC,Kibelbek J,Litman BJ

    更新日期:1991-01-08 00:00:00

  • Insights into the stability of native and partially folded states of ubiquitin: effects of cosolvents and denaturants on the thermodynamics of protein folding.

    abstract::The thermodynamics of the native<-->A state and native<-->unfolded transitions for ubiquitin have been characterized in detail using the denaturants methanol and guanidinium chloride (Gdn.HCl) both separately and in combination. Gdn.HCl destabilizes the partially folded alcohol-induced A state such that the effects of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010767j

    authors: Jourdan M,Searle MS

    更新日期:2001-08-28 00:00:00

  • Hydrogen bond interactions of the pheophytin electron acceptor and its radical anion in photosystem II as revealed by Fourier transform infrared difference spectroscopy.

    abstract::The primary electron acceptor pheophytin (Pheo(D1)) plays a crucial role in regulation of forward and backward electron transfer in photosystem II (PSII). It is known that some cyanobacteria control the Pheo(D1) potential in high-light acclimation by exchanging the D1 proteins from different copies of the psbA genes. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9018829

    authors: Shibuya Y,Takahashi R,Okubo T,Suzuki H,Sugiura M,Noguchi T

    更新日期:2010-01-26 00:00:00

  • Structure-function relationships of curaremimetic neurotoxin loop 2 and of a structurally similar segment of rabies virus glycoprotein in their interaction with the nicotinic acetylcholine receptor.

    abstract::Peptides corresponding to portions of curaremimetic neurotoxin loop 2 and to a structurally similar segment of rabies virus glycoprotein were synthetically modified in order to gain information on structure-function relationships of neurotoxin loop 2 interactions with the acetylcholine receptor. Binding of synthetic p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00109a020

    authors: Lentz TL

    更新日期:1991-11-12 00:00:00

  • Inhibitors of the molybdenum cofactor containing 4-hydroxybenzoyl-CoA reductase.

    abstract::4-Hydroxybenzoyl-CoA reductase (4-HBCR) is a member of the xanthine oxidase (XO) family of molybdenum cofactor containing enzymes and catalyzes the irreversible removal of a phenolic hydroxy group by reduction, yielding benzoyl-CoA and water. In this work the effects of various activity modulating compounds were chara...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800137v

    authors: Johannes J,Unciuleac MC,Friedrich T,Warkentin E,Ermler U,Boll M

    更新日期:2008-04-29 00:00:00

  • A single mutation in cytochrome P450 BM3 changes substrate orientation in a catalytic intermediate and the regiospecificity of hydroxylation.

    abstract::Phenylalanine 87 of Bacillus megaterium cytochrome P450 BM3, a residue close to the heme in the substrate binding pocket, has been replaced by alanine by site-directed mutagenesis. The substitution had no effect on the rate of hydroxylation of laurate and increased the affinity for laurate of both the intact enzyme an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi962826c

    authors: Oliver CF,Modi S,Sutcliffe MJ,Primrose WU,Lian LY,Roberts GC

    更新日期:1997-02-18 00:00:00

  • tRNA topography during translocation: steady-state and kinetic fluorescence energy-transfer studies.

    abstract::The distances between the anticodon loops of fluorescent tRNAPhe bound to the E site and to either the A or the P site of poly(U)-programmed Escherichia coli ribosomes were measured by fluorescence energy transfer. Donor and acceptor molecules were wybutine and proflavin, respectively, both located 3' to the anticodon...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00358a002

    authors: Paulsen H,Wintermeyer W

    更新日期:1986-05-20 00:00:00

  • Major kinetic traps for the oxidative folding of leech carboxypeptidase inhibitor.

    abstract::The leech carboxypeptidase inhibitor (LCI) is a 66-amino acid protein, containing four disulfides that stabilize its structure. This polypeptide represents an excellent model for the study and understanding of the diversity of folding pathways in small, cysteine-rich proteins. The pathway of oxidative folding of LCI h...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034308p

    authors: Salamanca S,Li L,Vendrell J,Aviles FX,Chang JY

    更新日期:2003-06-10 00:00:00

  • Biosynthesis of lipid A in Escherichia coli: identification of UDP-3-O-[(R)-3-hydroxymyristoyl]-alpha-D-glucosamine as a precursor of UDP-N2,O3-bis[(R)-3-hydroxymyristoyl]-alpha-D-glucosamine.

    abstract::The lipid A disaccharide of the Escherichia coli envelope is synthesized from the two fatty acylated glucosamine derivatives UDP-N2,O3-bis[(R)-3-hydroxytetradecanoyl]-alpha-D- glucosamine (UDP-2,3-diacyl-GlcN) and N2,O3-bis[(R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine 1-phosphate (2,3-diacyl-GlcN-1-P) [Ray, B. L., ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00406a017

    authors: Anderson MS,Robertson AD,Macher I,Raetz CR

    更新日期:1988-03-22 00:00:00

  • New insights into the activation of Escherichia coli tyrosine kinase revealed by molecular dynamics simulation and biochemical analysis.

    abstract::Escherichia coli tyrosine kinase (Etk) regulates the export of pathogenic capsular polysaccharide (CPS) by intermolecularly autophosphorylating its C-terminal tyrosine cluster. The kinase Etk, however, needs to be first activated by the intramolecular phosphorylation of a tyrosine residue, Y574, next to the active sit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900811p

    authors: Lu T,Tan H,Lee D,Chen G,Jia Z

    更新日期:2009-08-25 00:00:00

  • Phosphorylation-dependent regulation of the guanylyl cyclase-linked natriuretic peptide receptor B: dephosphorylation is a mechanism of desensitization.

    abstract::C-type natriuretic peptide (CNP) binds the guanylyl cyclase-linked natriuretic peptide receptor B (NPR-B) and stimulates marked elevations of the intracellular signaling molecule, cGMP. Here, the essential role of phosphorylation in the hormonal activation and deactivation of this receptor is described. Exposure of NI...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972303k

    authors: Potter LR

    更新日期:1998-02-24 00:00:00

  • Cell-cell recognition: specific binding of Microciona sponge aggregation factor to homotypic cells and the role of calcium ions.

    abstract::Previous studies have established that the mechanism of species-specific sponge cell reaggregation in vitro involves at least three components: a species-specific aggregation factor, its cell surface receptors, and Ca2+ ions. Here we report about the binding of Microciona 125I-labeled aggregation factor to cells and t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00546a032

    authors: Jumblatt JE,Schlup V,Burger MM

    更新日期:1980-03-04 00:00:00

  • Calcium modulates the photoassembly of photosystem II (Mn)4-clusters by preventing ligation of nonfunctional high-valency states of manganese.

    abstract::The requirement for Ca2+ in the Mn(2+)-dependent photoactivation of oxygen evolution was re-evaluated using 17 kDa/24 kDa-less photosystem II (PSII) membranes depleted of (Mn)4-clusters by NH2OH extraction. At optimum conditions (1 mM Mn2+/10 microM 2,6-dichlorphenolindophenol (DCIP)/20 mM Ca2+), the light-induced inc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00041a031

    authors: Chen C,Kazimir J,Cheniae GM

    更新日期:1995-10-17 00:00:00

  • Modification of ribonucleic acid by vitamin B6. 1. Specific interaction of pyridoxal 5'-phosphate with transfer ribonucleic acid.

    abstract::Whole tRNA preparation obtained from a human cell line (HT-29) of colon carcinoma and purified specific Escherichia coli tRNA were reacted with pyridoxal 5'-phosphate, reduced by sodium borohydride and digested with RNase A and snake venom phosphodiesterase. Two-dimensional chromatography of the pyridoxal 5'-phosphate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00635a033

    authors: Kopelovich L,Wolfe G

    更新日期:1977-08-09 00:00:00

  • Membrane interaction of disease-related dynorphin A variants.

    abstract::The membrane interaction properties of two single-residue variants, R6W and L5S, of the 17-amino acid neuropeptide dynorphin A (DynA) were studied by circular dichroism (CD) and nuclear magnetic resonance (NMR) spectroscopy. Corresponding gene mutations have recently been discovered in humans and causatively linked to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi4004205

    authors: Björnerås J,Gräslund A,Mäler L

    更新日期:2013-06-18 00:00:00

  • Effect of thioredoxin deletion and p53 cysteine replacement on human p53 activity in wild-type and thioredoxin reductase null yeast.

    abstract::Reporter gene transactivation by human p53 is inhibited in budding yeast lacking the TRR1 gene encoding thioredoxin reductase. To investigate the role of thioredoxin in controlling p53 activity, the level of reporter gene transactivation by p53 was determined in yeast lacking the TRX1 and TRX2 genes encoding cytosolic...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900757q

    authors: Stoner CS,Pearson GD,Koç A,Merwin JR,Lopez NI,Merrill GF

    更新日期:2009-09-29 00:00:00

  • Molecular dynamics simulations of pentapeptides at interfaces: salt bridge and cation-pi interactions.

    abstract::Peptide-membrane interactions are important for understanding the binding, partitioning, and folding of membrane proteins; the activity of antimicrobial and fusion peptides; and a number of other processes. We describe molecular dynamics simulations (10-25 ns) of two pentapeptides Ace-WLXLL (with X = Arg or Lys side c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi027001j

    authors: Aliste MP,MacCallum JL,Tieleman DP

    更新日期:2003-08-05 00:00:00

  • Comparison of the energetics of the uncatalyzed and glutamate dehydrogenase catalyzed alpha-imino acid-alpha-amino acid interconversion.

    abstract::The thermodynamic and activation parameters for the reduction of delta 1-pyrroline-2-carboxylic acid (an alpha-imino acid) by reduced nicotinamide adenine dinucleotide phosphate (NADPH) are compared with those for the reduction of the same imino acid by the glutamate dehydrogenase-NADPH complex. The enthalpies of acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00341a013

    authors: Srinivasan R,Fisher HF

    更新日期:1985-09-24 00:00:00

  • Electron spin echo modulation and nuclear relaxation studies of staphylococcal nuclease and its metal-coordinating mutants.

    abstract::Electron spin echo envelope modulation (ESEEM) spectroscopy has been applied to the determination of the number of water molecules coordinated to the metal in the binary complex of staphylococcal nuclease with Mn2+, to the ternary enzyme-Mn2+-3',5'-pdTp complex, and to ternary complexes of a number of mutant enzymes i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00421a010

    authors: Serpersu EH,McCracken J,Peisach J,Mildvan AS

    更新日期:1988-10-18 00:00:00

  • Molecular mechanisms and binding site location for the noncompetitive antagonist crystal violet on nicotinic acetylcholine receptors.

    abstract::We investigated the molecular mechanisms and the binding site location for the fluorophor crystal violet (CrV), a noncompetitive antagonist of the nicotinic acetylcholine receptor (AChR). To this end, radiolabeled competition binding, fluorescence spectroscopy, Schild-type analysis, patch-clamp recordings, and molecul...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051752e

    authors: Arias HR,Bhumireddy P,Spitzmaul G,Trudell JR,Bouzat C

    更新日期:2006-02-21 00:00:00

  • Structural studies on phophatidylcholine-cholesterol mixed vesicles.

    abstract::The homogeneous, single-walled phosphatidylcholine-cholesterol mixed vesicles were prepared by ultrasonic irradiation of egg phosphatidylcholine in the presence of various amounts of cholesterol in solution at 4 degrees under a nitrogen atmosphere followed by molecular sieve chromatography on a Sepharose 4B column. Ph...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00686a012

    authors: Newman GC,Huang C

    更新日期:1975-07-29 00:00:00

  • Inhibition of peptidyl-prolyl cis/trans isomerase activity by substrate analog structures: thioxo tetrapeptide-4-nitroanilides.

    abstract::The ubiquitous cyclophilins belong to peptidyl-prolyl cis/trans isomerases (PPIases; EC 5.2.1.8). They are able to catalyze the cis/trans isomerization about peptidyl-prolyl amide bonds. The mode of action of human cytosolic cyclophilin (Cyp18cy) has been studied on substrate analog tetrapeptide-4-nitroanilides contai...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00040a012

    authors: Schutkowski M,Wöllner S,Fischer G

    更新日期:1995-10-10 00:00:00

  • Isotopic probes of the argininosuccinate lyase reaction.

    abstract::The mechanism of the argininosuccinate lyase reaction has been probed by the measurement of the effects of isotopic substitution at the reaction centers. A primary deuterium isotope effect of 1.0 on both V and V/K is obtained with (2S,3R)-argininosuccinate-3-d, while a primary 15N isotope effect on V/K of 0.9964 +/- 0...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00365a004

    authors: Kim SC,Raushel FM

    更新日期:1986-08-26 00:00:00

  • The possible relationship between a membrane conformational change and photosystem II dependent hydrogen ion accumulation and adenosine 5'-triphosphate synthesis.

    abstract::Data are presented which suggest that photosystem II dependent hydrogen ion accumulation and ATP synthesis can occur only after the lamellar membranes have undergone a conformational change. This membrane conformational change is detected by the electron transport dependent incorporation of diazonium benzene[35S]sulfo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00691a008

    authors: Giaquinta RT,Ort DR,Dilley RA

    更新日期:1975-10-07 00:00:00

  • Substituted NDP-MSH peptides paired with mutant melanocortin-4 receptors demonstrate the role of transmembrane 6 in receptor activation.

    abstract::The melanocortin-4 receptor (MC4R) is involved in regulating energy homeostasis and is a potential therapeutic target for obesity and cachexia. Molecular interactions between peptide ligands and MC4R have been studied in detail. Less is known regarding the role of these interactions in the mechanism of MC4R activation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700406k

    authors: Fleck BA,Ling N,Chen C

    更新日期:2007-09-18 00:00:00

  • Cholesterol decreases the interfacial elasticity and detergent solubility of sphingomyelins.

    abstract::The interfacial interactions of cholesterol with sphingomyelins (SMs) containing various homogeneous acyl chains have been investigated by Langmuir film balance approaches. Low in-plane elasticity among the packed lipids was identified as an important physical feature of the cholesterol-sphingomyelin liquid-ordered ph...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002791n

    authors: Li XM,Momsen MM,Smaby JM,Brockman HL,Brown RE

    更新日期:2001-05-22 00:00:00

  • Exploring the role and the binding affinity of a second zinc equivalent in B. cereus metallo-beta-lactamase.

    abstract::Metallo-beta-lactamases are a newly characterized family of zinc enzymes present in several pathogenic strains that represent an emerging clinical threat. Enzymes from different organisms exhibit an outstanding functional diversity, particularly in the metal ion requirements for activity. We have investigated the effe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010933n

    authors: Rasia RM,Vila AJ

    更新日期:2002-02-12 00:00:00

  • Subunit affinities and stoichiometries of the human papillomavirus type 11 E1:E2:DNA complex.

    abstract::The association between the papillomavirus E1 and E2 proteins is an important regulatory interaction, imparting coordinated control of viral transcription and replication. Using fluorescence polarization, we have characterized the interactions between HPV-11 E1, HPV-11 E2, and DNA in solution at equilibrium. For these...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982616v

    authors: Chao SF,Rocque WJ,Daniel S,Czyzyk LE,Phelps WC,Alexander KA

    更新日期:1999-04-06 00:00:00

  • Effects of lipids and long-chain alkyl derivatives on the activity of (Ca2+-Mg2+)-ATPase.

    abstract::The ATPase activity of the (Ca2+-Mg2+)-ATPase reconstituted into bilayers of phosphatidylcholines depends on the fatty acyl chain length of the phospholipids. It is shown that the fluorescence response to Ca2+ of the ATPase modified with fluorescein isothiocyanate is also dependent on phospholipid structure and is int...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00371a043

    authors: Froud RJ,East JM,Jones OT,Lee AG

    更新日期:1986-11-18 00:00:00