Estimation of viable Escherichia coli O157 in surface waters using enrichment in conjunction with immunological detection.

Abstract:

:The use of a minimal lactose enrichment broth (MLB) in conjunction with immunomagnetic electrochemiluminescence detection (IM-ECL) was evaluated for the estimation of viable Escherichia coli O157 populations in surface water samples. In principle, E. coli O157 populations (C(initial E. coli O157)) can be derived from enrichment data according to the equation: C(initial E. coli O157) = C(initial coliforms) x C(final E. coli O157)/C(final coliforms)), assuming that the growth rates and lag times of water-borne E. coli O157 and collective coliforms are sufficiently comparable, or at least consistent. We have previously described a protocol for determining C(final E. coli O157) in MLB-enriched water samples. In the present study, 80% of coliforms (red/pink colonies on MacConkey Agar) grew in MLB, indicating that this provides reasonably accurate estimates of C(initial coliforms). Estimates of C(final coliforms) were determined from turbidity data. Initial E. coli O157 populations (C(initial E. coli O157)) were calculated for 33 Baltimore watershed samples giving a positive IM-ECL response. The majority of samples contained E. coli O157 concentrations of < 1 cell per 100 ml. These data indicate that E. coli O157 are present in surface water samples but at very low levels. Growth rates for MLB-enriched coliforms were highly variable (k= 0.47 +/- 0.13 h(-1), n= 72). There was no correlation between growth rates and any measured water parameter, suggesting that coliform populations in water samples are spatially and temporally unique. Although variability in growth rates was expected to yield some low values, the fact that most E. coli O157 concentrations were < 1 suggests that other factor(s) were also responsible. Studies with E. coli O157:H7 and wild-type E. coli suggest that increased lag times due to starvation were at least partially responsible for the observed data. Based on estimates of C(initial coliforms) and k(coliforms), MLB was evaluated for sensitivity and quantitativeness. Simulated populations of E. coli O157:H7 at stationary phase varied from ca. 10(3) to 10(8) cells ml(-1) enrichment culture. Although not suitable for quantitation, MLB enrichment in conjunction with IM-ECL can detect as few as one viable water-borne E. coli O157 cell per 100 ml surface water. Experiments are in progress to evaluate alternative media for sensitivity and quantitative detection of enterohemorrhagic E. coli.

journal_name

J Microbiol Methods

authors

Shelton DR,Higgins JA,Van Kessel JA,Pachepsky YA,Belt K,Karns JS

doi

10.1016/j.mimet.2004.03.017

subject

Has Abstract

pub_date

2004-08-01 00:00:00

pages

223-31

issue

2

eissn

0167-7012

issn

1872-8359

pii

S0167701204000910

journal_volume

58

pub_type

杂志文章
  • Transmission of Chlamydophila pneumoniae from dendritic cells to macrophages does not require cell-to-cell contact in vitro.

    abstract::Chlamydophila pneumoniae (C. pneumoniae) has been detected in macrophages (Mø) and dendritic cells (DC) in vascular diseases. To understand the importance of these cell types in C. pneumoniae infection and transmission, we infected DC and cultivated them with Mø in a coculture model system which precludes cell-to-cell...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.12.010

    authors: Wittkop U,Peppmueller M,Njau F,Leibold W,Klos A,Krausse-Opatz B,Hudson AP,Zeidler H,Haller H,Wagner AD

    更新日期:2008-03-01 00:00:00

  • Serotype discrimination of encapsulated Streptococcus pneumoniae strains by Fourier-transform infrared spectroscopy and chemometrics.

    abstract::Fourier-transform infrared (FTIR) spectroscopy was evaluated as an alternative method for serotyping encapsulated Streptococcus pneumonia strains. Sixty-nine invasive strains from the Microbiology Laboratory of the Medicine Faculty of University of Lisbon were selected for the analysis. The encapsulated strains used i...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2013.02.008

    authors: Vaz M,Meirinhos-Soares L,Sousa CC,Ramirez M,Melo-Cristino J,Lopes JA

    更新日期:2013-05-01 00:00:00

  • Long term storage of fastidious bacteria (Neisseria spp. and Haemophilus spp.) with swab preservation at -80 °C.

    abstract::Preservation of strains is important to further studies and characterization; we have shown a technique of long-term preservation of Neisseria spp. and Haemophilus spp. by freezing cotton tip swabs impregnated with fastidious organisms at -80 °C without the addition of cryoprotectants. ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.105969

    authors: Villa L,Torreblanca A,Otero L,Carreño F,Campo R,López-Escobar M,Vazquez F

    更新日期:2020-08-01 00:00:00

  • Quantification of local water and biomass in wild type PA01 biofilms by Confocal Raman Microspectroscopy.

    abstract::Confocal Raman Microspectroscopy (CRM) can be used as a tool for the in situ evaluation of the chemical composition of living, fully submerged, unstained biofilms. In this study the estimation of the local water content in Pseudomonas aeruginosa PA01 biofilms is given as an example. The ratio of the area of the O-H st...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.05.012

    authors: Sandt C,Smith Palmer T,Pink J,Pink D

    更新日期:2008-09-01 00:00:00

  • Rapid quantification of a microbial surfactant by a simple turbidometric method.

    abstract::Quantification of the biosurfactants produced by a variety of microorganisms is a time taking and difficult task due to the lack of rapid, efficient and accurate methods. This work presents a simple turbidometric method for quantification of crude biosurfactants based on their property to become insoluble at low pH va...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2008.09.010

    authors: Mukherjee S,Das P,Sen R

    更新日期:2009-01-01 00:00:00

  • Detection of beer spoilage bacteria Pectinatus and Megasphaera with acridinium ester labelled DNA probes using a hybridisation protection assay.

    abstract::DNA probes specific for rRNA of selected target species were utilised for the detection of beer spoilage bacteria of the genera Pectinatus and Megasphaera using a hybridisation protection assay (HPA). All the probes were modified during synthesis by addition of an amino linker arm at the 5' end or were internally modi...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2013.10.014

    authors: Paradh AD,Hill AE,Mitchell WJ

    更新日期:2014-01-01 00:00:00

  • Development and validation of a droplet digital PCR assay for the detection and quantification of Bartonella species within human clinical samples.

    abstract::This report describes the development, optimization, and validation of a ddPCR assay for the detection of Bartonella spp. DNA within several sample matrices, including clinical blood samples from patients with or without documented Bartonella spp. bacteremia. The Bartonella spp. ddPCR assay was developed based upon pr...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.106022

    authors: Maggi RG,Richardson T,Breitschwerdt EB,Miller JC

    更新日期:2020-09-01 00:00:00

  • Optimization of a Nile Red method for rapid lipid determination in autotrophic, marine microalgae is species dependent.

    abstract::Several studies have been conducted to develop rapid methods for quantification of lipid content in microalgae, as an alternative for time consuming gravimetric methods. Different studies showed that lipid staining with Nile Red in whole cell suspensions and subsequently quantification by the use of a spectrofluoromet...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.09.009

    authors: Balduyck L,Veryser C,Goiris K,Bruneel C,Muylaert K,Foubert I

    更新日期:2015-11-01 00:00:00

  • An efficient DNA isolation protocol for filamentous cyanobacteria of the genus Arthrospira.

    abstract::Thanks to their photosynthetic and nutritive properties, cyanobacteria of the Arthrospira genus are of interest as food supplements, as efficient oxygen producing life support system organisms for manned space flight, and for the production of biofuels. Despite these potential valuable applications, full genome sequen...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2009.11.012

    authors: Morin N,Vallaeys T,Hendrickx L,Natalie L,Wilmotte A

    更新日期:2010-02-01 00:00:00

  • Improved pH-ratiometry for the three-dimensional mapping of pH microenvironments in biofilms under flow conditions.

    abstract::Confocal microscopy-based monitoring of pH in biofilms is gaining increasing interest, as it allows for a quick assessment of horizontal pH gradients without mechanically perturbing the biofilm. Ratiometric monitoring of pH with the fluorescent dye C-SNARF-4 has been used to reliably map extracellular pH in the basal ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2018.08.007

    authors: Schlafer S,Baelum V,Dige I

    更新日期:2018-09-01 00:00:00

  • Microsatellite based typing of Aspergillus fumigatus: strengths, pitfalls and solutions.

    abstract::Microsatellites, or short tandem repeats (STR's), are popular tools to discriminate between microbial isolates. Here, we report on the robustness of a microsatellite panel for discrimination of Aspergillus fumigatus isolates. Two major PCR artefacts (stutter peaks and minus-A peaks) can complicate correct interpretati...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.01.009

    authors: de Valk HA,Meis JF,Klaassen CH

    更新日期:2007-05-01 00:00:00

  • Insufficient sensitivity of laser desorption-time of flight mass spectrometry-based detection of hemozoin for malaria screening.

    abstract::Laser desorption-time of flight (LD-TOF) mass spectrometry-based detection of hemozoin was assessed for its performance characteristics as a rapid screening test for malaria. In spite of good specificity of >95%, poor sensitivity of 80.2% for microscopically positive samples makes the easy-to-apply and rapid approach ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.04.002

    authors: Christner M,Frickmann H,Klupp E,Rohde H,Kono M,Tannich E,Poppert S

    更新日期:2019-05-01 00:00:00

  • A toolbox to measure changes in the cell wall glycopolymer composition during differentiation of Streptomyces coelicolor A3(2).

    abstract::Cell wall glycopolymers (CWG) represent an important component of the Gram-positive cell envelope with many biological functions. The mycelial soil bacterium Streptomyces coelicolor A3(2) incorporates two distinct CWGs, polydiglycosylphosphate (PDP) and teichulosonic acid, into the cell wall of its vegetative mycelium...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2016.07.002

    authors: Sigle S,Steblau N,Wohlleben W,Muth G

    更新日期:2016-09-01 00:00:00

  • A custom amplicon sequencing approach to detect resistance associated mutations and sequence types in Mycoplasma genitalium.

    abstract:BACKGROUND:Mycoplasma genitalium resistance to antibiotic treatments is increasing, with very limited treatment alternatives on the horizon. Surveillance via sequencing of multiple M. genitalium loci would allow: monitoring of known antibiotic resistance mutations, associations between resistance/treatment failure and ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.106089

    authors: Plummer EL,Murray GL,Bodiyabadu K,Su J,Garland SM,Bradshaw CS,Read TRH,Tabrizi SN,Danielewski JA

    更新日期:2020-12-01 00:00:00

  • Actinomyces naeslundii GroEL-dependent initial attachment and biofilm formation in a flow cell system.

    abstract::Actinomyces naeslundii is an early colonizer with important roles in the development of the oral biofilm. The effects of butyric acid, one of short chain fatty acids in A. naeslundii biofilm formation was observed using a flow cell system with Tryptic soy broth without dextrose and with 0.25% sucrose (TSB sucrose). Si...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.12.021

    authors: Arai T,Ochiai K,Senpuku H

    更新日期:2015-02-01 00:00:00

  • A new method for the construction of a mutant library with a predictable occurrence rate using Poisson distribution.

    abstract::A yeast transcriptional activator, Gcn4p, induces the expression of genes that are involved in amino acid and purine biosynthetic pathways under amino acid starvation. Gcn4p has an acidic activation domain in the central region and a bZIP domain in the C-terminus that is divided into the DNA-binding motif and dimeriza...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2007.02.010

    authors: Seong KM,Park H,Kim SJ,Ha HN,Lee JY,Kim J

    更新日期:2007-06-01 00:00:00

  • A single-pair method to screen Rickettsia-infected and uninfected whitefly Bemisia tabaci populations.

    abstract::Bacterial endosymbionts such as Rickettsia and Wolbachia play prominent roles in the development and behaviour of their insect hosts, such as whiteflies, aphids, psyllids and mealybugs. Accumulating studies have emphasized the importance of establishing experimental insect populations that are either lacking or bearin...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2019.105797

    authors: Liu Y,Fan ZY,An X,Shi PQ,Ahmed MZ,Qiu BL

    更新日期:2020-01-01 00:00:00

  • The utility of banana peel extract agar in the presumptive identification of Cryptococcus neoformans.

    abstract::We prepared a newer growth medium, banana peel extract agar (BPEA) containing the extracts of chopped banana peels for the selective cultivation of Cryptococcus neoformans. Over the medium, the growth resulted in the development of light to the dark brown coloured colonies indicating the chromogenic potential of the B...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2020.106046

    authors: Gupta MK,Mallick P,Pandey N,Shankar V,Chakravarty J,Tilak R

    更新日期:2020-10-01 00:00:00

  • Comparison of the Diversilab® system with multi-locus sequence typing and pulsed-field gel electrophoresis for the characterization of Streptococcus agalactiae invasive strains.

    abstract::Streptococcus agalactiae (or group B streptococcus; GBS) is a leading cause of neonatal morbidity and mortality in the developed countries. Several epidemiological typing tools have been developed for GBS to investigate the association between genotype and disease and to assess genetic variations within genogroups. Th...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2011.02.010

    authors: Al Nakib M,Longo M,Tazi A,Billoet A,Raymond J,Trieu-Cuot P,Poyart C

    更新日期:2011-05-01 00:00:00

  • Development of single chain variable fragment (scFv) antibodies against Xylella fastidiosa subsp. pauca by phage display.

    abstract::Xylella fastidiosa is a member of the gamma proteobacteria. It is fastidious, insect-vectored and xylem-limited and causes a variety of diseases, some severe, on a wide range of economically important perennial crops, including grape and citrus. Antibody based detection assays are commercially available for X. fastidi...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2015.07.020

    authors: Yuan Q,Jordan R,Brlansky RH,Istomina O,Hartung J

    更新日期:2015-10-01 00:00:00

  • Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis.

    abstract::Analysis of microbial community structure in complex environmental samples using nucleic acid techniques requires efficient unbiased DNA extraction procedures; however, humic acids and other contaminants complicate the isolation of PCR-amplifiable DNA from compost and other organic-rich samples. In this study, combina...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/s0167-7012(01)00377-3

    authors: LaMontagne MG,Michel FC Jr,Holden PA,Reddy CA

    更新日期:2002-05-01 00:00:00

  • Relationship between conventional culture and flow cytometry for the diagnosis of urinary tract infection.

    abstract:BACKGROUND:Urine culture is the gold standard for the diagnosis of urinary tract infections (UTI). The use of flow cytometry analyzers (FCA) prior to culture allows for the quantification and recognition of cell components in urine to be automated and makes it possible to relate these data to the urine pathogens subseq...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.03.010

    authors: García-Coca M,Gadea I,Esteban J

    更新日期:2017-06-01 00:00:00

  • Improving efficiency of viability-PCR for selective detection of live cells.

    abstract::Viability PCR (v-PCR) as a method to selectively detect intact live cells has gained considerable interest over the last years with an increasing number of applications. The principle is based on treatment of microbiological samples with a viability dye prior to extraction of genomic DNA and its amplification. The dye...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2013.01.018

    authors: Nkuipou-Kenfack E,Engel H,Fakih S,Nocker A

    更新日期:2013-04-01 00:00:00

  • Improved method for collection of sputum for tuberculosis testing to ensure adequate sample volumes for molecular diagnostic testing.

    abstract::The quality and quantity of sputum collected has an important impact on the laboratory diagnosis of pulmonary TB. We conducted a pilot study to assess a new collection cups for the collection of sputum for the diagnosis of pulmonary tuberculosis. The pilot study utilized the standard collection cup in South Africa dem...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.01.011

    authors: Fisher M,Dolby T,Surtie S,Omar G,Hapeela N,Basu D,DeWalt A,Kelso D,Nicol M,McFall S

    更新日期:2017-04-01 00:00:00

  • Proteome mining for the identification and in-silico characterization of putative drug targets of multi-drug resistant Clostridium difficile strain 630.

    abstract::Clostridium difficile is an enteric pathogen that causes approximately 20% to 30% of antibiotic-associated diarrhea. In recent years, there has been a substantial rise in the rate of C. difficile infections as well as the emergence of virulent and antibiotic resistant C. difficile strains. So, there is an urgent need ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2017.02.008

    authors: Lohani M,Dhasmana A,Haque S,Wahid M,Jawed A,Dar SA,Mandal RK,Areeshi MY,Khan S

    更新日期:2017-05-01 00:00:00

  • High resolution clear native electrophoresis is a good alternative to blue native electrophoresis for the characterization of the Escherichia coli membrane complexes.

    abstract::Blue native electrophoresis (BNE) has become the most popular method for the global analysis of membrane protein complexes. Although it has been shown to be very useful for that purpose, it can produce the dissociation of complexes with weak interactions and, due to the use of Coomassie Brilliant Blue, does not allow ...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.05.003

    authors: Diéguez-Casal E,Freixeiro P,Costoya L,Criado MT,Ferreirós C,Sánchez S

    更新日期:2014-07-01 00:00:00

  • Comparative study with two different enrichments in the culture media used in the disinfectant efficacy assay.

    abstract::Recent changes in Brazilian legislation for commercial disinfectants have been published due to the recent epidemic of nosocomial infections caused by rapidly growing mycobacteria (RGM) in many states of Brazil over the last 8years. One of these documents requires that all the manufacturers provide evidence of efficac...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2011.12.004

    authors: Sabagh BP,Souto Ada S,Reis LM,Silva SA,Pereira DC,Neves Mde C,Pinheiro RR,Duarte RS,Miyazaki NH,Bôas MH

    更新日期:2012-02-01 00:00:00

  • Improved expression and purification of the correctly folded response regulator PlnC from lactobacilli.

    abstract::The response regulator PlnC is part of the signal transduction system that plays a key role in the regulation of bacteriocin production in Lactobacillus plantarum C11. In this study, we wanted to express high levels of the response regulator PlnC in a soluble and native form for purification and further studies. The p...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2006.03.022

    authors: Straume D,Axelsson L,Nes IF,Diep DB

    更新日期:2006-11-01 00:00:00

  • A new high-throughput AFLP approach for identification of new genetic polymorphism in the genome of the clonal microorganism Mycobacterium tuberculosis.

    abstract::We have here applied high-throughput amplified fragment length polymorphism (htAFLP) analysis to strains belonging to the five classical species of the Mycobacterium tuberculosis complex. Using 20 strains, three enzyme combinations and eight selective amplification primer pairs, 24 AFLP reactions were performed per st...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2003.09.018

    authors: van den Braak N,Simons G,Gorkink R,Reijans M,Eadie K,Kremers K,van Soolingen D,Savelkoul P,Verbrugh H,van Belkum A

    更新日期:2004-01-01 00:00:00

  • Development of an oriC vector for use in Mycoplasma synoviae.

    abstract::Mycoplasma synoviae, an important poultry pathogen, belonging to the class Mollicutes, causes airsacculitis, synovitis, decreased egg production and produces significant economic losses. Efforts to determine M. synoviae virulence factors and their role in pathogenicity require suitable tools for genetic manipulation o...

    journal_title:Journal of microbiological methods

    pub_type: 杂志文章

    doi:10.1016/j.mimet.2014.05.014

    authors: Shahid MA,Marenda MS,Markham PF,Noormohammadi AH

    更新日期:2014-08-01 00:00:00