Coupling of fluid and elastic models for biomechanical simulations of brain deformations using FEM.

Abstract:

:In order to improve the accuracy of image-guided neurosurgery, different biomechanical models have been developed to correct preoperative images with respect to intraoperative changes like brain shift or tumor resection. All existing biomechanical models simulate different anatomical structures by using either appropriate boundary conditions or by spatially varying material parameter values, while assuming the same physical model for all anatomical structures. In general, this leads to physically implausible results, especially in the case of adjacent elastic and fluid structures. Therefore, we propose a new approach which allows to couple different physical models. In our case, we simulate rigid, elastic and fluid regions by using the appropriate physical description for each material, namely either the Navier equation or the Stokes equation. To solve the resulting differential equations, we derive a linear matrix system for each region by applying the finite element method (FEM). Thereafter, the linear matrix systems are linked together, ending up with one overall linear matrix system. Our new approach has been tested and compared to a purely linear elastic model using synthetic as well as tomographic images. It turns out from our experiments, that the integrated treatment of rigid, elastic and fluid regions improves the physical plausibility of the predicted deformation results as compared to a purely linear elastic model.

journal_name

Med Image Anal

journal_title

Medical image analysis

authors

Hagemann A,Rohr K,Stiehl HS

doi

10.1016/s1361-8415(02)00059-2

subject

Has Abstract

pub_date

2002-12-01 00:00:00

pages

375-88

issue

4

eissn

1361-8415

issn

1361-8423

pii

S1361841502000592

journal_volume

6

pub_type

杂志文章
  • Quantitative analysis of multi-spectral fundus images.

    abstract::We have developed a new technique for extracting histological parameters from multi-spectral images of the ocular fundus. The new method uses a Monte Carlo simulation of the reflectance of the fundus to model how the spectral reflectance of the tissue varies with differing tissue histology. The model is parameterised ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2006.05.007

    authors: Styles IB,Calcagni A,Claridge E,Orihuela-Espina F,Gibson JM

    更新日期:2006-08-01 00:00:00

  • Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps.

    abstract::Accurate cortical thickness estimation is important for the study of many neurodegenerative diseases. Many approaches have been previously proposed, which can be broadly categorised as mesh-based and voxel-based. While the mesh-based approaches can potentially achieve subvoxel resolution, they usually lack the computa...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2009.07.003

    authors: Acosta O,Bourgeat P,Zuluaga MA,Fripp J,Salvado O,Ourselin S,Alzheimer's Disease Neuroimaging Initiative.

    更新日期:2009-10-01 00:00:00

  • Groupwise registration with global-local graph shrinkage in atlas construction.

    abstract::Graph-based groupwise registration methods are widely used in atlas construction. Given a group of images, a graph is built whose nodes represent the images, and whose edges represent a geodesic path between two nodes. The distribution of images on an image manifold is explored through edge traversal in a graph. The f...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101711

    authors: Fu T,Yang J,Li Q,Ai D,Song H,Jiang Y,Wang Y,Frangi AF

    更新日期:2020-08-01 00:00:00

  • Towards cross-modal organ translation and segmentation: A cycle- and shape-consistent generative adversarial network.

    abstract::Synthesized medical images have several important applications. For instance, they can be used as an intermedium in cross-modality image registration or used as augmented training samples to boost the generalization capability of a classifier. In this work, we propose a generic cross-modality synthesis approach with t...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.12.002

    authors: Cai J,Zhang Z,Cui L,Zheng Y,Yang L

    更新日期:2019-02-01 00:00:00

  • Multimodal image registration using floating regressors in the joint intensity scatter plot.

    abstract::This paper presents a new approach for multimodal medical image registration and compares it to normalized mutual information (NMI) and the correlation ratio (CR). Like NMI and CR, the new method's measure of registration quality is based on the distribution of points in the joint intensity scatter plot (JISP); compac...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2007.12.002

    authors: Orchard J

    更新日期:2008-08-01 00:00:00

  • An efficient Riemannian statistical shape model using differential coordinates: With application to the classification of data from the Osteoarthritis Initiative.

    abstract::We propose a novel Riemannian framework for statistical analysis of shapes that is able to account for the nonlinearity in shape variation. By adopting a physical perspective, we introduce a differential representation that puts the local geometric variability into focus. We model these differential coordinates as ele...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2017.09.004

    authors: von Tycowicz C,Ambellan F,Mukhopadhyay A,Zachow S

    更新日期:2018-01-01 00:00:00

  • Automated model-based vertebra detection, identification, and segmentation in CT images.

    abstract::For many orthopaedic, neurological, and oncological applications, an exact segmentation of the vertebral column including an identification of each vertebra is essential. However, although bony structures show high contrast in CT images, the segmentation and labelling of individual vertebrae is challenging. In this pa...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2009.02.004

    authors: Klinder T,Ostermann J,Ehm M,Franz A,Kneser R,Lorenz C

    更新日期:2009-06-01 00:00:00

  • Directional wavelet based features for colonic polyp classification.

    abstract::In this work, various wavelet based methods like the discrete wavelet transform, the dual-tree complex wavelet transform, the Gabor wavelet transform, curvelets, contourlets and shearlets are applied for the automated classification of colonic polyps. The methods are tested on 8 HD-endoscopic image databases, where ea...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2016.02.001

    authors: Wimmer G,Tamaki T,Tischendorf JJ,Häfner M,Yoshida S,Tanaka S,Uhl A

    更新日期:2016-07-01 00:00:00

  • Intensity non-uniformity correction in MRI: existing methods and their validation.

    abstract::Magnetic resonance imaging is a popular and powerful non-invasive imaging technique. Automated analysis has become mandatory to efficiently cope with the large amount of data generated using this modality. However, several artifacts, such as intensity non-uniformity, can degrade the quality of acquired data. Intensity...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2005.09.004

    authors: Belaroussi B,Milles J,Carme S,Zhu YM,Benoit-Cattin H

    更新日期:2006-04-01 00:00:00

  • Local spatio-temporal encoding of raw perfusion MRI for the prediction of final lesion in stroke.

    abstract::We address the medical image analysis issue of predicting the final lesion in stroke from early perfusion magnetic resonance imaging. The classical processing approach for the dynamical perfusion images consists in a temporal deconvolution to improve the temporal signals associated with each voxel before performing pr...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.08.008

    authors: Giacalone M,Rasti P,Debs N,Frindel C,Cho TH,Grenier E,Rousseau D

    更新日期:2018-12-01 00:00:00

  • An improved deep network for tissue microstructure estimation with uncertainty quantification.

    abstract::Deep learning based methods have improved the estimation of tissue microstructure from diffusion magnetic resonance imaging (dMRI) scans acquired with a reduced number of diffusion gradients. These methods learn the mapping from diffusion signals in a voxel or patch to tissue microstructure measures. In particular, it...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101650

    authors: Ye C,Li Y,Zeng X

    更新日期:2020-04-01 00:00:00

  • Discriminant snakes for 3D reconstruction of anatomical organs.

    abstract::In this work a new statistic deformable model for 3D segmentation of anatomical organs in medical images is proposed. A statistic discriminant snake performs a supervised learning of the object boundary in an image slice to segment the next slice of the image sequence. Each part of the object boundary is projected in ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(03)00014-8

    authors: Pardo XM,Radeva P,Cabello D

    更新日期:2003-09-01 00:00:00

  • Piecewise-diffeomorphic image registration: application to the motion estimation between 3D CT lung images with sliding conditions.

    abstract::In this paper, we propose a new strategy for modelling sliding conditions when registering 3D images in a piecewise-diffeomorphic framework. More specifically, our main contribution is the development of a mathematical formalism to perform Large Deformation Diffeomorphic Metric Mapping registration with sliding condit...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2012.10.001

    authors: Risser L,Vialard FX,Baluwala HY,Schnabel JA

    更新日期:2013-02-01 00:00:00

  • Automated classification of lung bronchovascular anatomy in CT using AdaBoost.

    abstract::Lung CAD systems require the ability to classify a variety of pulmonary structures as part of the diagnostic process. The purpose of this work was to develop a methodology for fully automated voxel-by-voxel classification of airways, fissures, nodules, and vessels from chest CT images using a single feature set and cl...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2007.03.004

    authors: Ochs RA,Goldin JG,Abtin F,Kim HJ,Brown K,Batra P,Roback D,McNitt-Gray MF,Brown MS

    更新日期:2007-06-01 00:00:00

  • Attentive neural cell instance segmentation.

    abstract::Neural cell instance segmentation, which aims at joint detection and segmentation of every neural cell in a microscopic image, is essential to many neuroscience applications. The challenge of this task involves cell adhesion, cell distortion, unclear cell contours, low-contrast cell protrusion structures, and backgrou...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.05.004

    authors: Yi J,Wu P,Jiang M,Huang Q,Hoeppner DJ,Metaxas DN

    更新日期:2019-07-01 00:00:00

  • Computer aided diagnosis of thyroid nodules based on the devised small-datasets multi-view ensemble learning.

    abstract::With the development of deep learning, its application in diagnosis of benign and malignant thyroid nodules has been widely concerned. However, it is difficult to obtain medical images, resulting in insufficient number of data, which contradicts the large amount of data required for acquiring effective deep learning d...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101819

    authors: Chen Y,Li D,Zhang X,Jin J,Shen Y

    更新日期:2021-01-01 00:00:00

  • Deformable organisms for automatic medical image analysis.

    abstract::We introduce a new approach to medical image analysis that combines deformable model methodologies with concepts from the field of artificial life. In particular, we propose "deformable organisms", autonomous agents whose task is the automatic segmentation, labeling, and quantitative analysis of anatomical structures ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(02)00083-x

    authors: McInerney T,Hamarneh G,Shenton M,Terzopoulos D

    更新日期:2002-09-01 00:00:00

  • Advances and challenges in deformable image registration: From image fusion to complex motion modelling.

    abstract::Over the past 20 years, the field of medical image registration has significantly advanced from multi-modal image fusion to highly non-linear, deformable image registration for a wide range of medical applications and imaging modalities, involving the compensation and analysis of physiological organ motion or of tissu...

    journal_title:Medical image analysis

    pub_type: 社论

    doi:10.1016/j.media.2016.06.031

    authors: Schnabel JA,Heinrich MP,Papież BW,Brady SJM

    更新日期:2016-10-01 00:00:00

  • Computerized detection of pulmonary nodules in chest radiographs based on morphological features and wavelet snake model.

    abstract::We have developed a new computer-aided diagnosis scheme for automated detection of lung nodules in digital chest radiographs based on a combination of morphological features and the wavelet snake. In our scheme, two processes were applied in parallel to reduce the false-positive detections after initial nodule candida...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(02)00064-6

    authors: Keserci B,Yoshida H

    更新日期:2002-12-01 00:00:00

  • Personalized mitral valve closure computation and uncertainty analysis from 3D echocardiography.

    abstract::Intervention planning is essential for successful Mitral Valve (MV) repair procedures. Finite-element models (FEM) of the MV could be used to achieve this goal, but the translation to the clinical domain is challenging. Many input parameters for the FEM models, such as tissue properties, are not known. In addition, on...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2016.03.011

    authors: Grbic S,Easley TF,Mansi T,Bloodworth CH,Pierce EL,Voigt I,Neumann D,Krebs J,Yuh DD,Jensen MO,Comaniciu D,Yoganathan AP

    更新日期:2017-01-01 00:00:00

  • Automated localization of breast cancer in DCE-MRI.

    abstract::Dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) is increasingly being used for the detection and diagnosis of breast cancer. Compared to mammography, DCE-MRI provides higher sensitivity, however its specificity is variable. Moreover, DCE-MRI data analysis is time consuming and depends on reader expertis...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2014.12.001

    authors: Gubern-Mérida A,Martí R,Melendez J,Hauth JL,Mann RM,Karssemeijer N,Platel B

    更新日期:2015-02-01 00:00:00

  • Non-invasive estimation of relative pressure in turbulent flow using virtual work-energy.

    abstract::Vascular pressure differences are established risk markers for a number of cardiovascular diseases. Relative pressures are, however, often driven by turbulence-induced flow fluctuations, where conventional non-invasive methods may yield inaccurate results. Recently, we proposed a novel method for non-turbulent flows, ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.101627

    authors: Marlevi D,Ha H,Dillon-Murphy D,Fernandes JF,Fovargue D,Colarieti-Tosti M,Larsson M,Lamata P,Figueroa CA,Ebbers T,Nordsletten DA

    更新日期:2020-02-01 00:00:00

  • Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation.

    abstract::The ability to predict patient-specific soft tissue deformations is key for computer-integrated surgery systems and the core enabling technology for a new era of personalized medicine. Element-Free Galerkin (EFG) methods are better suited for solving soft tissue deformation problems than the finite element method (FEM...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.06.004

    authors: Joldes G,Bourantas G,Zwick B,Chowdhury H,Wittek A,Agrawal S,Mountris K,Hyde D,Warfield SK,Miller K

    更新日期:2019-08-01 00:00:00

  • Spatially variable Rician noise in magnetic resonance imaging.

    abstract::Magnetic resonance images tend to be influenced by various random factors usually referred to as "noise". The principal sources of noise and related artefacts can be divided into two types: arising from hardware (acquisition coil arrays, gradient coils, field inhomogeneity); and arising from the subject (physiological...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2011.12.002

    authors: Maximov II,Farrher E,Grinberg F,Shah NJ

    更新日期:2012-02-01 00:00:00

  • Generalised coherent point drift for group-wise multi-dimensional analysis of diffusion brain MRI data.

    abstract::A probabilistic framework for registering generalised point sets comprising multiple voxel-wise data features such as positions, orientations and scalar-valued quantities, is proposed. It is employed for the analysis of magnetic resonance diffusion tensor image (DTI)-derived quantities, such as fractional anisotropy (...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.01.001

    authors: Ravikumar N,Gooya A,Beltrachini L,Frangi AF,Taylor ZA

    更新日期:2019-04-01 00:00:00

  • Hierarchical segmentation using equivalence test (HiSET): Application to DCE image sequences.

    abstract::Dynamical contrast enhanced (DCE) imaging allows non invasive access to tissue micro-vascularization. It appears as a promising tool to build imaging biomarkers for diagnostic, prognosis or anti-angiogenesis treatment monitoring of cancer. However, quantitative analysis of DCE image sequences suffers from low signal t...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.10.007

    authors: Liu F,Cuenod CA,Thomassin-Naggara I,Chemouny S,Rozenholc Y

    更新日期:2019-01-01 00:00:00

  • Quantitative analysis of retinal OCT.

    abstract::Clinical acceptance of 3-D OCT retinal imaging brought rapid development of quantitative 3-D analysis of retinal layers, vasculature, retinal lesions as well as facilitated new research in retinal diseases. One of the cornerstones of many such analyses is segmentation and thickness quantification of retinal layers and...

    journal_title:Medical image analysis

    pub_type: 社论

    doi:10.1016/j.media.2016.06.001

    authors: Sonka M,Abràmoff MD

    更新日期:2016-10-01 00:00:00

  • Semi-supervised mp-MRI data synthesis with StitchLayer and auxiliary distance maximization.

    abstract::The availability of a large amount of annotated data is critical for many medical image analysis applications, in particular for those relying on deep learning methods which are known to be data-hungry. However, annotated medical data, especially multimodal data, is often scarce and costly to obtain. In this paper, we...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.101565

    authors: Wang Z,Lin Y,Cheng KT,Yang X

    更新日期:2020-01-01 00:00:00

  • Simulation of cardiac pathologies using an electromechanical biventricular model and XMR interventional imaging.

    abstract::Simulating cardiac electromechanical activity is of great interest for a better understanding of pathologies and for therapy planning. Design and validation of such models is difficult due to the lack of clinical data. XMR systems are a new type of interventional facility in which patients can be rapidly transferred b...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2005.05.003

    authors: Sermesant M,Rhode K,Sanchez-Ortiz GI,Camara O,Andriantsimiavona R,Hegde S,Rueckert D,Lambiase P,Bucknall C,Rosenthal E,Delingette H,Hill DL,Ayache N,Razavi R

    更新日期:2005-10-01 00:00:00

  • Improved fidelity of brain microstructure mapping from single-shell diffusion MRI.

    abstract::Diffusion weighted imaging (DWI) is sensitive to alterations in the diffusion of water molecules caused by microstructural barriers. Different microstructural compartments are characterized by differences in DWI signal. Diffusion tensor imaging conflates the signal from these compartments into a single tensor, which p...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2015.10.004

    authors: Taquet M,Scherrer B,Boumal N,Peters JM,Macq B,Warfield SK

    更新日期:2015-12-01 00:00:00