The iron oxidation and hydrolysis chemistry of Escherichia coli bacterioferritin.

Abstract:

:Bacterioferritins are members of a class of spherical shell-like iron storage proteins that catalyze the oxidation and hydrolysis of iron at specific sites inside the protein shell, resulting in formation of a mineral core of hydrated ferric oxide within the protein cavity. Electrode oximetry/pH stat was used to study iron oxidation and hydrolysis chemistry in E. coli bacterioferritin. Consistent with previous UV-visible absorbance measurements, three distinct kinetic phases were detected, and the stoichiometric equations corresponding to each have been determined. The rapid phase 1 reaction corresponds to pairwise binding of 2 Fe(2+) ions at a dinuclear site, called the ferroxidase site, located within each of the 24 subunits, viz., 2Fe(2+) + P(Z) --> [Fe(2)-P](Z) + 4H(+), where P(Z) is the apoprotein of net charge Z and [Fe(2)-P](Z) represents a diferrous ferroxidase complex. The slower phase 2 reaction corresponds to the oxidation of this complex by molecular oxygen according to the net equation: [Fe(2)-P](Z) + (1)/(2)O(2) --> [Fe(2)O-P](Z) where [Fe(2)O-P](Z) represents an oxidized diferric ferroxidase complex, probably a mu-oxo-bridged species as suggested by UV-visible and EPR spectrometric titration data. The third phase corresponds to mineral core formation according to the net reaction: 4Fe(2+) + O(2) + 6H(2)O --> 4FeO(OH)((core)) + 8H(+). Iron oxidation is inhibited by the presence of Zn(2+) ions. The patterns of phase 2 and phase 3 inhibition are different, though inhibition of both phases is complete at 48 Zn(2+)per 24mer, i.e., 2 Zn(2+) per ferroxidase center.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Yang X,Le Brun NE,Thomson AJ,Moore GR,Chasteen ND

doi

10.1021/bi992631f

subject

Has Abstract

pub_date

2000-04-25 00:00:00

pages

4915-23

issue

16

eissn

0006-2960

issn

1520-4995

pii

bi992631f

journal_volume

39

pub_type

杂志文章
  • Structure and mechanism of an ADP-glucose phosphorylase from Arabidopsis thaliana.

    abstract::The X-ray crystal structure of the At5g18200.1 protein has been determined to a nominal resolution of 2.30 A. The structure has a histidine triad (HIT)-like fold containing two distinct HIT-like motifs. The sequence of At5g18200.1 indicates a distant family relationship to the Escherichia coli galactose-1-P uridylyltr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052232m

    authors: McCoy JG,Arabshahi A,Bitto E,Bingman CA,Ruzicka FJ,Frey PA,Phillips GN Jr

    更新日期:2006-03-14 00:00:00

  • Osmotic swelling allows fusion of sendai virions with membranes of desialyzed erythrocytes and chromaffin granules.

    abstract::Sendai virus particles are able to fuse with Pronase-neuraminidase-treated human erythrocyte membranes as well as with vesicles obtained from chromaffin granules of bovine medulla. Fusion is inferred either from electron microscopic studies or from the observation that incubation of fluorescently labeled (bearing octa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00387a018

    authors: Citovsky V,Laster Y,Schuldiner S,Loyter A

    更新日期:1987-06-30 00:00:00

  • Allosteric Modulation of JNK Docking Site Interactions with ATP-Competitive Inhibitors.

    abstract::The c-Jun N-terminal kinases (JNKs) play a wide variety of roles in cellular signaling processes, dictating important, and even divergent, cellular fates. These essential kinases possess docking surfaces distal to their active sites that interact with diverse binding partners, including upstream activators, downstream...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00776

    authors: Lombard CK,Davis AL,Inukai T,Maly DJ

    更新日期:2018-10-09 00:00:00

  • CofE catalyzes the addition of two glutamates to F420-0 in F420 coenzyme biosynthesis in Methanococcus jannaschii.

    abstract::The protein product of the Methanococcus jannaschii MJ0768 gene has been expressed in Escherichia coli, purified to homogeneity, and shown to catalyze the GTP-dependent addition of two l-glutamates to the l-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F(420)-0) to form F(420)-0-glutamyl-glutama...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034779b

    authors: Li H,Graupner M,Xu H,White RH

    更新日期:2003-08-19 00:00:00

  • SecA insertion into phospholipids is stimulated by negatively charged lipids and inhibited by ATP: a monolayer study.

    abstract::SecA-lipid interactions are believed to be important for the translocation of precursor proteins across the inner membrane of Escherichia coli [Lill, R., Dowhan, W., & Wickner, W. (1990) Cell 60, 271-280]. SecA insertion into the phospholipid bilayer could a role in this process. We investigated this possibility by st...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00119a021

    authors: Breukink E,Demel RA,de Korte-Kool G,de Kruijff B

    更新日期:1992-02-04 00:00:00

  • Activation of DNA cleavage by dynemicin A in a B-Z conformational junction.

    abstract::We report here that the DNA strand scission by dynemicin A is not only sequence-specific but also conformation-specific. The salt-induced B----Z conformational transition dramatically enhanced the cleavage by dynemicin A in a B-Z junction region. By contrast, the bleomycin-Fe(II) complex, the elsamicin A-Fe(II) comple...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00144a019

    authors: Ichikawa A,Kuboya T,Aoyama T,Sugiura Y

    更新日期:1992-07-28 00:00:00

  • Association of botulinum neurotoxin serotypes a and B with synaptic vesicle protein complexes.

    abstract::Botulinum neurotoxins (BoNTs) elicit flaccid paralysis through cleavage of SNARE proteins within peripheral neurons. There are seven serotypes of the BoNTs, termed A-G, which differ in the SNARE protein and/or site that is cleaved. BoNTs are single-chain toxins that comprise an N-terminal zinc metalloprotease domain t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602396x

    authors: Baldwin MR,Barbieri JT

    更新日期:2007-03-20 00:00:00

  • Supramolecular self-assembly of Escherichia coli glutamine synthetase: characterization of dodecamer stacking and high order association.

    abstract::Dodecameric glutamine synthetase (GS) from bacteria is formed from two face-to-face hexameric rings of identical subunits. These highly symmetrical aggregates from some bacteria, including Escherichia coli, "stack" in the presence of Zn2+ and other divalent ions to generate protein tubes (phase I) and subsequently ass...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00254a001

    authors: Yanchunas J Jr,Dabrowski MJ,Schurke P,Atkins WM

    更新日期:1994-12-20 00:00:00

  • Design of a selective insulin receptor tyrosine kinase inhibitor and its effect on glucose uptake and metabolism in intact cells.

    abstract::An inhibitor of the insulin receptor tyrosine kinase (IRTK), (hydroxy-2-naphthalenyl-methyl) phosphonic acid, was designed and synthesized and was shown to be an inhibitor of the biological effects of insulin in vitro. With a wheat germ purified human placental insulin receptor preparation, this compound inhibited the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00439a053

    authors: Saperstein R,Vicario PP,Strout HV,Brady E,Slater EE,Greenlee WJ,Ondeyka DL,Patchett AA,Hangauer DG

    更新日期:1989-06-27 00:00:00

  • Fate of the (2Fe-2S)(2+) cluster of Escherichia coli biotin synthase during reaction: a Mössbauer characterization.

    abstract::Biotin synthase, the enzyme which catalyzes the last step of the biosynthesis of biotin, contains only (2Fe-2S)(2+) clusters when isolated under aerobic conditions. Previous results showed that reduction by dithionite or photoreduced deazaflavin converts the (2Fe-2S)(2+) to (4Fe-4S)(2+,+). However, until now, no detai...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034426c

    authors: Tse Sum Bui B,Benda R,Schünemann V,Florentin D,Trautwein AX,Marquet A

    更新日期:2003-07-29 00:00:00

  • Systematic evaluation of candidate ligands regulating ectodomain shedding of amyloid precursor protein.

    abstract::Despite intense interest in the proteolysis of the β-Amyloid Precursor Protein (APP) in Alzheimer's disease, how the normal processing of this type I receptor-like glycoprotein is physiologically regulated remains ill-defined. In recent years, several candidate protein ligands for APP, including F-spondin, Reelin, β1 ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400165f

    authors: Rice HC,Young-Pearse TL,Selkoe DJ

    更新日期:2013-05-14 00:00:00

  • Synthetic Riboswitches: From Plug and Pray toward Plug and Play.

    abstract::In synthetic biology, metabolic engineering, and gene therapy, there is a strong demand for orthogonal or externally controlled regulation of gene expression. Here, RNA-based regulatory devices represent a promising emerging alternative to proteins, allowing a fast and direct control of gene expression, as no synthesi...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.6b01218

    authors: Etzel M,Mörl M

    更新日期:2017-03-07 00:00:00

  • Sequence of a rabbit anti-Micrococcus lysodeikticus antibody light chain.

    abstract::The complete sequence of rabbit antibody light-chain L 120 has been elucidated. The antibody was raised against Micrococcus lysodeikticus bacteria and is specific for the external part of the cell wall. All protein used in this work was obtained from a single 50-mL bleeding. The variable region of L 120 is compared to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00613a031

    authors: Van Hoegaerden M,Strosberg AD

    更新日期:1978-10-03 00:00:00

  • Structural characterization of the ATP-hydrolyzing portion of the coated vesicle proton pump.

    abstract::The ATP-hydrolyzing portion of the proton pump from clathrin-coated vesicles (isolated from calf brain) was solubilized with three nondenaturing detergents (cholate, octyl glucoside, and Triton X-100). The hydrodynamic properties of the solubilized (Mg2+)-ATPase were then determined by sedimentation analysis in H2O an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00363a015

    authors: Forgac M,Berne M

    更新日期:1986-07-29 00:00:00

  • Phenylalanyl-tRNA synthetases of rat liver: differential effects of thyroid hormone.

    abstract::Thyroxine and analogues inhibit rat liver aminoacyl-tRNA synthetase activity for phenylalanine and tyrosine. A high yield purification of the major cytoplasmic form of phenylalanyl-tRNA synthetase (C1) and its characterization is reported. Polyribosome-bound and other sedimentable forms are found to be indistinguishab...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00647a017

    authors: Nielsen JB,Haschemeyer AE

    更新日期:1976-01-27 00:00:00

  • Activated leukocytes oxidatively damage DNA, RNA, and the nucleotide pool through halide-dependent formation of hydroxyl radical.

    abstract::A variety of chronic inflammatory conditions are associated with an increased risk for the development of cancer. Because of the numerous links between DNA oxidative damage and carcinogenesis, a potential role for leukocyte-generated oxidants in these processes has been suggested. In the present study, we demonstrate ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992809y

    authors: Shen Z,Wu W,Hazen SL

    更新日期:2000-05-09 00:00:00

  • Modulating Integrin αIIbβ3 Activity through Mutagenesis of Allosterically Regulated Intersubunit Contacts.

    abstract::Integrin αIIbβ3, a transmembrane heterodimer, mediates platelet aggregation when it switches from an inactive to an active ligand-binding conformation following platelet stimulation. Central to regulating αIIbβ3 activity is the interaction between the αIIb and β3 extracellular stalks, which form a tight heterodimer in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00430

    authors: Tan SK,Fong KP,Polizzi NF,Sternisha A,Slusky JSG,Yoon K,DeGrado WF,Bennett JS

    更新日期:2019-07-30 00:00:00

  • Microfibril-associated glycoprotein: characterization of the bovine gene and of the recombinantly expressed protein.

    abstract::Microfibrils having a diameter of 10-12 nm, found either in association with elastin or independently, are an important component of the extracellular matrix of many tissues. Because isolation of native proteins composing the microfibrils has proven difficult, information on structure/function relationships is limited...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00168a026

    authors: Bashir MM,Abrams WR,Rosenbloom J,Kucich U,Bacarra M,Han MD,Brown-Augsberger P,Mecham R,Rosenbloom J

    更新日期:1994-01-18 00:00:00

  • A ParE-ParC fusion protein is a functional topoisomerase.

    abstract::Type II topoisomerases are responsible for DNA unlinking during DNA replication and chromosome segregation. Although eukaryotic enzymes are homodimers and prokaryotic enzymes are heterotetramers, both prokaryotic and eukaryotic type II topoisomerases belong to a single protein family. The amino- and carboxyl-terminal ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0155201

    authors: Lavasani LS,Hiasa H

    更新日期:2001-07-24 00:00:00

  • Natural mutagenesis study of the human steroid 5 alpha-reductase 2 isozyme.

    abstract::The enzyme steroid 5 alpha-reductase utilizes NADPH to reduce the double bonds of a variety of steroid substrates with generalized 3-oxo, delta 4,5 structures. One substrate for this membrane-bound enzyme is testosterone, whose reduction to dihydrotestosterone is required for the embryonic differentiation of the exter...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00171a029

    authors: Wigley WC,Prihoda JS,Mowszowicz I,Mendonca BB,New MI,Wilson JD,Russell DW

    更新日期:1994-02-08 00:00:00

  • Single-amino acid substitutions alter the specificity and affinity of PDZ domains for their ligands.

    abstract::PDZ domains are modular protein-protein interaction domains that bind to specific C-terminal sequences of membrane proteins and/or to other PDZ domains. Certain PDZ domains in PSD-95 and syntrophins interact with C-terminal peptide ligands and heterodimerize with the extended nNOS PDZ domain. The capacity to interact ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi001633t

    authors: Gee SH,Quenneville S,Lombardo CR,Chabot J

    更新日期:2000-11-28 00:00:00

  • Mutational analysis of C-lobe ligands of human serum transferrin: insights into the mechanism of iron release.

    abstract::Each homologous lobe of human serum transferrin (hTF) has one Fe(3+) ion bound by an aspartic acid, a histidine, two tyrosine residues, and two oxygens from the synergistic anion, carbonate. Extensive characterization of these ligands in the N-terminal lobe has been carried out. Despite sharing the same set of ligands...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050015f

    authors: Mason AB,Halbrooks PJ,James NG,Connolly SA,Larouche JR,Smith VC,MacGillivray RT,Chasteen ND

    更新日期:2005-06-07 00:00:00

  • A mechanism for hydroxylation by tyrosine hydroxylase based on partitioning of substituted phenylalanines.

    abstract::The iron-containing enzyme tyrosine hydroxylase catalyzes the hydroxylation of tyrosine to dihydroxyphenylalanine. A series of 4-X-substituted (X = H, F, Br, Cl, CH3, or CH3O) phenylalanines have been characterized as substrates to gain insight into the mechanism of hydroxylation. Multiple hydroxylated products were f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9606861

    authors: Hillas PJ,Fitzpatrick PF

    更新日期:1996-06-04 00:00:00

  • Photooxidation of cytochrome b559 in oxygen-evolving photosystem II.

    abstract::Cytochrome b559 (cyt b559) is an intrinsic and essential component of the photosystem II (PSII) protein complex, but its function, stoichiometry, and electron-transfer kinetics in the physiological system are not well-defined. In this study, we have used flash-detection optical spectroscopy to measure the kinetics and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00161a025

    authors: Buser CA,Diner BA,Brudvig GW

    更新日期:1992-11-24 00:00:00

  • The Structure of the Bimolecular Complex between Amphotericin B and Ergosterol in Membranes Is Stabilized by Face-to-Face van der Waals Interaction with Their Rigid Cyclic Cores.

    abstract::Amphotericin B (AmB) is a polyene macrolide antibiotic isolated from Streptomyces nodosus. The antifungal activity of AmB can be attributed to the formation of an ion-channel assembly in the presence of ergosterol (Erg), in which there are two different AmB-Erg orientations, parallel and antiparallel, as reported prev...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00193

    authors: Nakagawa Y,Umegawa Y,Matsushita N,Yamamoto T,Tsuchikawa H,Hanashima S,Oishi T,Matsumori N,Murata M

    更新日期:2016-06-21 00:00:00

  • Selection and characterization of a new class of peptide exosite inhibitors of coagulation factor VIIa.

    abstract::A new series of peptide inhibitors of human Factor VIIa (FVIIa) has been identified and affinity matured from naive and partially randomized peptide phage libraries selected against the immobilized tissue factor x Factor VIIa (TF x FVIIa) complex. These "A-series" peptides contain a single disulfide bond and a 13-resi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010591l

    authors: Dennis MS,Roberge M,Quan C,Lazarus RA

    更新日期:2001-08-14 00:00:00

  • Affinity labeling of aminoacyl-tRNA synthetases with adenosine triphosphopyridoxal: probing the Lys-Met-Ser-Lys-Ser signature sequence as the ATP-binding site in Escherichia coli methionyl-and valyl-tRNA synthetases.

    abstract::Pyridoxal 5'-triphospho-5'-adenosine (AP3-PL), the affinity labeling reagent specific for lysine residues in the nucleotide-binding site of several enzymes [Tagaya, M., & Fukui, T. (1986) Biochemistry 25, 2958-2964; Yagami, T., Tagaya, M., & Fukui, T. (1988) FEBS Lett. 229, 261-264], was used to identify the ATP-bindi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00503a016

    authors: Hountondji C,Schmitter JM,Fukui T,Tagaya M,Blanquet S

    更新日期:1990-12-25 00:00:00

  • Large activation energy barriers to chaperone-peptide complex formation and dissociation.

    abstract::To probe the mechanism of chaperone substrate selection, we have investigated the kinetics of complex formation and dissociation between the molecular chaperone DnaK and a short peptide (Cro, representing amino acids 1-12 of the cro repressor protein). The Cro protein was N-terminally labeled with the environmentally ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00047a024

    authors: Farr CD,Galiano FJ,Witt SN

    更新日期:1995-11-28 00:00:00

  • Clonal analysis of the glycosylation of immunoglobulin G secreted by murine hybridomas.

    abstract::A panel of 10 hybridomas was assembled to assess the influence of various genetic and biological factors upon glycosylation of secreted monoclonal IgG. After exhaustive Pronase digestion of IgG, glycopeptides were characterized chromatographically by apparent size, charge, and concanavalin A (Con A)-Sepharose and Lens...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00429a065

    authors: Rothman RJ,Warren L,Vliegenthart JF,Härd KJ

    更新日期:1989-02-07 00:00:00

  • Interactions of human melanocortin 4 receptor with nonpeptide and peptide agonists.

    abstract::Specific interactions of human melanocortin-4 receptor (hMC4R) with its nonpeptide and peptide agonists were studied using alanine-scanning mutagenesis. The binding affinities and potencies of two synthetic, small-molecule agonists (THIQ, MB243) were strongly affected by substitutions in transmembrane alpha-helices (T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0501840

    authors: Pogozheva ID,Chai BX,Lomize AL,Fong TM,Weinberg DH,Nargund RP,Mulholland MW,Gantz I,Mosberg HI

    更新日期:2005-08-30 00:00:00