A kinetic assessment of the sequence of electron transfer from F(X) to F(A) and further to F(B) in photosystem I: the value of the equilibrium constant between F(X) and F(A).

Abstract:

:The x-ray structure analysis of photosystem I (PS I) crystals at 4-A resolution (Schubert et al., 1997, J. Mol. Biol. 272:741-769) has revealed the distances between the three iron-sulfur clusters, labeled F(X), F(1), and F(2), which function on the acceptor side of PS I. There is a general consensus concerning the assignment of the F(X) cluster, which is bound to the PsaA and PsaB polypeptides that constitute the PS I core heterodimer. However, the correspondence between the acceptors labeled F(1) and F(2) on the electron density map and the F(A) and F(B) clusters defined by electron paramagnetic resonance (EPR) spectroscopy remains controversial. Two recent studies (Diaz-Quintana et al., 1998, Biochemistry. 37:3429-3439;, Vassiliev et al., 1998, Biophys. J. 74:2029-2035) provided evidence that F(A) is the cluster proximal to F(X), and F(B) is the cluster that donates electrons to ferredoxin. In this work, we provide a kinetic argument to support this assignment by estimating the rates of electron transfer between the iron-sulfur clusters F(X), F(A), and F(B). The experimentally determined kinetics of P700(+) dark relaxation in PS I complexes (both F(A) and F(B) are present), HgCl(2)-treated PS I complexes (devoid of F(B)), and P700-F(X) cores (devoid of both F(A) and F(B)) from Synechococcus sp. PCC 6301 are compared with the expected dependencies on the rate of electron transfer, based on the x-ray distances between the cofactors. The analysis, which takes into consideration the asymmetrical position of iron-sulfur clusters F(1) and F(2) relative to F(X), supports the F(X) --> F(A) --> F(B) --> Fd sequence of electron transfer on the acceptor side of PS I. Based on this sequence of electron transfer and on the observed kinetics of P700(+) reduction and F(X)(-) oxidation, we estimate the equilibrium constant of electron transfer between F(X) and F(A) at room temperature to be approximately 47. The value of this equilibrium constant is discussed in the context of the midpoint potentials of F(X) and F(A), as determined by low-temperature EPR spectroscopy.

journal_name

Biophys J

journal_title

Biophysical journal

authors

Shinkarev VP,Vassiliev IR,Golbeck JH

doi

10.1016/S0006-3495(00)76599-4

subject

Has Abstract

pub_date

2000-01-01 00:00:00

pages

363-72

issue

1

eissn

0006-3495

issn

1542-0086

pii

S0006-3495(00)76599-4

journal_volume

78

pub_type

杂志文章
  • The role of diffusion in enzyme kinetics.

    abstract::A discussion is given of the general role of diffusion in enzyme kinetics based upon a rigorous theory for bimolecular association and dissociation steps that was presented previously, and criteria are formulated for the dependence of the over-all rate on medium viscosity. With these criteria it is possible to conclud...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(70)86331-7

    authors: Schurr JM

    更新日期:1970-08-01 00:00:00

  • Structural Impact of Phosphorylation and Dielectric Constant Variation on Synaptotagmin's IDR.

    abstract::We used time-resolved Förster resonance energy transfer, circular dichroism, and molecular dynamics simulation to investigate the structural dependence of synaptotagmin 1's intrinsically disordered region (IDR) on phosphorylation and dielectric constant. We found that a peptide corresponding to the full-length IDR seq...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2017.12.013

    authors: Fealey ME,Binder BP,Uversky VN,Hinderliter A,Thomas DD

    更新日期:2018-02-06 00:00:00

  • Constant pH molecular dynamics with proton tautomerism.

    abstract::The current article describes a new two-dimensional lambda-dynamics method to include proton tautomerism in continuous constant pH molecular dynamics (CPHMD) simulations. The two-dimensional lambda-dynamics framework is used to devise a tautomeric state titration model for the CPHMD simulations involving carboxyl and ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.105.061341

    authors: Khandogin J,Brooks CL 3rd

    更新日期:2005-07-01 00:00:00

  • Ground and excited states of retinal schiff base chromophores by multiconfigurational perturbation theory.

    abstract::We have studied the wavelength dependence of retinal Schiff base absorbencies on the protonation state of the chromophore at the multiconfigurational level of theory using second order perturbation theory (CASPT2) within an atomic natural orbital basis set on MP2 optimized geometries. Quantitative agreement between ca...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.106.087122

    authors: Sekharan S,Weingart O,Buss V

    更新日期:2006-07-01 00:00:00

  • The polymer brush model of neurofilament projections: effect of protein composition.

    abstract::Applying self-consistent field theory, we consider a coarse-grained model for the polymerlike projections of neurofilament (NF) proteins that form a brush structure around neurofilaments. We focus on effects of molecular composition, which is the relative occurrence of NF-H, NF-M, and NF-L proteins, on the organizatio...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2009.10.033

    authors: Zhulina EB,Leermakers FA

    更新日期:2010-02-03 00:00:00

  • A dynamic model of smooth muscle contraction.

    abstract::A dynamic model of smooth muscle contraction is presented and is compared with the mechanical properties of vascular smooth muscle in the rat portal vein. The model is based on the sliding filament theory and the assumption that force is produced by cross-bridges extending from the myosin to the actin filaments. Thus,...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(86)83448-8

    authors: Gestrelius S,Borgström P

    更新日期:1986-07-01 00:00:00

  • New ordered metastable phases between the gel and subgel phases in hydrated phospholipids.

    abstract::Formation of low-temperature ordered gel phases in several fully hydrated phosphatidylethanolamines (PEs) and phosphatidylcholines (PCs) with saturated chains as well as in dipalmitoylphosphatidylglycerol (DPPG) was observed by synchrotron x-ray diffraction, microcalorimetry, and densitometry. The diffraction patterns...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(01)76157-7

    authors: Tenchov B,Koynova R,Rapp G

    更新日期:2001-04-01 00:00:00

  • Assembly-associated structural changes of bacteriophage T7 capsids. Detection by use of a protein-specific probe.

    abstract::To detect changes in capsid structure that occur when a preassembled bacteriophage T7 capsid both packages and cleaves to mature-size longer (concatameric) DNA, the kinetics and thermodynamics are determined here for the binding of the protein-specific probe, 1,1'-bi(4-anilino)naphthalene-5,5'-di-sulfonic acid (bis-AN...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(92)81724-1

    authors: Khan SA,Griess GA,Serwer P

    更新日期:1992-11-01 00:00:00

  • Energy transfer and charge separation kinetics in photosystem I: Part 1: Picosecond transient absorption and fluorescence study of cyanobacterial photosystem I particles.

    abstract::The energy transfer and charge separation kinetics of a photosystem I (PS I) core particle of an antenna size of 100 chlorophyll/P700 has been studied by combined fluorescence and transient absorption kinetics with picosecond resolution. This is the first combined picosecond study of transient absorption and fluoresce...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(93)81552-2

    authors: Holzwarth AR,Schatz G,Brock H,Bittersmann E

    更新日期:1993-06-01 00:00:00

  • Molecular dynamics simulations of mixed acidic/zwitterionic phospholipid bilayers.

    abstract::Anionic lipids are key components in the cell membranes. Many cell-regulatory and signaling mechanisms depend upon a complicated interplay between them and membrane-bound proteins. Phospholipid bilayers are commonly used as model systems in experimental or theoretical studies to gain insight into the structure and dyn...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2010.04.064

    authors: Broemstrup T,Reuter N

    更新日期:2010-08-04 00:00:00

  • In situ muGISAXS: I. Experimental setup for submicron study of protein nucleation and growth.

    abstract::In this study, we used microbeam grazing-incidence small-angle x-ray scattering (muGISAXS) to investigate in situ protein nucleation and crystal growth assisted by a protein nanotemplate, and introduced certain innovations to improve the method. Our aim was to understand the protein nanotemplate method in detail, as t...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2010.03.069

    authors: Gebhardt R,Pechkova E,Riekel C,Nicolini C

    更新日期:2010-08-09 00:00:00

  • Local oxygen gradients near isolated mitochondria.

    abstract::The oxygen concentration in tissue can vary on several length scales. The basic scale of variation is determined by capillary spacing. It is this scale that is manifest in the simplest Krogh cylinder model. A second, smaller scale of variation is associated with the consumption of oxygen by mitochondria. This paper gi...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(85)83856-X

    authors: Clark A Jr,Clark PA

    更新日期:1985-12-01 00:00:00

  • Sphingolipid partitioning into ordered domains in cholesterol-free and cholesterol-containing lipid bilayers.

    abstract::We have used fluorescence-quenching measurements to characterize the partitioning of a variety of indolyl-labeled phospho- and sphingolipids between gel or liquid-ordered and liquid-disordered lipid domains in several types of lipid bilayers where such domains coexist. In both cholesterol-free and cholesterol-containi...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(03)74857-7

    authors: Wang TY,Silvius JR

    更新日期:2003-01-01 00:00:00

  • Events leading to the opening and closing of the exocytotic fusion pore have markedly different temperature dependencies. Kinetic analysis of single fusion events in patch-clamped mouse mast cells.

    abstract::The earliest event in exocytosis is the formation of a fusion pore, an aqueous channel that connects the lumen of a secretory granule with the extracellular space. We can observe the formation of individual fusion pores and their subsequent dilation or closure by measuring the changes in the admittance of patch-clampe...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(92)81884-2

    authors: Oberhauser AF,Monck JR,Fernandez JM

    更新日期:1992-03-01 00:00:00

  • Laser flow measurements of scattering and fluorescence from cell nuclei in the presence of increasing Mg++ concentrations.

    abstract::The effects of Mg++ on the spatial organization of nuclei from rat hepatocytes are analyzed in the range 0-60 mM, in the presence of suitable concentrations of KCl to reproduce physiological conditions. It is shown that the scatter-signal distribution measured by means of a flow microfluorimeter is greatly affected by...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(85)83938-2

    authors: Grattarola M,Carlo P,Giannetti G,Finollo R,Viviani R,Chiabrera A

    更新日期:1985-04-01 00:00:00

  • Ultrafast dynamics of phytochrome from the cyanobacterium synechocystis, reconstituted with phycocyanobilin and phycoerythrobilin.

    abstract::Femtosecond time-resolved transient absorption spectroscopy was employed to characterize for the first time the primary photoisomerization dynamics of a bacterial phytochrome system in the two thermally stable states of the photocycle. The 85-kDa phytochrome Cph1 from the cyanobacterium Synechocystis PCC 6803 expresse...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(02)75460-X

    authors: Heyne K,Herbst J,Stehlik D,Esteban B,Lamparter T,Hughes J,Diller R

    更新日期:2002-02-01 00:00:00

  • Piezoelectric and related properties of hydrated collagen.

    abstract::Two piezoelectric constants (polarization per unit stress, d=d'-id'', and polarization per unit strain, e=e'-ie''), the elastic constant, and dielectric constant are determined for oriented collagen at different hydration levels at 10 Hz from -150 to 50 degrees C. With no hydration (approximately 0% H2O), d' increases...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(76)85741-4

    authors: Fukada E,Ueda H,Rinaldi R

    更新日期:1976-08-01 00:00:00

  • Interfacial Binding Sites for Cholesterol on TRP Ion Channels.

    abstract::Transient receptor potential (TRP) channels are members of a large family of ion channels located in membranes rich in cholesterol, some of whose functions are affected by the cholesterol content of the membrane. Here, cholesterol binding to TRPs is studied using a docking procedure that allows the transmembrane surfa...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2019.10.011

    authors: Lee AG

    更新日期:2019-11-19 00:00:00

  • Excited state trapping and the Stepanov relation with reference to Photosystem I.

    abstract::It has been previously demonstrated that the Stepanov equation provides a rather good description of the absorption/fluorescence spectra in Photosystem I, even though excited state equilibration is not rapid with respect to the excited state decay. In the present article this apparent contradiction is examined analyti...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(03)74805-X

    authors: Jennings RC,Garlaschi FM,Zucchelli G

    更新日期:2003-12-01 00:00:00

  • A model of effective diffusion and tortuosity in the extracellular space of the brain.

    abstract::Tortuosity of the extracellular space describes hindrance posed to the diffusion process by a geometrically complex medium in comparison to an environment free of any obstacles. Calculating tortuosity in biologically relevant geometries is difficult. Yet this parameter has proved very important for many processes in t...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.103.039495

    authors: Hrabe J,Hrabetová S,Segeth K

    更新日期:2004-09-01 00:00:00

  • Regulation of protein mobility in cell membranes: a dynamic corral model.

    abstract::We analyze a two-state stochastic corral model for regulation of protein diffusion in a cell membrane. This model could mimic control of protein transport in the membrane by the cytoskeleton. The dynamic corral acts as a gate which when open permits an otherwise trapped protein to escape to a neighboring corral in the...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(00)76579-9

    authors: Leitner DM,Brown FL,Wilson KR

    更新日期:2000-01-01 00:00:00

  • Kinesin and dynein-dynactin at intersecting microtubules: motor density affects dynein function.

    abstract::Kinesin and cytoplasmic dynein are microtubule-based motor proteins that actively transport material throughout the cell. Microtubules can intersect at a variety of angles both near the nucleus and at the cell periphery, and the behavior of molecular motors at these intersections has implications for long-range transp...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1529/biophysj.107.120014

    authors: Ross JL,Shuman H,Holzbaur EL,Goldman YE

    更新日期:2008-04-15 00:00:00

  • Human apolipoprotein H may have various orientations when attached to lipid layer.

    abstract::Apolipoprotein H (ApoH), also known as beta(2)-glycoprotein I, is a plasma glycoprotein with its in vivo physiological and pathogenic roles being closely related to its interaction with negatively charged membranes. Although the three-dimensional crystal structure of ApoH has been recently solved, direct evidence abou...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(02)75224-7

    authors: Wang F,Xia XF,Sui SF

    更新日期:2002-08-01 00:00:00

  • Atomic force microscope image contrast mechanisms on supported lipid bilayers.

    abstract::This work presents a methodology to measure and quantitatively interpret force curves on supported lipid bilayers in water. We then use this method to correlate topographic imaging contrast in atomic force microscopy (AFM) images of phase-separated Langmuir-Blodgett bilayers with imaging load. Force curves collected o...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(00)76364-8

    authors: Schneider J,Dufrêne YF,Barger WR Jr,Lee GU

    更新日期:2000-08-01 00:00:00

  • In situ structural studies of Anabaena sensory rhodopsin in the E. coli membrane.

    abstract::Magic-angle spinning nuclear magnetic resonance is well suited for the study of membrane proteins in the nativelike lipid environment. However, the natural cellular membrane is invariably more complex than the proteoliposomes most often used for solid-state NMR (SSNMR) studies, and differences may affect the structure...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2015.02.018

    authors: Ward ME,Wang S,Munro R,Ritz E,Hung I,Gor'kov PL,Jiang Y,Liang H,Brown LS,Ladizhansky V

    更新日期:2015-04-07 00:00:00

  • Application of fluorescence spectroscopy to quantify shear-induced protein conformation change.

    abstract::Rapid and robust methods are required to quantify the effect of hydrodynamic shear on protein conformation change. We evaluated such strategies in this work and found that the binding of the fluorescent probe 4,4'-dianilino-1,1'-binaphthyl-5,5'-disulfonic acid (bis-ANS) to hydrophobic pockets in the blood protein von ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2009.08.023

    authors: Themistou E,Singh I,Shang C,Balu-Iyer SV,Alexandridis P,Neelamegham S

    更新日期:2009-11-04 00:00:00

  • Evaluating the performance of time-gated live-cell microscopy with lanthanide probes.

    abstract::Probes and biosensors that incorporate luminescent Tb(III) or Eu(III) complexes are promising for cellular imaging because time-gated microscopes can detect their long-lifetime (approximately milliseconds) emission without interference from short-lifetime (approximately nanoseconds) fluorescence background. Moreover, ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2015.06.028

    authors: Rajendran M,Miller LW

    更新日期:2015-07-21 00:00:00

  • Active site coupling in PDE:PKA complexes promotes resetting of mammalian cAMP signaling.

    abstract::Cyclic 3'5' adenosine monophosphate (cAMP)-dependent-protein kinase (PKA) signaling is a fundamental regulatory pathway for mediating cellular responses to hormonal stimuli. The pathway is activated by high-affinity association of cAMP with the regulatory subunit of PKA and signal termination is achieved upon cAMP dis...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2014.07.050

    authors: Krishnamurthy S,Moorthy BS,Xin Xiang L,Xin Shan L,Bharatham K,Tulsian NK,Mihalek I,Anand GS

    更新日期:2014-09-16 00:00:00

  • A quantitative description of equilibrium and homeostatic thickness regulation in the in vivo cornea. I. Normal cornea.

    abstract::By combining a description of the coupled solute and water flows through the in vivo cornea with a set of appropriate mechanical equilibrium conditions, it is possible to calculate directly the corneal thickness, given the corneal temperature, the state of the aqueous and tears, the swelling pressure-hydration relatio...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/S0006-3495(72)86110-1

    authors: Friedman MH

    更新日期:1972-06-01 00:00:00

  • Self-assembly and conformational heterogeneity of the AXH domain of ataxin-1: an unusual example of a chameleon fold.

    abstract::Ataxin-1 is a human protein responsible for spinocerebellar ataxia type 1, a hereditary disease associated with protein aggregation and misfolding. Essential for ataxin-1 aggregation is the anomalous expansion of a polyglutamine tract near the protein N-terminus, but the sequence-wise distant AXH domain modulates and ...

    journal_title:Biophysical journal

    pub_type: 杂志文章

    doi:10.1016/j.bpj.2013.01.048

    authors: de Chiara C,Rees M,Menon RP,Pauwels K,Lawrence C,Konarev PV,Svergun DI,Martin SR,Chen YW,Pastore A

    更新日期:2013-03-19 00:00:00