Characterization of unique DNA-binding and transcriptional-activation functions in the carboxyl-terminal extension of the zinc finger region in the human vitamin D receptor.

Abstract:

:The vitamin D receptor (VDR) binds 1,25-dihydroxyvitamin D(3) and mediates its actions on gene transcription by heterodimerizing with retinoid X receptors (RXRs) on direct repeat (DR+3) vitamin D responsive elements (VDREs) located in target genes. The VDRE binding function of VDR has been primarily ascribed to the zinc finger region (residues 24-87). To define the minimal VDRE binding domain for human VDR (hVDR), a series of C-terminally truncated hVDR mutants (Delta134, Delta113, Delta102, Delta90, Delta84, Delta80, and Delta60) was generated and expressed in bacteria. Only the Delta134 and Delta113 mutants bound the VDRE (predominantly as monomers), suggesting that, in addition to the conserved zinc finger region of hVDR, as many as 25 amino acids in a C-terminal extension (CTE) participate in DNA binding. Site-directed mutagenesis of conserved charged residues in full-length hVDR was then performed to dissect the functional significance of the CTE (residues 88-112) in the context of the complete hVDR-RXR-VDRE interaction. Functional assays revealed that E98K/E99K, R102A/K103A/R104A, and K109A/R110A/K111A mutant hVDRs possessed dramatically reduced DNA binding and transcriptional activities, whereas distinct point mutants, such as K103A, bound to DNA normally but lacked transcriptional activity. Therefore, the boundary for the minimal DNA-binding domain in hVDR extends C-terminal of the zinc fingers to Lys-111, with clusters of highly conserved charged amino acids playing a crucial role in binding to the DR+3 element. Further, individual residues in this region (e.g., Lys-103) may lie on the opposing face of a DNA-binding alpha-helix, where they could contact transcriptional coactivators or basal transcription factors.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Hsieh JC,Whitfield GK,Oza AK,Dang HT,Price JN,Galligan MA,Jurutka PW,Thompson PD,Haussler CA,Haussler MR

doi

10.1021/bi9916574

subject

Has Abstract

pub_date

1999-12-07 00:00:00

pages

16347-58

issue

49

eissn

0006-2960

issn

1520-4995

pii

bi9916574

journal_volume

38

pub_type

杂志文章
  • Structural insights into the prereaction state of pyruvate decarboxylase from Zymomonas mobilis .

    abstract::Pyruvate decarboxylase (PDC) uses thiamine diphosphate as an essential cofactor to catalyze the formation of acetaldehyde on the pathway of ethanol synthesis. Here we report the crystallographic image of a prereaction intermediate of a bacterial pyruvate decarboxylase prepared by cocrystallizing the enzyme with pyruva...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901864j

    authors: Pei XY,Erixon KM,Luisi BF,Leeper FJ

    更新日期:2010-03-02 00:00:00

  • Histone H2A phosphorylation in animal cells: functional considerations.

    abstract::We have sought to determine the role of histone H2A phosphorylation in chromatin by examining the distribution of the phosphorylated and unphosphorylated forms of this core histone within the nuclei of mouse and human cells. At any time, only about 15% of the H2A of whole chromatin is in the phosphorylated form, and i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00539a021

    authors: Prentice DA,Loechel SC,Kitos PA

    更新日期:1982-05-11 00:00:00

  • Characterization of ribonucleic acid polymerase-T7 promoter binary complexes.

    abstract::Several experimental approaches have been employed to independently determine rates of dissociation for Escherichia coli RNA polymerase from the T7 bacteriophage A1, A2, A3, and D promoters. Heparin challenge measurements employing abortive initiation turnover rates as an index of promoter occupancy were carried out o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00552a023

    authors: Cech CL,McClure WR

    更新日期:1980-05-27 00:00:00

  • Determination of the three-dimensional solution structure of barnase using nuclear magnetic resonance spectroscopy.

    abstract::The solution conformation of the ribonuclease barnase has been determined by using 1H nuclear magnetic resonance (NMR) spectroscopy. The 20 structures were calculated by using 853 interproton distance restraints obtained from analyses of two-dimensional nuclear Overhauser spectra, 72 phi and 53 chi 1 torsion angle res...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00099a030

    authors: Bycroft M,Ludvigsen S,Fersht AR,Poulsen FM

    更新日期:1991-09-03 00:00:00

  • Role of the helical structure of the N-terminal region of Plasmodium falciparum merozoite surface protein 2 in fibril formation and membrane interaction.

    abstract::Merozoite surface protein 2 (MSP2), an abundant glycosylphosphatidylinositol-anchored protein on the surface of Plasmodium falciparum merozoites, is a promising malaria vaccine candidate. MSP2 is intrinsically disordered and forms amyloid-like fibrils in solution under physiological conditions. The 25 N-terminal resid...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201880s

    authors: Zhang X,Adda CG,Low A,Zhang J,Zhang W,Sun H,Tu X,Anders RF,Norton RS

    更新日期:2012-02-21 00:00:00

  • Microsecond folding of the cold shock protein measured by a pressure-jump technique.

    abstract::A pressure-jump apparatus was employed in investigating the kinetics of protein unfolding and refolding. In the reaction cell, the pressure can be increased or decreased by 100-160 bar within 50-100 microseconds and then held constant. Thus, unfolding and refolding reactions in the time range from 70 microseconds to 7...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982487i

    authors: Jacob M,Holtermann G,Perl D,Reinstein J,Schindler T,Geeves MA,Schmid FX

    更新日期:1999-03-09 00:00:00

  • Evidence that the principal CoII-binding site in human serum albumin is not at the N-terminus: implication on the albumin cobalt binding test for detecting myocardial ischemia.

    abstract::Human serum albumin (HSA) is the most abundant protein in the blood plasma and is involved in the transport of metal ions. Four metal-binding sites with different specificities have been described in HSA: (i) the N-terminal site provided by Asp1, Ala2, and His3, (ii) the site at the reduced Cys34, (iii) site A, includ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061783p

    authors: Mothes E,Faller P

    更新日期:2007-02-27 00:00:00

  • Active site residues of glutamate racemase.

    abstract::Glutamate racemase, MurI, catalyzes the interconversion of glutamate enantiomers in a cofactor-independent fashion and provides bacteria with a source of D-Glu for use in peptidoglycan biosynthesis. The enzyme uses a "two-base" mechanism involving a deprotonation of the substrate at the alpha-position to form an anion...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002703z

    authors: Glavas S,Tanner ME

    更新日期:2001-05-29 00:00:00

  • Nuclear Overhauser effect as a tool for the complete assignment of nonexchangeable proton resonances in short deoxyribonucleic acid helices.

    abstract::A new strategy for the assignment of nonexchangeable proton resonances in oligonucleotide duplexes is presented and used to interpret the spectra of the oligonucleotide helix d(CpGpCpGpCpG) X d(CpGpCpGpCpG) in low salt (B form). This procedure is based on the use of sequential homodecoupling (1D) or COSY (2D) for the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00291a020

    authors: Frechet D,Cheng DM,Kan LS,Ts'o PO

    更新日期:1983-10-25 00:00:00

  • Reversible unfolding of ribosomal protein E-L30: an NMR study.

    abstract::Ribosomal protein E-L30 unfolds reversibly at pH values between 7.0 and 4.5. Unfolding of the protein involves a fast and a slow equilibrium, which depend on the degree of protonation of His19 and His33. Both the fast equilibrium between protonated and deprotonated histidines and the slow equilibrium between folded an...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00391a050

    authors: van de Ven FJ,Hilbers CW

    更新日期:1987-08-25 00:00:00

  • Copurification of the FpvA ferric pyoverdin receptor of Pseudomonas aeruginosa with its iron-free ligand: implications for siderophore-mediated iron transport.

    abstract::The Pseudomonas aeruginosa FpvA receptor is a TonB-dependent outer membrane transport protein that catalyzes uptake of ferric pyoverdin across the outer membrane. Surprisingly, FpvA expressed in P. aeruginosa grown in an iron-deficient medium copurifies with a ligand X that we have characterized by UV, fluorescence, a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990421x

    authors: Schalk IJ,Kyslik P,Prome D,van Dorsselaer A,Poole K,Abdallah MA,Pattus F

    更新日期:1999-07-20 00:00:00

  • Isolation, physicochemical properties, and macromolecular composition of zona pellucida from porcine oocytes.

    abstract::Oocytes released en masse from pig ovaries were isolated in large quantities by using sieving techniques. The isolated oocytes were gently homogenized, and the largely intact zona pellucida "ghosts" were purified by using sieving techniques. Sufficient amounts of zonae were recovered to permit, for the first time, ade...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00543a017

    authors: Dunbar BS,Wardrip NJ,Hedrick JL

    更新日期:1980-01-22 00:00:00

  • Chromium(III) modification of the first metal binding site of phosphoenolpyruvate carboxykinase.

    abstract::Chicken liver phosphoenolpyruvate carboxykinase (PEPCK) is activated by Cr2+ as the sole activator under anaerobic conditions. PEPCK was modified with Cr3+, starting with either Cr2+ or Cr3+. Cr3+ has the distinct advantage of being a paramagnetic cation that could serve as a paramagnetic probe. Activators Mn2+, Mg2+,...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9807299

    authors: Hlavaty JJ,Nowak T

    更新日期:1998-06-02 00:00:00

  • Toward an understanding of the mechanism of nonphotochemical quenching in green plants.

    abstract::Oxygenic photosynthesis in plants involves highly reactive intermediates and byproducts that can damage the photosynthetic apparatus and other chloroplast constituents. The potential for damage is exacerbated when the amount of absorbed light exceeds the capacity for light energy utilization in photosynthesis, a condi...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi0494020

    authors: Holt NE,Fleming GR,Niyogi KK

    更新日期:2004-07-06 00:00:00

  • An internal cysteine plays a role in the maintenance of the latency of human fibroblast collagenase.

    abstract::The cDNA that encodes the proenzyme form of human fibroblast collagenase has been expressed in Escherichia coli. It has been shown by a number of criteria to be functionally identical with the enzyme isolated from human sources. Mutations of each of three cysteine residues found in procollagenase were constructed by s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00217a008

    authors: Windsor LJ,Birkedal-Hansen H,Birkedal-Hansen B,Engler JA

    更新日期:1991-01-22 00:00:00

  • Macrophage oxidation of L-arginine to nitrite and nitrate: nitric oxide is an intermediate.

    abstract::Previous studies have shown that murine macrophages immunostimulated with interferon gamma and Escherichia coli lipopolysaccharide synthesize NO2-, NO3-, and citrulline from L-arginine by oxidation of one of the two chemically equivalent guanido nitrogens. The enzymatic activity for this very unusual reaction was foun...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00424a003

    authors: Marletta MA,Yoon PS,Iyengar R,Leaf CD,Wishnok JS

    更新日期:1988-11-29 00:00:00

  • Vitamin K dependent carboxylase: subcellular location of the carboxylase and enzymes involved in vitamin K metabolism in rat liver.

    abstract::Vitamin K dependent carboxylation of an exogenous peptide substrate and endogenous protein substrates, vitamin K epoxidation, and reduction of vitamin K epoxide were measured in subcellular fractions from rat liver. The rough microsomal fraction was highly enriched in all four activities; lower levels were found in sm...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00547a019

    authors: Carlisle TL,Suttie JW

    更新日期:1980-03-18 00:00:00

  • Purification and characteristics of photoreceptor light-activated guanosinetriphosphatase.

    abstract::We describe a reconstitution of light-activated vertebrate photoreceptor GTPase and a purification of the GTP-binding protein (G protein), which is a component of the GTPase and modulates the light-activated phosphodiesterase (PDE) enzyme system. Rod outer segments (ROS) of bull frogs were treated with ethylenediamine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00528a003

    authors: Shinozawa T,Bitensky MW

    更新日期:1981-12-08 00:00:00

  • Analysis of the kinetics of ovine follitropin agonist-antagonist interactions with pig ovarian membranes.

    abstract::The binding of 125I-labeled ovine follitropin (oFSH) and 125I-labeled deglycosylated ovine follitropin (DG-oFSH) to porcine granulosa cell membranes was studied at equilibrium and nonequilibrium binding conditions and statistically analyzed. Saturation and competition binding experiments revealed homogeneity in the po...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00386a059

    authors: Sebok K,De Lean A,Sairam MR

    更新日期:1987-06-16 00:00:00

  • Conservative tryptophan mutants of the protein tyrosine phosphatase YopH exhibit impaired WPD-loop function and crystallize with divanadate esters in their active sites.

    abstract::Catalysis in protein tyrosine phosphatases (PTPs) involves movement of a protein loop called the WPD loop that brings a conserved aspartic acid into the active site to function as a general acid. Mutation of the tryptophan in the WPD loop of the PTP YopH to any other residue with a planar, aromatic side chain (phenyla...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00496

    authors: Moise G,Gallup NM,Alexandrova AN,Hengge AC,Johnson SJ

    更新日期:2015-10-27 00:00:00

  • Development of a neutralizing antibody specific for the active form of matrix metalloproteinase-13.

    abstract::Matrix metalloproteinase-13 (MMP-13) is important in the pathology of osteoarthritis (OA). Although MMP-13 is considered a therapeutic target for OA, it is unclear how MMP-13 activity is regulated by the system that comprises various proteinases and their inhibitors. MMP-13 neutralizing antibodies could be a useful to...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi301228d

    authors: Naito S,Takahashi T,Onoda J,Yamauchi A,Kawai T,Kishino J,Yamane S,Fujii I,Fukui N,Numata Y

    更新日期:2012-11-06 00:00:00

  • Oxidative protein folding in vitro: a study of the cooperation between quiescin-sulfhydryl oxidase and protein disulfide isomerase.

    abstract::The flavin-dependent quiescin-sulfhydryl oxidase (QSOX) inserts disulfide bridges into unfolded reduced proteins with the reduction of molecular oxygen to form hydrogen peroxide. This work investigates how QSOX and protein disulfide isomerase (PDI) cooperate in vitro to generate native pairings in two unfolded reduced...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801604x

    authors: Rancy PC,Thorpe C

    更新日期:2008-11-18 00:00:00

  • Mechanism of the intramolecular Claisen condensation reaction catalyzed by MenB, a crotonase superfamily member.

    abstract::MenB, the 1,4-dihydroxy-2-naphthoyl-CoA synthase from the bacterial menaquinone biosynthesis pathway, catalyzes an intramolecular Claisen condensation (Dieckmann reaction) in which the electrophile is an unactivated carboxylic acid. Mechanistic studies on this crotonase family member have been hindered by partial acti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200877x

    authors: Li HJ,Li X,Liu N,Zhang H,Truglio JJ,Mishra S,Kisker C,Garcia-Diaz M,Tonge PJ

    更新日期:2011-11-08 00:00:00

  • Conservation of promoter melting mechanisms in divergent regions of the single-subunit RNA polymerases.

    abstract::The single-subunit RNA polymerases make up a widespread family of proteins found in phage, mitochondria, and chloroplasts. Unlike the phage RNAPs, the eukaryotic RNAPs require accessory factors to melt their promoters and diverge from the phage RNAPs in the regions where functions associated with promoter melting in t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300074j

    authors: Velazquez G,Guo Q,Wang L,Brieba LG,Sousa R

    更新日期:2012-05-08 00:00:00

  • Mammalian folylpoly-gamma-glutamate synthetase. 1. Purification and general properties of the hog liver enzyme.

    abstract::Folylpolyglutamate synthetase was purified 30,000-150,000-fold from hog liver. Purification required the use of protease inhibitors, and the protein was purified to homogeneity in two forms. Both forms of the enzyme were monomers of Mr 62,000 and had similar specific activities. The specific activity of the homogeneou...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00376a024

    authors: Cichowicz DJ,Shane B

    更新日期:1987-01-27 00:00:00

  • Structure and polymorphism of saturated monoacid 1,2-diacyl-sn-glycerols.

    abstract::The 1,2-diacyl-sn-glycerols (1,2-DGs) are the predominant naturally occurring isomer found in cell membranes, lipid droplets, and lipoproteins. They are involved in the metabolism of monoacylglycerols, triacylglycerols, and phospholipids. The 1,2-DGs participate in the activation of protein kinase C, in phosphorylatio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00500a008

    authors: Kodali DR,Fahey DA,Small DM

    更新日期:1990-12-04 00:00:00

  • 2D NMR studies of aminoglycoside antibiotics. Use of relayed coherence transfer for 1H resonance assignment and in situ structure elucidation of amikacin derivatives in reaction mixtures.

    abstract::Phase-sensitive 2D 1H/1H COSY spectra can be used to identify the structures of individual pure specimens of the aminoglycoside antibiotic amikacin and its N-hemisuccinyl derivatives. However, even at 500 MHz the 2D chemical shift dispersion does not allow for unambiguous assignment of all cross-peaks. By use of 2D re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00408a019

    authors: Andersen NH,Eaton HL,Nguyen KT,Hartzell C,Nelson RJ,Priest JH

    更新日期:1988-04-19 00:00:00

  • Kinetic, spectroscopic, and X-ray crystallographic characterization of the functional E151H aminopeptidase from Aeromonas proteolytica.

    abstract::Glutamate151 (E151) has been shown to be catalytically essential for the aminopeptidase from Vibrio proteolyticus (AAP). E151 acts as the general acid/base during the catalytic mechanism of peptide hydrolysis. However, a glutamate residue is not the only residue capable of functioning as a general acid/base during cat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0505823

    authors: Bzymek KP,Moulin A,Swierczek SI,Ringe D,Petsko GA,Bennett B,Holz RC

    更新日期:2005-09-13 00:00:00

  • Long-range structural and dynamical changes induced by cofactor binding in DNA methyltransferase M.HhaI.

    abstract::The bacterial DNA cytosine methyltransferase M.HhaI sequence-specifically modifies DNA in an S-adenosylmethionine dependent reaction. The enzyme stabilizes the target cytosine (GCGC) into an extrahelical position, with a concomitant large movement of an active site loop involving residues 80-99. We used multidimension...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602662e

    authors: Zhou H,Shatz W,Purdy MM,Fera N,Dahlquist FW,Reich NO

    更新日期:2007-06-19 00:00:00

  • Thioredoxin reductase-thioredoxin fusion enzyme from Mycobacterium leprae: comparison with the separately expressed thioredoxin reductase.

    abstract::Thioredoxin reductase (TrxR) catalyzes the reduction of thioredoxin (Trx) by NADPH. A unique gene organization of TrxR and Trx has been found in Mycobacterium leprae, where TrxR and Trx are encoded by a single gene and, therefore, are expressed as a fusion protein (MlTrxR-Trx). This fusion enzyme is able to catalyze t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980754e

    authors: Wang PF,Marcinkeviciene J,Williams CH Jr,Blanchard JS

    更新日期:1998-11-17 00:00:00