Assignment and charge translocation stoichiometries of the major electrogenic phases in the reaction of cytochrome c oxidase with dioxygen.

Abstract:

:The reaction of cytochrome c oxidase with dioxygen has been studied by means of time-resolved measurements of electrical membrane potential (DeltaPsi). Microsecond time resolution was achieved by starting with the CO-inhibited enzyme, which was photolyzed after addition of oxygen. The time course of the reaction could be fitted by using a five-step sequential reaction as a model. The first two phases of the reaction, which correspond in time to binding of oxygen followed by formation of the P (peroxy) intermediate, as observed spectroscopically, are not associated with net charge displacement across the membrane. After this lag, DeltaPsi develops in three phases, which correspond in time to the conversion of P to the F (ferryl) intermediate, in a single phase, and conversion of F to O (the fully oxidized enzyme), in two phases. The amplitude of DeltaPsi was approximately equal for the P --> F and F --> O portions of the reaction. When the oxygen reaction is started with incompletely reduced enzyme, it will halt at the P or F state. When the reaction was allowed to proceed to the F state, but no further, only the fast phase of DeltaPsi formation was observed, whereas no DeltaPsi was generated if the reaction was halted at P. This finding places the assignments of phases in the electrometric data on a firmer basis-they are no longer based solely on temporal correspondence with phases in the spectroscopic data. To define the number of charges transferred across the membrane during the reaction, some kind of calibration is needed. For this purpose, another type of reaction-electron transfer following CO photolysis in the absence of oxygen ("backflow")-was studied. Parallel spectroscopic and electrometric measurements showed that the fast electron transfer from the low-spin heme to CuA in the backflow process results in approximately 11 times smaller amplitude of DeltaPsi as compared with DeltaPsi generated in the reaction of the reduced enzyme with oxygen (the polarity is also reversed). If it is assumed that transfer of an electron from the low-spin heme to CuA amounts to movement of a unit charge across half of the membrane dielectric, charge translocation in the reaction of the reduced enzyme with oxygen amounts to approximately 5.5 unit charges-the value predicted if all four protons pumped during the catalytic cycle are translocated during the oxidative part of the reaction.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Jasaitis A,Verkhovsky MI,Morgan JE,Verkhovskaya ML,Wikström M

doi

10.1021/bi982275l

subject

Has Abstract

pub_date

1999-03-02 00:00:00

pages

2697-706

issue

9

eissn

0006-2960

issn

1520-4995

pii

bi982275l

journal_volume

38

pub_type

杂志文章
  • Rational attempts to optimize non-natural nucleotides for selective incorporation opposite an abasic site.

    abstract::Translesion DNA synthesis represents the ability of a DNA polymerase to misinsert a nucleotide opposite a DNA lesion. Previous kinetic studies of the bacteriophage T4 DNA polymerase using a series of non-natural nucleotides suggest that pi-electron density of the incoming nucleotide substantially contributes to the ef...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060418v

    authors: Zhang X,Donnelly A,Lee I,Berdis AJ

    更新日期:2006-11-07 00:00:00

  • The hydrophobic adsorption of charged molecules to bilayer membranes: a test of the applicability of the stern equation.

    abstract::To describe the hydrophobic adsorption of charged molecules to bilayer membranes, one must recognize that the adsorption produces a change in the electrostatic potential at the surface of the membrane. The surface potential produced by the adsorption of the charged molecules can be described most simply by the Gouy eq...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00654a023

    authors: McLaughlin S,Harary H

    更新日期:1976-05-04 00:00:00

  • Targeted cross-linking of a molten globule form of acetylcholinesterase by the virucidal agent hypericin.

    abstract::The natural product hypericin is a photosensitive polycyclic aromatic dione compound, which has been widely investigated because of its virucidal and antitumor properties. Although it has been suggested that singlet oxygen or a radical species might be responsible for its biological action, its mechanism of action rem...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991147+

    authors: Weiner L,Roth E,Mazur Y,Silman I

    更新日期:1999-08-31 00:00:00

  • Through the Lipopolysaccharide Glass: A Potent Antimicrobial Peptide Induces Phase Changes in Membranes.

    abstract::In the following, molecular simulations are used to reveal unexpected behavior within bacterial membranes. We show that lipopolysaccharide molecules found in these membranes form viscous amorphous solids when they are interlinked with monovalent and divalent cations. The bilayers exhibit both liquid and glassy charact...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b01063

    authors: Jefferies D,Hsu PC,Khalid S

    更新日期:2017-03-21 00:00:00

  • Effect of ADP on binding of skeletal S1 to F-actin.

    abstract::The proximity of skeletal myosin subfragment-1 (S1) to actin, and its orientation with respect to thin filaments of single muscle fibers, were compared in the presence and in the absence of ADP. The proximity was assessed by the efficiency of carbodiimide-induced cross-linking and the orientation by polarization of fl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981664c

    authors: Andreev OA,Ushakov DS,Borejdo J

    更新日期:1998-12-22 00:00:00

  • Progesterone-binding components of chick oviduct: analysis of receptor structure by limited proteolysis.

    abstract::An endogenous calcium-activated sulfhydryl protease in chick oviduct cytosol has been utilized to study the structure of the chick oviduct progesterone receptor subunits, progestophilins A (79 000 g/mol) and B (117 000 g/mol). The protease is not a normal component of the native progesterone receptor aggregate (6 and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00543a015

    authors: Vedeckis WV,Schrader WT,O'Malley BW

    更新日期:1980-01-22 00:00:00

  • Femtosecond time-resolved absorption spectroscopy of main-form and high-salt peridinin-chlorophyll a-proteins at low temperatures.

    abstract::Steady-state and femtosecond time-resolved optical methods have been used to compare the spectroscopic features and energy transfer dynamics of two systematically different light-harvesting complexes from the dinoflagellate Amphidinium carterae: main-form (MFPCP) and high-salt (HSPCP) peridinin-chlorophyll a-proteins....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061217u

    authors: Ilagan RP,Koscielecki JF,Hiller RG,Sharples FP,Gibson GN,Birge RR,Frank HA

    更新日期:2006-11-28 00:00:00

  • NMR solution structure of the C-terminal fragment 255-316 of thermolysin: a dimer formed by subunits having the native structure.

    abstract::The solution structure of the C-terminal fragment 255-316 of thermolysin has been determined by two-dimensional proton NMR methods. For this disulfide-free fragment there was a previous proposal according to which it would fold into a stable helical structure forming a dimer at concentrations above 0.06 mM. A complete...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00253a023

    authors: Rico M,Jiménez MA,González C,De Filippis V,Fontana A

    更新日期:1994-12-13 00:00:00

  • Three-state denaturation of DnaK induced by guanidine hydrochloride. Evidence for an expandable intermediate.

    abstract::The denaturation of the heat shock protein DnaK induced by guanidine hydrochloride (Gdn-HCl) was investigated by circular dichroism, fluorescence, size-exclusion HPLC, and dynamic light scattering. DnaK unfolding takes place in two discrete steps. The midpoint (Cm) of the first transition (0.5 M) was shifted to higher...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00067a021

    authors: Palleros DR,Shi L,Reid KL,Fink AL

    更新日期:1993-04-27 00:00:00

  • Contributions of the polar, uncharged amino acids to the stability of staphylococcal nuclease: evidence for mutational effects on the free energy of the denatured state.

    abstract::In order to quantitate the contributions of the polar, uncharged amino acids to the stability of the native state of staphylococcal nuclease, each of the 13 alanines, 9 glycines, 9 threonines, 6 prolines, 6 glutamines, 6 asparagines, and 3 serines was substituted, either with both alanine and glycine or with 1 of thes...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00140a005

    authors: Green SM,Meeker AK,Shortle D

    更新日期:1992-06-30 00:00:00

  • Domain organization and functional analysis of type IIS restriction endonuclease Eco31I.

    abstract::Type IIS restriction endonuclease Eco31I harbors a single HNH active site and cleaves both DNA strands close to its recognition sequence, 5'-GGTCTC(1/5). A two-domain organization of Eco31I was determined by limited proteolysis. Analysis of proteolytic fragments revealed that the N-terminal domain of Eco31I is respons...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi800660u

    authors: Jakubauskas A,Sasnauskas G,Giedriene J,Janulaitis A

    更新日期:2008-08-19 00:00:00

  • Interaction of the fluorescence-labeled secretory component with human polymeric immunoglobulins.

    abstract::The secretory component (SC) isolated from human milk was labeled with 2 mol of the fluorescent thiol reagent N-[7-(dimethylamino)-4-methylcoumarinyl]maleimide (DACM) per mol of SC through the reactive disulfide bond of SC. The binding of the labeled SC to polymeric immunoglobulins was examined by gel filtration by me...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00321a070

    authors: Goto Y,Aki K

    更新日期:1984-12-18 00:00:00

  • Nematode Sgt1-homologue D1054.3 binds open and closed conformations of Hsp90 via distinct binding sites.

    abstract::Heat shock protein 90 (Hsp90) is a highly conserved ATP-driven machine involved in client protein maturation, folding, and activation. The chaperone is supported by a set of cochaperones that confer client specificities. One of those proteins is the suppressor of G2 allele of skp1 (Sgt1), which participates together w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi5000542

    authors: Eckl JM,Drazic A,Rutz DA,Richter K

    更新日期:2014-04-22 00:00:00

  • Structural and thermodynamic characterization of the Escherichia coli RelBE toxin-antitoxin system: indication for a functional role of differential stability.

    abstract::The RelE and RelB proteins constitute the RNA interferase (toxin) and its cognate inhibitor (antitoxin) components of the Escherichia coli relBE toxin-antitoxin system. Despite the well-described functionality and physiological activity of this system in E. coli, no structural study was performed on the folding and st...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701037e

    authors: Cherny I,Overgaard M,Borch J,Bram Y,Gerdes K,Gazit E

    更新日期:2007-10-30 00:00:00

  • Structural analysis of N-linked oligosaccharides of equine chorionic gonadotropin and lutropin beta-subunits.

    abstract::Equine chorionic gonadotropin (eCG) and lutropin (eLH) are composed of alpha- and beta-subunits with an identical amino acid sequence but show different biological activities. To elucidate the molecular difference between these gonadotropins, the structure of the N-linked oligosaccharides of each beta-subunit was dete...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00251a012

    authors: Matsui T,Mizuochi T,Titani K,Okinaga T,Hoshi M,Bousfield GR,Sugino H,Ward DN

    更新日期:1994-11-29 00:00:00

  • An internal cysteine plays a role in the maintenance of the latency of human fibroblast collagenase.

    abstract::The cDNA that encodes the proenzyme form of human fibroblast collagenase has been expressed in Escherichia coli. It has been shown by a number of criteria to be functionally identical with the enzyme isolated from human sources. Mutations of each of three cysteine residues found in procollagenase were constructed by s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00217a008

    authors: Windsor LJ,Birkedal-Hansen H,Birkedal-Hansen B,Engler JA

    更新日期:1991-01-22 00:00:00

  • Association of protein C23 with rapidly labeled nucleolar RNA.

    abstract::The association of nucleolar phosphoprotein C23 with preribosomal ribonucleoprotein (RNP) particles was examined in Novikoff hepatoma nucleoli. RNA was labeled with [3H]uridine for various times in cell suspensions, and RNP particles were extracted from isolated nucleoli and fractionated by sucrose gradient ultracentr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00368a063

    authors: Herrera AH,Olson MO

    更新日期:1986-10-07 00:00:00

  • Adenosine 5'-triphosphate analogues as structural probes for Escherichia coli glutamine synthetase.

    abstract::Introduction of specific structural probes into substrate binding sites of Escherichia coli glutamine synthetase is now possible. Various analogues of ATP substituted with an amino or sulfhydryl moiety at the 6- or 8-position of the purine ring have been found to substitute for ATP in the autoinactivation reaction of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00349a020

    authors: Maurizi MR,Ginsburg A

    更新日期:1986-01-14 00:00:00

  • Formation of radiation-induced cross-links between thymine and tyrosine: possible model for cross-linking of DNA and proteins by ionizing radiation.

    abstract::A model for radiation-induced cross-linking of DNA and proteins has been developed. It is based on initial formation of free radicals on a DNA base, i.e., thymine, and on an amino acid, i.e., tyrosine. It was demonstrated that interaction of these radicals is highly favored as measured by their kinetics and the cross-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00322a034

    authors: Simic MG,Dizdaroglu M

    更新日期:1985-01-01 00:00:00

  • Crystal structures of potent thiol-based inhibitors bound to carboxypeptidase B.

    abstract::This paper presents the crystal structure of porcine pancreatic carboxypeptidase B (pp-CpB) in complex with a variety of thiol-based inhibitors that were developed as antagonists of activated thrombin-activatable fibrinolysis inhibitor (TAFIa). Recent studies have indicated that a selective inhibitor of TAFIa could en...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0501941

    authors: Adler M,Bryant J,Buckman B,Islam I,Larsen B,Finster S,Kent L,May K,Mohan R,Yuan S,Whitlow M

    更新日期:2005-07-05 00:00:00

  • Mechanistic Studies of the Streptomyces bingchenggensis Aldolase-Dehydratase: Implications for Substrate and Reaction Specificity in the Acetoacetate Decarboxylase-like Superfamily.

    abstract::The acetoacetate decarboxylase-like superfamily (ADCSF) is a little-explored group of enzymes that may contain new biocatalysts. The low level of sequence identity (∼20%) between many ADCSF enzymes and the confirmed acetoacetate decarboxylases led us to investigate the degree of diversity in the reaction and substrate...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00652

    authors: Mydy LS,Hoppe RW,Hagemann TM,Schwabacher AW,Silvaggi NR

    更新日期:2019-10-08 00:00:00

  • Role of zinc ions in activation and inactivation of thrombin-activatable fibrinolysis inhibitor.

    abstract::Thrombin-activatable fibrinolysis inhibitor (TAFI) circulates as an inactive proenzyme of a carboxypeptidase B-like enzyme (TAFIa). It functions by removing C-terminal lysine residues from partially degraded fibrin that are important in tissue-type plasminogen activator mediated plasmin formation. TAFI was classified ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0115683

    authors: Marx PF,Bouma BN,Meijers JC

    更新日期:2002-01-29 00:00:00

  • Predominant interactions between mu-conotoxin Arg-13 and the skeletal muscle Na+ channel localized by mutant cycle analysis.

    abstract::High-affinity mu-conotoxin block of skeletal muscle Na+ channels depends on an arginine at position 13 (Arg-13). To understand both the mechanism of toxin interaction and the general structure of its binding site in the channel mouth, we examined by thermodynamic mutant cycle analysis the interaction between the criti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9724927

    authors: Chang NS,French RJ,Lipkind GM,Fozzard HA,Dudley S Jr

    更新日期:1998-03-31 00:00:00

  • Threonine 41 in beta-catenin serves as a key phosphorylation relay residue in beta-catenin degradation.

    abstract::Beta-catenin phosphorylation at serine 45 (Ser45), threonine 41 (Thr41), Ser37, and Ser33 is critical for beta-catenin degradation, and regulation of beta-catenin phosphorylation is a central part of the canonical Wnt signaling pathway. Beta-catenin mutations at Ser45, Thr41, Ser37, and Ser33 perturb beta-catenin degr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0601149

    authors: Wu G,He X

    更新日期:2006-04-25 00:00:00

  • High-pressure denaturation of staphylococcal nuclease proline-to-glycine substitution mutants.

    abstract::Our recently reported pressure-jump relaxation kinetics experiments on staphylococcal nuclease folding and unfolding [Vidugiris et al. (1995) Biochemistry 34, 4909] demonstrated that both transitions exhibit positive activation volumes, with that of folding being much larger than that of unfolding. Thus high pressure ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952012g

    authors: Vidugiris GJ,Truckses DM,Markley JL,Royer CA

    更新日期:1996-03-26 00:00:00

  • DNA-dependent ATPase from HeLa cells is related to human Ku autoantigen.

    abstract::A 150-kDa DNA-dependent ATPase composed of 83/68-kDa subunits was previously reported to cofractionate with a 21S complex of enzymes for DNA synthesis from HeLa cells (Vishwanatha, J. K., & Baril, E. F. (1990) Biochemistry 29, 8753-8759). The DNA-dependent ATPase was purified to electrophoretic homogeneity from a HeLa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00194a021

    authors: Cao QP,Pitt S,Leszyk J,Baril EF

    更新日期:1994-07-19 00:00:00

  • Posttranslational modifications of the Ia-associated invariant protein p41 after gene transfer.

    abstract::Biochemical analysis of a rat fibroblast cell clone, transfected with the murine Ia associated invariant chain gene, demonstrates the expression of a family of proteins. This indicates that all members of the invariant protein family are derived from the same gene. The proteins p41, Ii, p27, p25, and p10, synthesized ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00411a028

    authors: Koch N

    更新日期:1988-05-31 00:00:00

  • Structure-function relationship of a recombinant human galactoside-binding protein.

    abstract::A galactoside-binding lectin (hL-31) containing a collagen-like sequence was identified in human tumor cells. It was found to be the homologue of the IgE-binding protein, the macrophage cell-surface Mac-2 antigen, and the murine CBP35, RL-29, and mL-34 lectins. Here we report on the expression in Escherichia coli and ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00067a038

    authors: Ochieng J,Platt D,Tait L,Hogan V,Raz T,Carmi P,Raz A

    更新日期:1993-04-27 00:00:00

  • G-1:C73 recognition by an arginine cluster in the active site of Escherichia coli histidyl-tRNA synthetase.

    abstract::Aminoacylation of a transfer RNA (tRNA) by its cognate aminoacyl-tRNA synthetase relies upon the recognition of specific nucleotides as well as conformational features within the tRNA by the synthetase. In Escherichia coli, the aminoacylation of tRNA(His) by histidyl-tRNA synthetase (HisRS) is highly dependent upon th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035708f

    authors: Connolly SA,Rosen AE,Musier-Forsyth K,Francklyn CS

    更新日期:2004-02-03 00:00:00

  • Control of P-glycoprotein activity by membrane cholesterol amounts and their relation to multidrug resistance in human CEM leukemia cells.

    abstract::P-glycoprotein (P-gp) is the most well-known ATP-binding cassette (ABC) transporter involved in unidirectional substrate translocation across the membrane lipid bilayer, thereby causing the typical multidrug resistance (MDR) phenotype expressed in many cancers. We observed that in human CEM acute lymphoblastic leukemi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048669w

    authors: Gayet L,Dayan G,Barakat S,Labialle S,Michaud M,Cogne S,Mazane A,Coleman AW,Rigal D,Baggetto LG

    更新日期:2005-03-22 00:00:00