Abstract:
:A model for radiation-induced cross-linking of DNA and proteins has been developed. It is based on initial formation of free radicals on a DNA base, i.e., thymine, and on an amino acid, i.e., tyrosine. It was demonstrated that interaction of these radicals is highly favored as measured by their kinetics and the cross-linked products. The gas chromatography-mass spectrometry methodology used for the identification of the thymine-tyrosine cross-links is suggested as an experimental approach in the measurements of biological cross-links.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Simic MG,Dizdaroglu Mdoi
10.1021/bi00322a034subject
Has Abstractpub_date
1985-01-01 00:00:00pages
233-6issue
1eissn
0006-2960issn
1520-4995journal_volume
24pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::The experiments described here explore the role of local sequence in the folding of cellular retinoic acid binding protein I (CRABP I). This is a 136-residue, 10-stranded, antiparallel beta-barrel protein with seven beta-hairpins and is a member of the intracellular lipid binding protein (iLBP) family. The relative ro...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi034304k
更新日期:2003-07-08 00:00:00
abstract::We studied the basic steps of proton transfer through ATP synthase of chloroplasts, CF0CF1, under conditions of proton slip, a conducting stage in the absence of added nucleotides. On the background of a steady transmembrane pH difference, voltage steps were induced by flashing light. Proton intake, transfer, and rele...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00027a008
更新日期:1995-07-11 00:00:00
abstract::Common structural motifs, such as the cupin domains, are found in enzymes performing different biochemical functions while retaining a similar active site configuration and structural scaffold. The soil bacterium Bacillus subtilis has 20 cupin genes (0.5% of the total genome) with up to 14% of its genes in the form of...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0484421
更新日期:2005-01-11 00:00:00
abstract::Plants employ a variety of light, oxygen, voltage (LOV) domain photoreceptors to regulate diverse aspects of growth and development. The Zeitlupe (ZTL), Flavin-Kelch-Fbox-1 (FKF1), and LOV-Kelch-Protein-2 (LKP2) proteins dictate measurement of the day length, flowering time, and regulation of the circadian clock by bl...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi401027n
更新日期:2013-10-08 00:00:00
abstract::Spectroscopic and kinetic methods have been used to explore the roles of divalent metal ions in the enolase-catalyzed dehydration of 2-phosphoglycerate (2-PGA). Enolase requires 2 equiv of metal ion per active site for maximal activity. Previous crystallographic studies [Larsen, T. M., Wedekind, J. E., Rayment, I., an...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0103922
更新日期:2001-07-10 00:00:00
abstract::Piscidin 1 (Pis-1) is a novel cytotoxic peptide with a cationic alpha-helical structure that was isolated from the mast cells of hybrid striped bass [Silphaduang, U., and Noga, E. J. (2001) Nature 414, 268-269]. Pis-1 is not selective for bacterial versus mammalian cells. In the present study, to develop novel antibio...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi062233u
更新日期:2007-03-27 00:00:00
abstract::A 600 MHz 1H NMR study of toxin OSK1, blocker of small-conductance Ca2+-activated K+ channels, is presented. The unambiguous sequential assignment of all the protons of the toxin was obtained using TOCSY, DQF-COSY, and NOESY experiments at pH 3.0 (10, 30, and 45 degrees C) in aqueous solution. 3J(N alpha), 3J(alphabet...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9614390
更新日期:1997-02-11 00:00:00
abstract::Since a major function of RNA polymerase must be to bring together substrates in the optimal configuration for internucleotide bond formation, studies have been undertaken to understand the geometrical relationship of the two substrates. A model has been constructed for the geometry of interaction of two ATP molecules...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00477a017
更新日期:1990-06-26 00:00:00
abstract::The three lipoyl (E2plip) domains of the dihydrolipoyl acetyltransferase component of the pyruvate dehydrogenase (PDH) complex of Escherichia coli house the lipoyl-lysine side chain essential for active-site coupling and substrate channelling within the complex. The structure of the unlipoylated form of the innermost ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi992978i
更新日期:2000-07-25 00:00:00
abstract::Glycophorin A is a sialoglycoprotein isolated from human erythrocyte membranes which seems to exist as stable dimeric complexes in the presence of sodium dodecyl sulfate. When analyzed by dodecyl sulfate acrylamide electrophoresis this molecule forms two PAS-stainable bands (PAS-U and PAS-2) which are reversibly inter...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00650a028
更新日期:1976-03-09 00:00:00
abstract::A 39/34-kilodalton (kDa) monomeric dispase fragment of von Willebrand factor (vWF) has been purified by heparin affinity chromatography. Detailed structural analysis of the individual 39- and 34-kDa fragments indicated that they had identical amino acid sequences extending from Leu-480/Val-481 to Gly-718 with an intra...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00447a010
更新日期:1989-10-17 00:00:00
abstract::Heat shock protein 90 (Hsp90) is a highly conserved ATP-driven machine involved in client protein maturation, folding, and activation. The chaperone is supported by a set of cochaperones that confer client specificities. One of those proteins is the suppressor of G2 allele of skp1 (Sgt1), which participates together w...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi5000542
更新日期:2014-04-22 00:00:00
abstract::In the HLH-LZ protein family, the helix-loop-helix DNA-binding dimerization domain is followed in the sequence by a leucine zipper motif. The precise function of this second dimerization domain is still unclear, since the HLH motif of a subset of this family has been shown to be necessary and sufficient for dimerizati...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00203a027
更新日期:1994-09-20 00:00:00
abstract::Heme A, an obligatory cofactor in eukaryotic cytochrome c oxidase, is produced from heme B (protoheme) via two enzymatic reactions catalyzed by heme O synthase and heme A synthase. Heme O synthase is responsible for the addition of a farnesyl moiety, while heme A synthase catalyzes the oxidation of a methyl substituen...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0203536
更新日期:2002-09-10 00:00:00
abstract::We have used resonance energy transfer to read out the interactions of the alpha subunit of transducin (alpha T) with the transducin beta gamma subunit complex (beta gamma T) and to compare the rate of aluminum fluoride-induced alpha T activation, as reflected by the enhancement of the alpha T tryptophan fluorescence,...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00199a046
更新日期:1994-08-23 00:00:00
abstract::Aminoacyl-tRNA synthetases preserve the fidelity of decoding genetic information by accurately joining amino acids to their cognate transfer RNAs. Here, tRNA discrimination at the level of binding by Escherichia coli histidyl-tRNA synthetase is addressed by filter binding, analytical ultracentrifugation, and iodine fo...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi991182g
更新日期:1999-10-12 00:00:00
abstract::The systems of tRNA glycylation belong to the most complex aminoacylation systems since neither the oligomeric structure of glycyl-tRNA synthetases (GlyRS) nor the discriminator bases in tRNAGly are conserved in the phylae. To better understand the structure-function relationship in glycylation systems of various orig...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi991392t
更新日期:1999-10-05 00:00:00
abstract::We have visualized by freeze-etch electron microscopy the macromolecular complexes of complement, C5b-8 and C5b-9, respectively, assembled on synthetic phospholipid bilayers. These complexes were formed sequentially by using purified human complement components C5b-6 followed by C7, C8, and C9. Complexes of C5b-8 were...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00428a019
更新日期:1989-01-24 00:00:00
abstract::Ribulose-1,5-bisphosphate (RuBP) carboxylase/oxygenase (Rubisco) is a globally significant biocatalyst that facilitates the removal and sequestration of CO2 from the biosphere. Rubisco-catalyzed CO2 reduction thus provides virtually all of the organic carbon utilized by living organisms. Despite catalyzing the rate-li...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9006385
更新日期:2009-09-29 00:00:00
abstract::We have described earlier a chromatin-bound protease with unique specificity for histone H2A [Eickbush, T. H., Watson, D. K., & Moudrianakis, E. N. (1976) Cell (Cambridge, Mass.) 9, 785--792]. In the present study, we explore the nature of interactions that form and stabilize the enzyme-chromatin system by using the a...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00531a008
更新日期:1982-01-19 00:00:00
abstract::Class II MHC glycoproteins bind short (7-25 amino acid) peptides in an extended type II polyproline-like conformation and present them for immune recognition. Because empty MHC is unstable, measurement of the rate of the second-order reaction between peptide and MHC is challenging. In this report, we use dissociation ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9921337
更新日期:2000-02-08 00:00:00
abstract::Phosphorylation of phosphatidylinositol (PtdIns) by PtdIns 4-kinases is the first step in the synthesis of polyphosphoinositides, the lipid precursors of intracellular signaling molecules. We have recently identified a cytosolic PtdIns 4-kinase (cPI4K) in the bovine adrenal cortex that is distinguished from previously...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9517493
更新日期:1996-03-19 00:00:00
abstract::Six structural repeat motifs of 58 amino acids are found in the sequence of both mouse and human properdins. Twelve more examples of the motif are available from the sequences of thrombospondin, the terminal complement components, and the thrombospondin-related anonymous protein. The averaged Robson and Chou-Fasman se...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00444a007
更新日期:1989-09-05 00:00:00
abstract::A particle obtained by nuclease digestion of nucleohistone complexes prepared by direct mixing of histones with DNA in 0.15 M NaCl was indistinguishable by composition and physical properties from nucleosome cores prepared under the same conditions from nucleohistone preannealed in 0.6 M NaCl. We show here that differ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00476a025
更新日期:1990-06-19 00:00:00
abstract::We report the use of electrospray ionization (ESI) mass spectrometry (MS) in conjunction with online rapid mixing to monitor the kinetics of acid-induced ferrihemoglobin denaturation. Under equilibrium conditions, the hemoglobin mass spectrum is dominated by the intact heterotetramer. Dimeric and monomeric species are...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi048501a
更新日期:2004-11-23 00:00:00
abstract::The Ca2+-ATPase of sarcoplasmic reticulum was purified and depleted of proteolipids by solubilization in Triton X-100 and by fractionation on a DE-52 column. The protein reconstituted by deoxycholate-cholate dialysis at low lipid to protein ratios (2-5 mg of lipid/mg of protein), with either dioleoylphosphatidylethano...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00296a021
更新日期:1984-01-03 00:00:00
abstract::Conventional isoforms of protein kinase C (PKC) are activated when their two membrane-targeting modules, the C1 and C2 domains, bind the second messengers diacylglycerol (DG) and Ca2+, respectively. This study investigates the mechanism of Ca2+-induced binding of PKC betaII to anionic membranes mediated by the C2 doma...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi010761u
更新日期:2001-11-06 00:00:00
abstract::To determine the active site cysteine residue in aldehyde dehydrogenase, we mutated amino acid residues 49, 162, and 302 of recombinantly expressed rat liver mitochondrial (class 2) aldehyde dehydrogenase. The C49A and C162A mutants were fully active tetrameric enzymes, although the C162A mutant was found to be highly...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00008a025
更新日期:1995-02-28 00:00:00
abstract::Curcumin potentiates the phosphorylation-dependent activity of human cystic fibrosis transmembrane conductance regulator (CFTR) in Fe(3+)-dependent and Fe(3+)-independent manners. Although the Fe(3+)-dependent curcumin potentiation results from removal of endogenous inhibitory Fe(3+) at the interface of the regulatory...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.5b00219
更新日期:2015-05-12 00:00:00
abstract::Annexin V (AxV) is a member of a family of proteins that exhibit functionally relevant Ca2+-dependent binding to anionic phospholipid membranes. Protein structure and stability as a function of Ca2+ and phospholipids was studied by bulk phase infrared (IR) spectroscopy and by IR reflection-absorption spectroscopy (IRR...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9819677
更新日期:1999-01-12 00:00:00