DNA-dependent ATPase from HeLa cells is related to human Ku autoantigen.

Abstract:

:A 150-kDa DNA-dependent ATPase composed of 83/68-kDa subunits was previously reported to cofractionate with a 21S complex of enzymes for DNA synthesis from HeLa cells (Vishwanatha, J. K., & Baril, E. F. (1990) Biochemistry 29, 8753-8759). The DNA-dependent ATPase was purified to electrophoretic homogeneity from a HeLa cell homogenate by a modified procedure that involves subcellular fractionation, poly(ethylene-glycol) precipitation of the combined nuclear extract/cytosol, and chromatography on Q-Sepharose and native and denatured DNA/celluloses followed by Mono-S fast protein liquid chromatography. The purified enzyme showed equimolar amounts of 83- and 68-kDa polypeptides following polyacrylamide gel electrophoresis under denaturing conditions. Sequence analysis of peptide fragments derived from the separated 83- and 68-kDa polypeptides showed 90-100% homology with the corresponding 80- and 70-kDa subunits of human Ku protein. Immunoblot analysis of the ATPase during the course of its purification and immunoprecipitation with antibodies to the 80- and 70-kDa subunits of human Ku protein confirmed the relationship of the 83- and 68-kDa polypeptides of the human DNA-dependent ATPase to the subunits of human Ku protein. Both the 83- and 68-kDa polypeptides are phosphorylated by a DNA-dependent protein kinase that cofractionates with the ATPase. The DNA-dependent ATPase activity is up regulated by phosphorylation.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Cao QP,Pitt S,Leszyk J,Baril EF

doi

10.1021/bi00194a021

subject

Has Abstract

pub_date

1994-07-19 00:00:00

pages

8548-57

issue

28

eissn

0006-2960

issn

1520-4995

journal_volume

33

pub_type

杂志文章
  • A reconstituted light-harvesting complex from the green sulfur bacterium Chlorobium tepidum containing CsmA and bacteriochlorophyll a.

    abstract::Green sulfur bacteria possess two light-harvesting antenna systems, the chlorosome and the Fenna-Matthews-Olson (FMO) protein. In addition to self-aggregated bacteriochlorophyll (BChl) c, chlorosomes of Chlorobium tepidum contain a small amount of BChl a (ratio 100:1). The chlorosomal BChl a is associated with CsmA, a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701616r

    authors: Pedersen MØ,Pham L,Steensgaard DB,Miller M

    更新日期:2008-02-05 00:00:00

  • Binding to cisplatin-modified DNA by the Saccharomyces cerevisiae HMGB protein Nhp6A.

    abstract::Nhp6A is an abundant non-histone chromatin-associated protein in Saccharomyces cerevisiae that contains a minor groove DNA binding motif called the HMG box. In this report, we show that Nhp6Ap binds to cisplatin intrastrand cross-links on duplex DNA with a 40-fold greater affinity than to unmodified DNA with the same ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi012077l

    authors: Wong B,Masse JE,Yen YM,Giannikopoulos P,Feigon J,Johnson RC

    更新日期:2002-04-30 00:00:00

  • Uniform 13C isotope labeling of proteins with sodium acetate for NMR studies: application to human carbonic anhydrase II.

    abstract::Uniform double labeling of proteins for NMR studies can be prohibitively expensive, even with an efficient expression and purification scheme, due largely to the high cost of [13C6, 99%]glucose. We demonstrate here that uniformly (greater than 95%) 13C and 15N double-labeled proteins can be prepared for NMR structure/...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00232a017

    authors: Venters RA,Calderone TL,Spicer LD,Fierke CA

    更新日期:1991-05-07 00:00:00

  • Unique binding of a novel synthetic inhibitor, N-[3-[4-[4-(amidinophenoxy)carbonyl]phenyl]-2-methyl-2-propenoyl]- N-allylglycine methanesulfonate, to bovine trypsin, revealed by the crystal structure of the complex.

    abstract::Trypsin and N-[3-[4-[4-(amidinophenoxy)carbonyl]phenyl]-2-methyl-2-propenoyl]- N-allylglycine methanesulfonate (1), a newly designed and orally active synthetic trypsin inhibitor, were cocrystallized. The space group of the crystal is P2(1)2(1)2(1) with cell constants a = 63.74 A, b = 63.08 A, and c = 69.38 A, which i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00039a046

    authors: Odagaki Y,Nakai H,Senokuchi K,Kawamura M,Hamanaka N,Nakamura M,Tomoo K,Ishida T

    更新日期:1995-10-03 00:00:00

  • Biochemical and structural characterization of Pseudomonas aeruginosa Bfd and FPR: ferredoxin NADP+ reductase and not ferredoxin is the redox partner of heme oxygenase under iron-starvation conditions.

    abstract::Among the 118 genes upregulated by Pseudomonas aeruginosa in response to iron starvation [Ochsner, U. A., Wilderman, P. J., Vasil, A. I., and Vasil, M. L. (2002) Mol. Microbiol. 45, 1277-1287], we focused on the products of the two genes encoding electron transfer proteins, as a means of identifying the redox partners...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7013135

    authors: Wang A,Zeng Y,Han H,Weeratunga S,Morgan BN,Moënne-Loccoz P,Schönbrunn E,Rivera M

    更新日期:2007-10-30 00:00:00

  • Ceruloplasmin copper induces oxidant damage by a redox process utilizing cell-derived superoxide as reductant.

    abstract::Oxidative damage by transition metals bound to proteins may be an important pathogenic mechanism. Ceruloplasmin (Cp) is a Cu-containing plasma protein thought to be involved in oxidative modification of lipoproteins. We have previously shown that Cp increased cell-mediated low-density lipoprotein (LDL) oxidation by a ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981137t

    authors: Mukhopadhyay CK,Fox PL

    更新日期:1998-10-06 00:00:00

  • Binding of ATP by pertussis toxin and isolated toxin subunits.

    abstract::The binding of ATP to pertussis toxin and its components, the A subunit and B oligomer, was investigated. Whereas, radiolabeled ATP bound to the B oligomer and pertussis toxin, no binding to the A subunit was observed. The binding of [3H]ATP to pertussis toxin and the B oligomer was inhibited by nucleotides. The relat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00478a003

    authors: Hausman SZ,Manclark CR,Burns DL

    更新日期:1990-07-03 00:00:00

  • Unbinding of oxidized cytochrome c from photosynthetic reaction center of Rhodobacter sphaeroides is the bottleneck of fast turnover.

    abstract::To understand the details of rate limitation of turnover of the photosynthetic reaction center, photooxidation of horse heart cytochrome c by reaction center from Rhodobacter spheroides in detergent dispersion has been examined by intense continuous illumination under a wide variety of conditions of cytochrome concent...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991563u

    authors: Gerencsér L,Laczkó G,Maróti P

    更新日期:1999-12-21 00:00:00

  • Structure of the crystalline bilayer in the subgel phase of dipalmitoylphosphatidylglycerol.

    abstract::The structure of the subgel phase of dipalmitoylphosphatidylglycerol (DPPG) has been analyzed by X-ray diffraction techniques. Diffraction recorded from highly oriented DPPG specimens in the subgel phase extends to 2-A resolution. There are sharp lamellar reflections on the meridian, and other reflections lie on a ser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00350a003

    authors: Blaurock AE,McIntosh TJ

    更新日期:1986-01-28 00:00:00

  • DNA cross-linking and sequence selectivity of aziridinylbenzoquinones: a unique reaction at 5'-GC-3' sequences with 2,5-diaziridinyl-1,4-benzoquinone upon reduction.

    abstract::Several bifunctional alkylating agents of the aziridinylbenzoquinone class have been evaluated as potential antitumor agents. 3,6-Bis[(2-hydroxyethyl)amino]-2,5- diaziridinyl-1,4-benzoquinone (BZQ), 2,5-diaziridinyl-1,4-benzoquinone (DZQ), 3,6-bis(carboxyamino)-2,5-diaziridinyl- 1,4-benzoquinone (AZQ), and six analogu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00114a016

    authors: Hartley JA,Berardini M,Ponti M,Gibson NW,Thompson AS,Thurston DE,Hoey BM,Butler J

    更新日期:1991-12-17 00:00:00

  • Identification of two serine residues essential for agonist-induced 5-HT2A receptor desensitization.

    abstract::5-HT(2A) serotonin receptors represent the principal molecular targets for LSD-like hallucinogens and atypical antipsychotic drugs. It has been proposed that a dysregulation of 5-HT(2A) receptor-mediated signaling may contribute to the pathogenesis of schizophrenia and related diseases. A major mechanism for the atten...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035061z

    authors: Gray JA,Compton-Toth BA,Roth BL

    更新日期:2003-09-16 00:00:00

  • Acidic residues are involved in substrate recognition by two soluble protein tyrosine phosphatases, PTP-5 and rrbPTP-1.

    abstract::The mechanisms for substrate recognition by two cytoplasmic protein tyrosine phosphatases, PTP-5 and rrbPTP-1, were investigated. Phosphorylation sites on tyrosine-phosphorylated casein, a model PTP substrate, were characterized. Two peptides based on casein phosphorylation sites and one peptide based on the tyrosine ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00097a019

    authors: Hippen KL,Jakes S,Richards J,Jena BP,Beck BL,Tabatabai LB,Ingebritsen TS

    更新日期:1993-11-23 00:00:00

  • Parameters affecting the elongation block by RNA polymerase II at the SV40 attenuator 1 in vitro.

    abstract::We have previously suggested that folding of the SV40 attenuator RNA 1 into two hairpin elements leads to a block of transcription elongation. Using site-directed mutagenesis, we created three templates that either strengthened or weakened the proposed hairpin structures. The mutated and wild-type templates were clone...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00150a034

    authors: Goldring NB,Kessler M,Aloni Y

    更新日期:1992-09-08 00:00:00

  • Exploring the binding site of delta(lac)-acetogenin in bovine heart mitochondrial NADH-ubiquinone oxidoreductase.

    abstract::Biochemical characterization of the inhibition mechanism of Deltalac-acetogenins synthesized in our laboratory indicated that they are a new type of inhibitor of bovine heart mitochondrial NADH-ubiquinone oxidoreductase (complex I) [Murai, M., et al. (2006) Biochemistry 45, 9778-9787]. To identify the binding site of ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100454b

    authors: Kakutani N,Murai M,Sakiyama N,Miyoshi H

    更新日期:2010-06-15 00:00:00

  • Interaction of alamethicin with lecithin bilayers: a 31P and 2H NMR study.

    abstract::The interaction of alamethicin with artificial lecithin multilamellar dispersions was investigated by nuclear magnetic resonance (NMR) and Raman spectroscopies. 31P NMR studies revealed perturbation of the lipid head groups in the presence of the icosapeptide. Simulation of the 31P NMR spectra indicated that the obser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00347a019

    authors: Banerjee U,Zidovetzki R,Birge RR,Chan SI

    更新日期:1985-12-17 00:00:00

  • Insights into DNA polymerization mechanisms from structure and function analysis of HIV-1 reverse transcriptase.

    abstract::When the single-stranded RNA genome of HIV-1 is copied into double-stranded DNA, the viral enzyme reverse transcriptase (RT) catalyzes the addition of approximately 20,000 nucleotides; however, the precise mechanism of nucleotide addition is unknown. In this study, we attempt to integrate the genetic data and biochemi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00016a006

    authors: Patel PH,Jacobo-Molina A,Ding J,Tantillo C,Clark AD Jr,Raag R,Nanni RG,Hughes SH,Arnold E

    更新日期:1995-04-25 00:00:00

  • Structure of human epoxide hydrolase reveals mechanistic inferences on bifunctional catalysis in epoxide and phosphate ester hydrolysis.

    abstract::The X-ray crystal structure of human soluble epoxide hydrolase (sEH) has been determined at 2.6 A resolution, revealing a domain-swapped quaternary structure identical to that observed for the murine enzyme [Argiriadi, M. A., Morisseau, C., Hammock, B. D., and Christianson, D. W. (1999) Proc. Natl. Acad. Sci. U.S.A. 9...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi036189j

    authors: Gomez GA,Morisseau C,Hammock BD,Christianson DW

    更新日期:2004-04-27 00:00:00

  • Structure of a Zinc Porphyrin-Substituted Bacterioferritin and Photophysical Properties of Iron Reduction.

    abstract::The iron storage protein bacterioferritin (Bfr) binds up to 12 hemes b at specific sites in its protein shell. The heme b can be substituted with the photosensitizer Zn(II)-protoporphyrin IX (ZnPP), and photosensitized reductive iron release from the ferric oxyhydroxide {[FeO(OH)] n ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b01103

    authors: Benavides BS,Valandro S,Cioloboc D,Taylor AB,Schanze KS,Kurtz DM Jr

    更新日期:2020-04-28 00:00:00

  • Probing Proline Residues in the Prokaryotic Ligand-Gated Ion Channel, ELIC.

    abstract::Erwinia ligand-gated ion channel (ELIC) is a bacterial homologue of vertebrate pentameric ligand-gated ion channels (pLGICs) and has proven to be a valuable model for understanding the structure and function of this important protein family. There is nevertheless still a question about whether molecular details can be...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00379

    authors: Mosesso R,Dougherty DA,Lummis SCR

    更新日期:2018-07-10 00:00:00

  • Molten globule formation in apomyoglobin monitored by the fluorescent probe Nile Red.

    abstract::The interaction of nile red (NR) with apomyoglobin (ApoMb) in the native (pH 7) and molten globule (pH 4) states was investigated using experimental and computational methods. NR binds to hydrophobic locations in ApoMb with higher affinity (K(d) = 25 +/- 5 microM) in the native state than in the molten globule state (...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051905y

    authors: Polverini E,Cugini G,Annoni F,Abbruzzetti S,Viappiani C,Gensch T

    更新日期:2006-04-25 00:00:00

  • Direct electrochemistry of protein-protein complexes involving cytochrome c, cytochrome b5, and plastocyanin.

    abstract::The direct electrochemistry of the cytochrome c/cytochrome b5 and cytochrome c/plastocyanin complexes has been investigated at edge-plane graphite and modified gold electrode surfaces, which are selective for one of the two components of the complex. Electrochemical response of one protein at an otherwise electrostati...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00465a010

    authors: Bagby S,Barker PD,Guo LH,Hill HA

    更新日期:1990-04-03 00:00:00

  • Synthesis of lysogangliosides.

    abstract::The synthesis of gangliosides GM3, GM2, GM1, and GD1a solely lacking the fatty acid moiety, and thus called lysogangliosides in analogy to lysophospholipids, is described. Since a selective elimination of the fatty acid residue has not been achieved as yet, the gangliosides were first subjected to alkaline hydrolysis....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00323a042

    authors: Neuenhofer S,Schwarzmann G,Egge H,Sandhoff K

    更新日期:1985-01-15 00:00:00

  • DNA binding mechanism of O6-alkylguanine-DNA alkyltransferase: stoichiometry and effects of DNA base composition and secondary structure on complex stability.

    abstract::O6-Alkylguanine-DNA alkyltransferase (AGT) is an important cellular defense against the mutagenic effects of DNA alkylating agents. In humans this defense can contribute to the ability of some tumors to resist the effects of chemotherapeutic agents that act through DNA alkylation. We report here studies that character...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960971k

    authors: Fried MG,Kanugula S,Bromberg JL,Pegg AE

    更新日期:1996-12-03 00:00:00

  • Cloning and characterization of a highly reiterated 5.8-kilobase pair nucleolar EcoRI DNA fragment found in Novikoff hepatoma ascites cells.

    abstract::The DNA of Novikoff hepatoma ascites cells was found to contain a 3.6-megadalton EcoRI restriction fragment, referred to as EcoRI fragment A (Parker et al., 1979). C0t analyses demonstrated an enrichment of fragment A sequences in Novikoff hepatoma genome relative to normal rat liver DNA. This fragment was cloned in l...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00507a017

    authors: Parker DL,Busch H,Rothblum LI

    更新日期:1981-02-17 00:00:00

  • Cytochrome c peroxidase mutant active site structures probed by resonance Raman and infrared signatures of the CO adducts.

    abstract::Vibrational frequencies associated with FeC and CO stretching and FeCO bending modes have been determined via resonance Raman (RR) and infrared (IR) spectroscopy for cytochrome c peroxidase (CCP) mutants prepared by site-directed mutagenesis. These include the bacterial "wild type", CCP(MI), and mutations involving gr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00415a015

    authors: Smulevich G,Mauro JM,Fishel LA,English AM,Kraut J,Spiro TG

    更新日期:1988-07-26 00:00:00

  • Intersubunit association induces unique allosteric dependence of the T127L CRP mutant on pH.

    abstract::The allosteric activation of the T127-->L mutant of 3',5'-cyclic adenosine monophosphate (cAMP) receptor protein (CRP) by cAMP changes from an exothermic, independent two-site binding mechanism at pH 7.0 to an endothermic, interacting two-site binding mechanism at pH 5.2, similar to that observed for CRP at pH 7.0 and...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000225m

    authors: Shi Y,Wang S,Schwarz FP

    更新日期:2000-06-20 00:00:00

  • A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range.

    abstract::Guanidine hydrochloride (GdnHCl) and thermally induced unfolding measurements on the oxidized form of Escherichia coli thioredoxin at pH 7 were combined for the purpose of assessing the functional dependence of unfolding free energy changes on denaturant concentration over an extended GdnHCl concentration range. Conve...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00135a022

    authors: Santoro MM,Bolen DW

    更新日期:1992-05-26 00:00:00

  • Imaging of kinked configurations of DNA molecules undergoing orthogonal field alternating gel electrophoresis by fluorescence microscopy.

    abstract::The dynamics of individual DNA molecules undergoing orthogonal field alternating gel electrophoresis (OFAGE) have been studied by use of T2 DNA molecules labeled with a dye and visualized with a fluorescence microscope. The mechanism of reorientation used by a molecule to align itself in the direction of the new ortho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00465a036

    authors: Gurrieri S,Rizzarelli E,Beach D,Bustamante C

    更新日期:1990-04-03 00:00:00

  • Polymerization properties of the Thermotoga maritima actin MreB: roles of temperature, nucleotides, and ions.

    abstract::MreB is a bacterial orthologue of actin that affects cell shape, polarity, and chromosome segregation. Although a significant body of work has explored its cellular functions, we know very little about the biochemical behavior of MreB. We have cloned, overexpressed in Escherichia coli, and purified untagged MreB1 from...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701538e

    authors: Bean GJ,Amann KJ

    更新日期:2008-01-15 00:00:00

  • Excitation-Wavelength-Dependent Photocycle Initiation Dynamics Resolve Heterogeneity in the Photoactive Yellow Protein from Halorhodospira halophila.

    abstract::Photoactive yellow proteins (PYPs) make up a diverse class of blue-light-absorbing bacterial photoreceptors. Electronic excitation of the p-coumaric acid chromophore covalently bound within PYP results in triphasic quenching kinetics; however, the molecular basis of this behavior remains unresolved. Here we explore th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01114

    authors: Mix LT,Carroll EC,Morozov D,Pan J,Gordon WR,Philip A,Fuzell J,Kumauchi M,van Stokkum I,Groenhof G,Hoff WD,Larsen DS

    更新日期:2018-03-20 00:00:00