Structure of a Zinc Porphyrin-Substituted Bacterioferritin and Photophysical Properties of Iron Reduction.

Abstract:

:The iron storage protein bacterioferritin (Bfr) binds up to 12 hemes b at specific sites in its protein shell. The heme b can be substituted with the photosensitizer Zn(II)-protoporphyrin IX (ZnPP), and photosensitized reductive iron release from the ferric oxyhydroxide {[FeO(OH)] n } core inside the ZnPP-Bfr protein shell was demonstrated [Cioloboc, D., et al. (2018) Biomacromolecules19, 178-187]. This report describes the X-ray crystal structure of ZnPP-Bfr and the effects of loaded iron on the photophysical properties of the ZnPP. The crystal structure of ZnPP-Bfr shows a unique six-coordinate zinc in the ZnPP with two axial methionine sulfur ligands. Steady state and transient ultraviolet-visible absorption and luminescence spectroscopies show that irradiation with light overlapping the Soret absorption causes oxidation of ZnPP to the cation radical ZnPP•+ only when the ZnPP-Bfr is loaded with [FeO(OH)] n . Femtosecond transient absorption spectroscopy shows that this photooxidation occurs from the singlet excited state (1ZnPP*) on the picosecond time scale and is consistent with two oxidizing populations of Fe3+, which do not appear to involve the ferroxidase center iron. We propose that [FeO(OH)] n clusters at or near the inner surface of the protein shell are responsible for ZnPP photooxidation. Hopping of the photoinjected electrons through the [FeO(OH)] n would effectively cause migration of Fe2+ through the inner cavity to pores where it exits the protein. Reductive iron mobilization is presumed to be a physiological function of Bfrs. The phototriggered Fe3+ reduction could be used to identify the sites of iron mobilization within the Bfr protein shell.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Benavides BS,Valandro S,Cioloboc D,Taylor AB,Schanze KS,Kurtz DM Jr

doi

10.1021/acs.biochem.9b01103

subject

Has Abstract

pub_date

2020-04-28 00:00:00

pages

1618-1629

issue

16

eissn

0006-2960

issn

1520-4995

journal_volume

59

pub_type

杂志文章
  • Kinetic stability may determine the interaction dynamics of the bifunctional protein DCoH1, the dimerization cofactor of the transcription factor HNF-1α .

    abstract::The two disparate functions of DCoH1 (dimerization cofactor of HNF-1)/PCD (pterin-4a-carbinolamine dehydratase) are associated with a change in oligomeric state. DCoH dimers enhance the activity of the diabetes-associated transcription factor HNF-1α (hepatocyte nuclear factor-1α), while the PCD activity of DCoH1 homot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1015056

    authors: Rho H,Jones CN,Rose RB

    更新日期:2010-11-30 00:00:00

  • Average density and size of microclusters of epidermal growth factor receptors on A431 cells.

    abstract::For some hormone receptors, the early events of signal transduction depend on their molecular arrangement and interactions at the cell surface. An understanding of the mechanism of signal transduction in general needs a careful analysis of the receptor distribution. Here, we present the first quantitative measurement ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00124a004

    authors: St-Pierre PR,Petersen NO

    更新日期:1992-03-10 00:00:00

  • Structure of the crystalline bilayer in the subgel phase of dipalmitoylphosphatidylglycerol.

    abstract::The structure of the subgel phase of dipalmitoylphosphatidylglycerol (DPPG) has been analyzed by X-ray diffraction techniques. Diffraction recorded from highly oriented DPPG specimens in the subgel phase extends to 2-A resolution. There are sharp lamellar reflections on the meridian, and other reflections lie on a ser...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00350a003

    authors: Blaurock AE,McIntosh TJ

    更新日期:1986-01-28 00:00:00

  • The 2.15 A crystal structure of Mycobacterium tuberculosis chorismate mutase reveals an unexpected gene duplication and suggests a role in host-pathogen interactions.

    abstract::Chorismate mutase catalyzes the first committed step toward the biosynthesis of the aromatic amino acids, phenylalanine and tyrosine. While this biosynthetic pathway exists exclusively in the cell cytoplasm, the Mycobacterium tuberculosis enzyme has been shown to be secreted into the extracellular medium. The secretor...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0606445

    authors: Qamra R,Prakash P,Aruna B,Hasnain SE,Mande SC

    更新日期:2006-06-13 00:00:00

  • Evolution of lipidic structures during model membrane fusion and the relation of this process to cell membrane fusion.

    abstract::The sequence of events involved in poly(ethylene glycol)-mediated fusion of small unilamellar vesicles (SUVs) has been studied. Fusion events were monitored using light scattering for vesicle aggregation, the fluorescence lifetime of membrane probe lipids (DPHpPC and NBD-PS) for membrane mixing, the aqueous fluorescen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970404c

    authors: Lee J,Lentz BR

    更新日期:1997-05-27 00:00:00

  • Cyclic peptides incorporating 4-carboxyphenylalanine and phosphotyrosine are potent inhibitors of pp60(c-)(src).

    abstract::The protein tyrosine kinase, pp60(c-)(src), is involved in cellular signaling and is activated during mitosis and in various tumors. We have been employing cyclic decapeptides to identify the determinants for substrate binding and phosphorylation to develop inhibitors competitive with protein substrates of Src. A stru...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992994f

    authors: Wang W,Ramdas L,Sun G,Ke S,Obeyesekere NU,Budde RJ,McMurray JS

    更新日期:2000-05-02 00:00:00

  • The amino acid sequence of chick skin collagen alpha1-CB7.

    abstract::The amino acid sequence of chick skin collagen alpha1-CB7, the 268 CNBr peptide from the helical portion of the alpha1 chain, has been determined by automatic and manual degradation of tryptic and chymotryptic peptides, and of the COOH-terminal fragment produced by cleavage with animal collagenase. The resulting seque...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00684a013

    authors: Highberger JH,Corbett C,Kang AH,Gross J

    更新日期:1975-07-01 00:00:00

  • Fidelity of the RNA-dependent DNA synthesis exhibited by the reverse transcriptases of human immunodeficiency virus types 1 and 2 and of murine leukemia virus: mispair extension frequencies.

    abstract::Human immunodeficiency viruses type 1 and 2 (HIV-1 and HIV-2, respectively) exhibit extensive genetic variations. It was postulated that much of this genetic variability stems from the low fidelity of the reverse transcription step. Both HIV reverse transcriptases (RTs) were shown to be particularly error-prone during...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00154a010

    authors: Bakhanashvili M,Hizi A

    更新日期:1992-10-06 00:00:00

  • Quaternary structure of the HSC70 cochaperone HIP.

    abstract::HSC70 interacting protein (HIP) is an essential cytoplasmic cochaperone involved in the regulation of HSC70 chaperone activity and the maturation of progesterone receptor. To determine the quaternary structure and the gross conformation of the protein in solution, a wide array of biochemical and biophysical techniques...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9917535

    authors: Velten M,Villoutreix BO,Ladjimi MM

    更新日期:2000-01-18 00:00:00

  • Specificity of antiparallel DNA triple helix formation.

    abstract::We have used DNase I footprinting to examine the formation of antiparallel DNA triple helices on DNA fragments containing the homopurine target sites (GGA)2GGX(GGA)2GG.(CCT)2CCZ(CCT)2CC (where X.Z is each base pair in turn), with the GA- and GT-rich oligonucleotides, (GGA)2GGN(GGA)2GG and (GGT)2GGN(GGT)2GG (N = each b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9609679

    authors: Chandler SP,Fox KR

    更新日期:1996-11-26 00:00:00

  • Quantification of quaternary structure stability in aggregation-prone proteins under physiological conditions: the transthyretin case.

    abstract::The quaternary structure stability of proteins is typically studied under conditions that accelerate their aggregation/unfolding processes on convenient laboratory time scales. Such conditions include high temperature or pressure, chaotrope-mediated unfolding, or low or high pH. These approaches have the limitation of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500739q

    authors: Robinson LZ,Reixach N

    更新日期:2014-10-21 00:00:00

  • Energy coupling in Escherichia coli DNA gyrase: the relationship between nucleotide binding, strand passage, and DNA supercoiling.

    abstract::Binding of the nonhydrolyzable ATP analogue 5'-adenylyl-beta, gamma-imidodiphosphate (ADPNP) to Escherichia coli DNA gyrase can lead to a limited noncatalytic supercoiling of DNA. Here we examine the efficiency of coupling between ADPNP binding and the change in linking number either of positively or negatively superc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952433y

    authors: Bates AD,O'Dea MH,Gellert M

    更新日期:1996-02-06 00:00:00

  • Peptide conformer acidity analysis of protein flexibility monitored by hydrogen exchange.

    abstract::The amide hydrogens that are exposed to solvent in the high-resolution X-ray structures of ubiquitin, FK506-binding protein, chymotrypsin inhibitor 2, and rubredoxin span a billion-fold range in hydroxide-catalyzed exchange rates which are predictable by continuum dielectric methods. To facilitate analysis of transien...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901219x

    authors: LeMaster DM,Anderson JS,Hernández G

    更新日期:2009-10-06 00:00:00

  • NMR localization of divalent cations at the active site of the Neurospora VS ribozyme provides insights into RNA-metal-ion interactions.

    abstract::Metal cations represent key elements of RNA structure and function. In the Neurospora VS ribozyme, metal cations play diverse roles; they are important for substrate recognition, formation of the active site, and shifting the pKa's of two key nucleobases that contribute to the general acid-base mechanism. Recently, we...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401484a

    authors: Bonneau E,Legault P

    更新日期:2014-01-28 00:00:00

  • Conformational changes in phospholipase A2 upon binding to micellar interfaces in the absence and presence of competitive inhibitors. A 1H and 15N NMR study.

    abstract::An NMR study has been made of porcine pancreatic phospholipase A2 (PLA) in three environments: free in solution, in a binary complex with dodecylphosphocholine micelles, and in a ternary complex with a micelle and the substrate-like inhibitor (R)-1-octyl-2-(N-dodecanoylamino)-2-deoxyglycero-3-phosph oglycol. 1H and 15...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00156a023

    authors: Peters AR,Dekker N,van den Berg L,Boelens R,Kaptein R,Slotboom AJ,de Haas GH

    更新日期:1992-10-20 00:00:00

  • Biochemical characterization of the HpxO enzyme from Klebsiella pneumoniae, a novel FAD-dependent urate oxidase.

    abstract::The HpxO enzyme from Klebsiella pneumoniae was recently proposed, on the basis of genetic studies, to catalyze the hydroxylation of uric acid to 5-hydroxyisourate as part of the purine catabolic pathway. Its primary sequence suggests that the HpxO catalytic activity depends on a flavin cofactor (FAD), contrasting with...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900160b

    authors: O'Leary SE,Hicks KA,Ealick SE,Begley TP

    更新日期:2009-04-14 00:00:00

  • Inhibition of protein synthesis in vesicular stomatitis virus infected Chinese hamster ovary cells: role of virus mRNA-ribonucleoprotein particle.

    abstract::Although host protein synthesis is preferentially inhibited, there is a steady decline in the ability of Chinese hamster ovary (CHO) cells infected with vesicular stomatitis virus (VSV) to synthesize both host and viral proteins. We previously reported finding an mRNA-ribonucleoprotein particle (mRNP) that contained a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00306a014

    authors: Rosen CA,Siekierka J,Ennis HL,Cohen PS

    更新日期:1984-05-22 00:00:00

  • Spectra, membrane binding, and potentiometric responses of new charge shift probes.

    abstract::The properties of a series of new potentiometric membrane probes have been explored. The probes all contain an (aminostyryl)pyridinium chromophore or a more highly conjugated analogue. The spectral properties of the dyes are discussed in terms of the excitation-induced charge shift from the pyridine to the aniline; th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00342a010

    authors: Fluhler E,Burnham VG,Loew LM

    更新日期:1985-10-08 00:00:00

  • Studies into the identity of the sites of insulin-stimulated insulin receptor serine phosphorylation. Characterization of synthetic peptide substrates for the insulin-stimulated insulin receptor serine kinase.

    abstract::The identity of the sites of insulin-stimulated serine phosphorylation in the human insulin receptor was examined by synthesizing peptides that together encompassed all the serine residues of the cytosolic portion of the beta-subunit and testing them as substrates for phosphorylation by a preparation of human insulin ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00029a025

    authors: Carter WG,Asamoah KA,Sale GJ

    更新日期:1995-07-25 00:00:00

  • Lung surfactant proteins, SP-B and SP-C, alter the thermodynamic properties of phospholipid membranes: a differential calorimetry study.

    abstract::The ability of the low molecular weight lung surfactant-associated proteins, SP-B and SP-C, to alter the thermotropic properties of synthetic multilamellar vesicles was tested using differential scanning calorimetry (DSC). The presence of either SP-B or SP-C in dipalmitoylphosphatidylcholine (DPPC) or dipalmitoylphosp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00053a026

    authors: Shiffer K,Hawgood S,Haagsman HP,Benson B,Clements JA,Goerke J

    更新日期:1993-01-19 00:00:00

  • Effects of replacement of a double bond by a cyclopropane ring in phosphatidylethanolamines: a 2H NMR study of phase transitions and molecular organization.

    abstract::The thermotropic behavior and molecular properties of 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE) and 1-palmitoyl-2-dihydrosterculoyl-sn-glycero-3-phosphoethanolamine (PDSPE) have been investigated by 2H NMR spectroscopy using samples selectively labeled at the 5'-, 9'-, 10'-, and 16'-positions of the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00325a038

    authors: Perly B,Smith IC,Jarrell HC

    更新日期:1985-02-12 00:00:00

  • Integrated function of a kinetic proofreading mechanism: steady-state analysis testing internal consistency of data obtained in vivo and in vitro and predicting parameter values.

    abstract::Experimental measurements of the kinetic mechanism involving isoleucyl-tRNA synthetase proofreading valyl-tRNAIle in Escherichia coli have been incorporated into the conventional Michaelis-Menten model for this system. The model was subjected to a detailed mathematical analysis in the steady state. The results of this...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00303a019

    authors: Okamoto M,Savageau MA

    更新日期:1984-04-10 00:00:00

  • Interactions of the antimicrobial peptides temporins with model biomembranes. Comparison of temporins B and L.

    abstract::Temporins are short (10-13 amino acids) and linear antimicrobial peptides first isolated from the skin of the European red frog, Rana temporaria, and are effective against Gram-positive bacteria and Candida albicans. To get insight into their mechanism(s) of action, we compared the effects on model membranes exerted b...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011929e

    authors: Zhao H,Rinaldi AC,Di Giulio A,Simmaco M,Kinnunen PK

    更新日期:2002-04-02 00:00:00

  • A concerted structural transition in the plasminogen activator inhibitor-1 mechanism of inhibition.

    abstract::The inhibition mechanism of serpins requires a change in structure to entrap the target proteinase as a stable acyl-enzyme complex. Although it has generally been assumed that reactive center loop insertion and associated conformational change proceeds in a concerted manner, this has not been demonstrated directly. Th...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi025967p

    authors: Blouse GE,Perron MJ,Thompson JH,Day DE,Link CA,Shore JD

    更新日期:2002-10-08 00:00:00

  • Mutation induced in vitro on a C-8 guanine aminofluorene containing template by a modified T7 DNA polymerase.

    abstract::We reacted uracil-containing M13mp2 DNA with N-hydroxy-2-aminofluorene to produce a template with N-(deoxyguanosin-8-yl)-2-aminofluorene adducts. This template was hybridized to a non-uracil-containing linear fragment from which the lac z complementing insert had been removed to produce a gapped substrate. DNA synthes...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00433a014

    authors: Sahm J,Turkington E,LaPointe D,Strauss B

    更新日期:1989-04-04 00:00:00

  • Effect of the carbohydrate moiety on the secondary structure of beta 2-glycoprotein. I. Implications for the biosynthesis and folding of glycoproteins.

    abstract::By use of six highly purified exoglycosidases with well-defined specificity, the oligosaccharide units of human plasma beta 2-glycoprotein I (beta 2I) were modified by sequential enzymatic degradation. The released monosaccharides (NeuAc, Gal, GlcNAc, and Man) were quantified, and the carbohydrate compositions of the ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00478a020

    authors: Walsh MT,Watzlawick H,Putnam FW,Schmid K,Brossmer R

    更新日期:1990-07-03 00:00:00

  • Kinetic consequences of introducing a proximal selenocysteine ligand into cytochrome P450cam.

    abstract::The structural, electronic, and catalytic properties of cytochrome P450cam are subtly altered when the cysteine that coordinates to the heme iron is replaced with a selenocysteine. To map the effects of the sulfur-to-selenium substitution on the individual steps of the catalytic cycle, we conducted a comparative kinet...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b00939

    authors: Vandemeulebroucke A,Aldag C,Stiebritz MT,Reiher M,Hilvert D

    更新日期:2015-11-10 00:00:00

  • A carbon-13 nuclear magnetic resonance study of hyperactive and hypoactive derivatives of luteinizing hormone-releasing hormone: des-Gly-NH210-[DLeu6]LH-RH ethylamide and des-Gly-NH210-[L-Leu6]LH-RH ethylamide.

    abstract::The carbon-13 (13C) nuclear magnetic resonance (NMR) behavior of the hyperactive analogue of luteinizing-hormone-releasing hormone (LH-RH), des-Gly-NH2(10)-[D-Leu6]LH-RH ethylamide, has been studied. The spectra are compared with those of the hypoactive des-Gly-NH2(10)-[L-Leu6]LH-RH ethylamide. Spin-lattice relaxation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00666a020

    authors: Deslauriers R,Komoroski RA,Levy GC,Seely JH,Smith IC

    更新日期:1976-10-19 00:00:00

  • Conformational Closure of the Catalytic Site of Human CD38 Induced by Calcium.

    abstract::First identified on the surface of lymphoids as a type II transmembrane protein, CD38 has now been established to have dual functions not only as a receptor but also as a multifunctional enzyme,catalyzing the synthesis of and hydrolysis of a general calcium messenger molecule, cyclic ADP-ribose(cADPR). The receptorial...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:

    authors: Liu Q,Graeff R,Kriksunov IA,Lam CM,Lee HC,Hao Q

    更新日期:2008-12-30 00:00:00

  • Phospholipase C hydrolysis of phospholipids in bilayers of mixed lipid compositions.

    abstract::Phosphatidylcholine phospholipase C (EC 3.1.4.3) from Bacillus cereus has been assayed with substrates in the form of large unilamellar vesicles. Phosphatidylcholine, phosphatidylethanolamine (also a substrate for the enzyme), sphingomyelin, and cholesterol have been mixed in various proportions, in binary, ternary, a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980615x

    authors: Ruiz-Argüello MB,Goñi FM,Alonso A

    更新日期:1998-08-18 00:00:00