Mutations in a gene encoding a novel protein tyrosine phosphatase cause progressive myoclonus epilepsy.

Abstract:

:Lafora's disease (LD; OMIM 254780) is an autosomal recessive form of progressive myoclonus epilepsy characterized by seizures and cumulative neurological deterioration. Onset occurs during late childhood and usually results in death within ten years of the first symptoms. With few exceptions, patients follow a homogeneous clinical course despite the existence of genetic heterogeneity. Biopsy of various tissues, including brain, revealed characteristic polyglucosan inclusions called Lafora bodies, which suggested LD might be a generalized storage disease. Using a positional cloning approach, we have identified at chromosome 6q24 a novel gene, EPM2A, that encodes a protein with consensus amino acid sequence indicative of a protein tyrosine phosphatase (PTP). mRNA transcripts representing alternatively spliced forms of EPM2A were found in every tissue examined, including brain. Six distinct DNA sequence variations in EPM2A in nine families, and one homozygous microdeletion in another family, have been found to cosegregate with LD. These mutations are predicted to cause deleterious effects in the putative protein product, named laforin, resulting in LD.

journal_name

Nat Genet

journal_title

Nature genetics

authors

Minassian BA,Lee JR,Herbrick JA,Huizenga J,Soder S,Mungall AJ,Dunham I,Gardner R,Fong CY,Carpenter S,Jardim L,Satishchandra P,Andermann E,Snead OC 3rd,Lopes-Cendes I,Tsui LC,Delgado-Escueta AV,Rouleau GA,Scherer SW

doi

10.1038/2470

subject

Has Abstract

pub_date

1998-10-01 00:00:00

pages

171-4

issue

2

eissn

1061-4036

issn

1546-1718

journal_volume

20

pub_type

杂志文章
  • Mammalian ultraconserved elements are strongly depleted among segmental duplications and copy number variants.

    abstract::An earlier search in the human, mouse and rat genomes for sequences that are 100% conserved in orthologous segments and > or = 200 bp in length identified 481 distinct sequences. These human-mouse-rat sequences, which represent ultraconserved elements (UCEs), are believed to be important for functions involving DNA bi...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1888

    authors: Derti A,Roth FP,Church GM,Wu CT

    更新日期:2006-10-01 00:00:00

  • A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase.

    abstract::The development of a quantitative understanding of viral evolution and the fitness landscape in HIV-1 drug resistance is a formidable challenge given the large number of available drugs and drug resistance mutations. We analyzed a dataset measuring the in vitro fitness of 70,081 virus samples isolated from HIV-1 subty...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.795

    authors: Hinkley T,Martins J,Chappey C,Haddad M,Stawiski E,Whitcomb JM,Petropoulos CJ,Bonhoeffer S

    更新日期:2011-05-01 00:00:00

  • Mice lacking the vitamin D receptor exhibit impaired bone formation, uterine hypoplasia and growth retardation after weaning.

    abstract::1 alpha,25-Dihydroxyvitamin D3[1 alpha,25(OH)2D3], an active form of vitamin D, has roles in many biological phenomena such as calcium homeostasis and bone formation, which are thought to be mediated by the 1 alpha,25(OH)2D3 receptor (VDR), a member of the nuclear hormone receptor superfamily. However, the molecular b...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0897-391

    authors: Yoshizawa T,Handa Y,Uematsu Y,Takeda S,Sekine K,Yoshihara Y,Kawakami T,Arioka K,Sato H,Uchiyama Y,Masushige S,Fukamizu A,Matsumoto T,Kato S

    更新日期:1997-08-01 00:00:00

  • Theoretical and empirical issues for marker-assisted breeding of congenic mouse strains.

    abstract::Congenic breeding strategies are becoming increasingly important as a greater number of complex trait linkages are identified. Traditionally, the development of a congenic strain has been a time-consuming endeavour, requiring ten generations of backcrosses. The recent advent of a dense molecular genetic map of the mou...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1197-280

    authors: Markel P,Shu P,Ebeling C,Carlson GA,Nagle DL,Smutko JS,Moore KJ

    更新日期:1997-11-01 00:00:00

  • A functional variant of lymphoid tyrosine phosphatase is associated with type I diabetes.

    abstract::We report that a single-nucleotide polymorphism (SNP) in the gene (PTPN22) encoding the lymphoid protein tyrosine phosphatase (LYP), a suppressor of T-cell activation, is associated with type 1 diabetes mellitus (T1D). The variants encoded by the two alleles, 1858C and 1858T, differ in a crucial amino acid residue inv...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1323

    authors: Bottini N,Musumeci L,Alonso A,Rahmouni S,Nika K,Rostamkhani M,MacMurray J,Meloni GF,Lucarelli P,Pellecchia M,Eisenbarth GS,Comings D,Mustelin T

    更新日期:2004-04-01 00:00:00

  • Genomic profiling of Sézary syndrome identifies alterations of key T cell signaling and differentiation genes.

    abstract::Sézary syndrome is a rare leukemic form of cutaneous T cell lymphoma characterized by generalized redness, scaling, itching and increased numbers of circulating atypical T lymphocytes. It is rarely curable, with poor prognosis. Here we present a multiplatform genomic analysis of 37 patients with Sézary syndrome that i...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3444

    authors: Wang L,Ni X,Covington KR,Yang BY,Shiu J,Zhang X,Xi L,Meng Q,Langridge T,Drummond J,Donehower LA,Doddapaneni H,Muzny DM,Gibbs RA,Wheeler DA,Duvic M

    更新日期:2015-12-01 00:00:00

  • Frequent somatic mutations in MAP3K5 and MAP3K9 in metastatic melanoma identified by exome sequencing.

    abstract::We sequenced eight melanoma exomes to identify new somatic mutations in metastatic melanoma. Focusing on the mitogen-activated protein (MAP) kinase kinase kinase (MAP3K) family, we found that 24% of melanoma cell lines have mutations in the protein-coding regions of either MAP3K5 or MAP3K9. Structural modeling predict...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.1041

    authors: Stark MS,Woods SL,Gartside MG,Bonazzi VF,Dutton-Regester K,Aoude LG,Chow D,Sereduk C,Niemi NM,Tang N,Ellis JJ,Reid J,Zismann V,Tyagi S,Muzny D,Newsham I,Wu Y,Palmer JM,Pollak T,Youngkin D,Brooks BR,Lanagan C,S

    更新日期:2011-12-25 00:00:00

  • Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation.

    abstract::After domestication, during a process of widespread range extension, barley adapted to a broad spectrum of agricultural environments. To explore how the barley genome responded to the environmental challenges it encountered, we sequenced the exomes of a collection of 267 georeferenced landraces and wild accessions. A ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3612

    authors: Russell J,Mascher M,Dawson IK,Kyriakidis S,Calixto C,Freund F,Bayer M,Milne I,Marshall-Griffiths T,Heinen S,Hofstad A,Sharma R,Himmelbach A,Knauft M,van Zonneveld M,Brown JW,Schmid K,Kilian B,Muehlbauer GJ,Stein N,

    更新日期:2016-09-01 00:00:00

  • The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.

    abstract::We report the 207-Mb genome sequence of the North American Arabidopsis lyrata strain MN47 based on 8.3× dideoxy sequence coverage. We predict 32,670 genes in this outcrossing species compared to the 27,025 genes in the selfing species Arabidopsis thaliana. The much smaller 125-Mb genome of A. thaliana, which diverged ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.807

    authors: Hu TT,Pattyn P,Bakker EG,Cao J,Cheng JF,Clark RM,Fahlgren N,Fawcett JA,Grimwood J,Gundlach H,Haberer G,Hollister JD,Ossowski S,Ottilar RP,Salamov AA,Schneeberger K,Spannagl M,Wang X,Yang L,Nasrallah ME,Bergelson J

    更新日期:2011-05-01 00:00:00

  • Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions.

    abstract::The importance of commensal microbes for human health is increasingly recognized, yet the impacts of evolutionary changes in human diet and culture on commensal microbiota remain almost unknown. Two of the greatest dietary shifts in human evolution involved the adoption of carbohydrate-rich Neolithic (farming) diets (...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2536

    authors: Adler CJ,Dobney K,Weyrich LS,Kaidonis J,Walker AW,Haak W,Bradshaw CJ,Townsend G,Sołtysiak A,Alt KW,Parkhill J,Cooper A

    更新日期:2013-04-01 00:00:00

  • Genomic privacy and limits of individual detection in a pool.

    abstract::Recent studies have demonstrated that statistical methods can be used to detect the presence of a single individual within a study group based on summary data reported from genome-wide association studies (GWAS). We present an analytical and empirical study of the statistical power of such methods. We thereby aim to p...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.436

    authors: Sankararaman S,Obozinski G,Jordan MI,Halperin E

    更新日期:2009-09-01 00:00:00

  • Modifiers of epigenetic reprogramming show paternal effects in the mouse.

    abstract::There is increasing evidence that epigenetic information can be inherited across generations in mammals, despite extensive reprogramming both in the gametes and in the early developing embryo. One corollary to this is that disrupting the establishment of epigenetic state in the gametes of a parent, as a result of hete...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng2031

    authors: Chong S,Vickaryous N,Ashe A,Zamudio N,Youngson N,Hemley S,Stopka T,Skoultchi A,Matthews J,Scott HS,de Kretser D,O'Bryan M,Blewitt M,Whitelaw E

    更新日期:2007-05-01 00:00:00

  • Exploring the genetic architecture of inflammatory bowel disease by whole-genome sequencing identifies association at ADCY7.

    abstract::To further resolve the genetic architecture of the inflammatory bowel diseases ulcerative colitis and Crohn's disease, we sequenced the whole genomes of 4,280 patients at low coverage and compared them to 3,652 previously sequenced population controls across 73.5 million variants. We then imputed from these sequences ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3761

    authors: Luo Y,de Lange KM,Jostins L,Moutsianas L,Randall J,Kennedy NA,Lamb CA,McCarthy S,Ahmad T,Edwards C,Serra EG,Hart A,Hawkey C,Mansfield JC,Mowat C,Newman WG,Nichols S,Pollard M,Satsangi J,Simmons A,Tremelling M,Uh

    更新日期:2017-02-01 00:00:00

  • Another piece of the autism puzzle.

    abstract::A new study has identified rare de novo mutations in SHANK2 in individuals with autism and/or mental retardation. SHANK2 encodes a scaffolding protein present in excitatory synapses. This finding sheds some light on the pathophysiology of social and cognitive disability. ...

    journal_title:Nature genetics

    pub_type: 评论,新闻

    doi:10.1038/ng0610-478

    authors: State MW

    更新日期:2010-06-01 00:00:00

  • A brief history of gene therapy.

    abstract::The concepts of gene therapy arose initially during the 1960s and early 1970s whilst the development of genetically marked cells lines and the clarification of mechanisms of cell transformation by the papaovaviruses polyoma and SV40 was in progress. With the arrival of recombinant DNA techniques, cloned genes became a...

    journal_title:Nature genetics

    pub_type: 历史文章,杂志文章,评审

    doi:10.1038/ng1092-93

    authors: Friedmann T

    更新日期:1992-10-01 00:00:00

  • iASPP oncoprotein is a key inhibitor of p53 conserved from worm to human.

    abstract::We have previously shown that ASPP1 and ASPP2 are specific activators of p53; one mechanism by which wild-type p53 is tolerated in human breast carcinomas is through loss of ASPP activity. We have further shown that 53BP2, which corresponds to a C-terminal fragment of ASPP2, acts as a dominant negative inhibitor of p5...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1070

    authors: Bergamaschi D,Samuels Y,O'Neil NJ,Trigiante G,Crook T,Hsieh JK,O'Connor DJ,Zhong S,Campargue I,Tomlinson ML,Kuwabara PE,Lu X

    更新日期:2003-02-01 00:00:00

  • Reply to 'Currently available bulk sequencing data do not necessarily support a model of neutral tumor evolution'.

    abstract:: ...

    journal_title:Nature genetics

    pub_type: 评论,信件

    doi:10.1038/s41588-018-0235-4

    authors: Werner B,Williams MJ,Barnes CP,Graham TA,Sottoriva A

    更新日期:2018-12-01 00:00:00

  • The parentage of a classic wine grape, Cabernet Sauvignon.

    abstract::The world's great wines are produced from a relatively small number of classic European cultivars of Vitis vinifera L Most are thought to be centuries old and their origins have long been the subject of speculation. Among the most prominent of these cultivars is Cabernet Sauvignon, described as "the world's most renow...

    journal_title:Nature genetics

    pub_type: 历史文章,杂志文章

    doi:10.1038/ng0597-84

    authors: Bowers JE,Meredith CP

    更新日期:1997-05-01 00:00:00

  • Publisher Correction: Eggs sense high-fat diet.

    abstract::In the version of this article originally published, a box was misplaced in Fig. 1. The error has been corrected in the HTML and PDF versions of the article. ...

    journal_title:Nature genetics

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41588-018-0137-5

    authors: Leitch HG,Hajkova P

    更新日期:2018-08-01 00:00:00

  • Mutations in the beta-tubulin gene TUBB2B result in asymmetrical polymicrogyria.

    abstract::Polymicrogyria is a relatively common but poorly understood defect of cortical development characterized by numerous small gyri and a thick disorganized cortical plate lacking normal lamination. Here we report de novo mutations in a beta-tubulin gene, TUBB2B, in four individuals and a 27-gestational-week fetus with bi...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.380

    authors: Jaglin XH,Poirier K,Saillour Y,Buhler E,Tian G,Bahi-Buisson N,Fallet-Bianco C,Phan-Dinh-Tuy F,Kong XP,Bomont P,Castelnau-Ptakhine L,Odent S,Loget P,Kossorotoff M,Snoeck I,Plessis G,Parent P,Beldjord C,Cardoso C,Repr

    更新日期:2009-06-01 00:00:00

  • A recurrent inactivating mutation in RHOA GTPase in angioimmunoblastic T cell lymphoma.

    abstract::The molecular mechanisms underlying angioimmunoblastic T cell lymphoma (AITL), a common type of mature T cell lymphoma of poor prognosis, are largely unknown. Here we report a frequent somatic mutation in RHOA (encoding p.Gly17Val) using exome and transcriptome sequencing of samples from individuals with AITL. Further...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2916

    authors: Yoo HY,Sung MK,Lee SH,Kim S,Lee H,Park S,Kim SC,Lee B,Rho K,Lee JE,Cho KH,Kim W,Ju H,Kim J,Kim SJ,Kim WS,Lee S,Ko YH

    更新日期:2014-04-01 00:00:00

  • An X-to-autosome retrogene is required for spermatogenesis in mice.

    abstract::We identified the gene carrying the juvenile spermatogonial depletion mutation (jsd), a recessive spermatogenic defect mapped to mouse chromosome 1 (refs. 1,2). We localized jsd to a 272-kb region and resequenced this area to identify the underlying mutation: a frameshift that severely truncates the predicted protein ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1390

    authors: Bradley J,Baltus A,Skaletsky H,Royce-Tolland M,Dewar K,Page DC

    更新日期:2004-08-01 00:00:00

  • Mutations in RNF135, a gene within the NF1 microdeletion region, cause phenotypic abnormalities including overgrowth.

    abstract::17q11 microdeletions that encompass NF1 cause 5%-10% of cases of neurofibromatosis type 1, and individuals with microdeletions are typically taller than individuals with intragenic NF1 mutations, suggesting that deletion of a neighboring gene might promote human growth. We identified mutations in RNF135, which is with...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng2083

    authors: Douglas J,Cilliers D,Coleman K,Tatton-Brown K,Barker K,Bernhard B,Burn J,Huson S,Josifova D,Lacombe D,Malik M,Mansour S,Reid E,Cormier-Daire V,Cole T,Childhood Overgrowth Collaboration.,Rahman N

    更新日期:2007-08-01 00:00:00

  • Variants with large effects on blood lipids and the role of cholesterol and triglycerides in coronary disease.

    abstract::Sequence variants affecting blood lipids and coronary artery disease (CAD) may enhance understanding of the atherogenicity of lipid fractions. Using a large resource of whole-genome sequence data, we examined rare and low-frequency variants for association with non-HDL cholesterol, HDL cholesterol, LDL cholesterol, an...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3561

    authors: Helgadottir A,Gretarsdottir S,Thorleifsson G,Hjartarson E,Sigurdsson A,Magnusdottir A,Jonasdottir A,Kristjansson H,Sulem P,Oddsson A,Sveinbjornsson G,Steinthorsdottir V,Rafnar T,Masson G,Jonsdottir I,Olafsson I,Eyjolfsson

    更新日期:2016-06-01 00:00:00

  • Targeted mutation in the col5a2 gene reveals a regulatory role for type V collagen during matrix assembly.

    abstract::The tissue-specific organization of collagen molecules into tridimensional macroaggregates determines the physiomechanical properties of most connective tissues, but the factors and mechanisms controlling this process are unknown. It has been postulated that quantitatively minor types V and XI collagen regulate the gr...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0195-31

    authors: Andrikopoulos K,Liu X,Keene DR,Jaenisch R,Ramirez F

    更新日期:1995-01-01 00:00:00

  • In vivo RNA interference demonstrates a role for Nramp1 in modifying susceptibility to type 1 diabetes.

    abstract::Type 1 diabetes is an autoimmune disease influenced by multiple genetic loci. Although more than 20 insulin-dependent diabetes (Idd) loci have been implicated in the nonobese diabetic (NOD) mouse model, few causal gene variants have been identified. Here we show that RNA interference (RNAi) can be used to probe candid...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1766

    authors: Kissler S,Stern P,Takahashi K,Hunter K,Peterson LB,Wicker LS

    更新日期:2006-04-01 00:00:00

  • Lung cancer susceptibility locus at 5p15.33.

    abstract::We carried out a genome-wide association study of lung cancer (3,259 cases and 4,159 controls), followed by replication in 2,899 cases and 5,573 controls. Two uncorrelated disease markers at 5p15.33, rs402710 and rs2736100 were detected by the genome-wide data (P = 2 x 10(-7) and P = 4 x 10(-6)) and replicated by the ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.254

    authors: McKay JD,Hung RJ,Gaborieau V,Boffetta P,Chabrier A,Byrnes G,Zaridze D,Mukeria A,Szeszenia-Dabrowska N,Lissowska J,Rudnai P,Fabianova E,Mates D,Bencko V,Foretova L,Janout V,McLaughlin J,Shepherd F,Montpetit A,Narod S

    更新日期:2008-12-01 00:00:00

  • Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland.

    abstract::Linkage disequilibrium mapping in isolated populations provides a powerful tool for fine structure localization of disease genes. Here, Luria and Delbrück's classical methods for analysing bacterial cultures are adapted to the study of human isolated founder populations in order to estimate (i) the recombination fract...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1192-204

    authors: Hästbacka J,de la Chapelle A,Kaitila I,Sistonen P,Weaver A,Lander E

    更新日期:1992-11-01 00:00:00

  • Genomic and molecular characterization of esophageal squamous cell carcinoma.

    abstract::Esophageal squamous cell carcinoma (ESCC) is prevalent worldwide and particularly common in certain regions of Asia. Here we report the whole-exome or targeted deep sequencing of 139 paired ESCC cases, and analysis of somatic copy number variations (SCNV) of over 180 ESCCs. We identified previously uncharacterized mut...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2935

    authors: Lin DC,Hao JJ,Nagata Y,Xu L,Shang L,Meng X,Sato Y,Okuno Y,Varela AM,Ding LW,Garg M,Liu LZ,Yang H,Yin D,Shi ZZ,Jiang YY,Gu WY,Gong T,Zhang Y,Xu X,Kalid O,Shacham S,Ogawa S,Wang MR,Koeffler HP

    更新日期:2014-05-01 00:00:00

  • Chaperone suppression of aggregation and altered subcellular proteasome localization imply protein misfolding in SCA1.

    abstract::Spinocerebellar ataxia type 1 (SCA1) is an autosomal dominant neurodegenerative disorder caused by expansion of a polyglutamine tract in ataxin-1. In affected neurons of SCA1 patients and transgenic mice, mutant ataxin-1 accumulates in a single, ubiquitin-positive nuclear inclusion. In this study, we show that these i...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/502

    authors: Cummings CJ,Mancini MA,Antalffy B,DeFranco DB,Orr HT,Zoghbi HY

    更新日期:1998-06-01 00:00:00