Variants with large effects on blood lipids and the role of cholesterol and triglycerides in coronary disease.

Abstract:

:Sequence variants affecting blood lipids and coronary artery disease (CAD) may enhance understanding of the atherogenicity of lipid fractions. Using a large resource of whole-genome sequence data, we examined rare and low-frequency variants for association with non-HDL cholesterol, HDL cholesterol, LDL cholesterol, and triglycerides in up to 119,146 Icelanders. We discovered 13 variants with large effects (within ANGPTL3, APOB, ABCA1, NR1H3, APOA1, LIPC, CETP, LDLR, and APOC1) and replicated 14 variants. Five variants within PCSK9, APOA1, ANGPTL4, and LDLR associate with CAD (33,090 cases and 236,254 controls). We used genetic risk scores for the lipid fractions to examine their causal relationship with CAD. The non-HDL cholesterol genetic risk score associates most strongly with CAD (P = 2.7 × 10(-28)), and no other genetic risk score associates with CAD after accounting for non-HDL cholesterol. The genetic risk score for non-HDL cholesterol confers CAD risk beyond that of LDL cholesterol (P = 5.5 × 10(-8)), suggesting that targeting atherogenic remnant cholesterol may reduce cardiovascular risk.

journal_name

Nat Genet

journal_title

Nature genetics

authors

Helgadottir A,Gretarsdottir S,Thorleifsson G,Hjartarson E,Sigurdsson A,Magnusdottir A,Jonasdottir A,Kristjansson H,Sulem P,Oddsson A,Sveinbjornsson G,Steinthorsdottir V,Rafnar T,Masson G,Jonsdottir I,Olafsson I,Eyjolfsson

doi

10.1038/ng.3561

subject

Has Abstract

pub_date

2016-06-01 00:00:00

pages

634-9

issue

6

eissn

1061-4036

issn

1546-1718

pii

ng.3561

journal_volume

48

pub_type

杂志文章
  • Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.

    abstract::The Cancer Genome Atlas Pan-Cancer Analysis Working Group collaborated on the Synapse software platform to share and evolve data, results and methodologies while performing integrative analysis of molecular profiling data from 12 tumor types. The group's work serves as a pilot case study that provides (i) a template f...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2761

    authors: Omberg L,Ellrott K,Yuan Y,Kandoth C,Wong C,Kellen MR,Friend SH,Stuart J,Liang H,Margolin AA

    更新日期:2013-10-01 00:00:00

  • Cretinism with combined hormone deficiency caused by a mutation in the PIT1 gene.

    abstract::Cretinism is marked by irreversible mental and growth retardation. We describe here an entirely new case of cretinism showing combined pituitary hormone deficiencies of thyrotropin, growth hormone and prolactin that appears to be caused by homozygosity for a nonsense mutation in the gene for the pituitary specific tra...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0492-56

    authors: Tatsumi K,Miyai K,Notomi T,Kaibe K,Amino N,Mizuno Y,Kohno H

    更新日期:1992-04-01 00:00:00

  • Identification of DOK genes as lung tumor suppressors.

    abstract::Genome-wide analyses of human lung adenocarcinoma have identified regions of consistent copy-number gain or loss, but in many cases the oncogenes and tumor suppressors presumed to reside in these loci remain to be determined. Here we identify the downstream of tyrosine kinase (Dok) family members Dok1, Dok2 and Dok3 a...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.527

    authors: Berger AH,Niki M,Morotti A,Taylor BS,Socci ND,Viale A,Brennan C,Szoke J,Motoi N,Rothman PB,Teruya-Feldstein J,Gerald WL,Ladanyi M,Pandolfi PP

    更新日期:2010-03-01 00:00:00

  • The deoxyguanosine kinase gene is mutated in individuals with depleted hepatocerebral mitochondrial DNA.

    abstract::Mitochondrial DNA (mtDNA)-depletion syndromes (MDS; OMIM 251880) are phenotypically heterogeneous, autosomal-recessive disorders characterized by tissue-specific reduction in mtDNA copy number. Affected individuals with the hepatocerebral form of MDS have early progressive liver failure and neurological abnormalities,...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng746

    authors: Mandel H,Szargel R,Labay V,Elpeleg O,Saada A,Shalata A,Anbinder Y,Berkowitz D,Hartman C,Barak M,Eriksson S,Cohen N

    更新日期:2001-11-01 00:00:00

  • Genomic profiling of Sézary syndrome identifies alterations of key T cell signaling and differentiation genes.

    abstract::Sézary syndrome is a rare leukemic form of cutaneous T cell lymphoma characterized by generalized redness, scaling, itching and increased numbers of circulating atypical T lymphocytes. It is rarely curable, with poor prognosis. Here we present a multiplatform genomic analysis of 37 patients with Sézary syndrome that i...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3444

    authors: Wang L,Ni X,Covington KR,Yang BY,Shiu J,Zhang X,Xi L,Meng Q,Langridge T,Drummond J,Donehower LA,Doddapaneni H,Muzny DM,Gibbs RA,Wheeler DA,Duvic M

    更新日期:2015-12-01 00:00:00

  • Quantifying influenza virus diversity and transmission in humans.

    abstract::Influenza A virus is characterized by high genetic diversity. However, most of what is known about influenza evolution has come from consensus sequences sampled at the epidemiological scale that only represent the dominant virus lineage within each infected host. Less is known about the extent of within-host virus div...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3479

    authors: Poon LL,Song T,Rosenfeld R,Lin X,Rogers MB,Zhou B,Sebra R,Halpin RA,Guan Y,Twaddle A,DePasse JV,Stockwell TB,Wentworth DE,Holmes EC,Greenbaum B,Peiris JS,Cowling BJ,Ghedin E

    更新日期:2016-02-01 00:00:00

  • Mutations of CASK cause an X-linked brain malformation phenotype with microcephaly and hypoplasia of the brainstem and cerebellum.

    abstract::CASK is a multi-domain scaffolding protein that interacts with the transcription factor TBR1 and regulates expression of genes involved in cortical development such as RELN. Here we describe a previously unreported X-linked brain malformation syndrome caused by mutations of CASK. All five affected individuals with CAS...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.194

    authors: Najm J,Horn D,Wimplinger I,Golden JA,Chizhikov VV,Sudi J,Christian SL,Ullmann R,Kuechler A,Haas CA,Flubacher A,Charnas LR,Uyanik G,Frank U,Klopocki E,Dobyns WB,Kutsche K

    更新日期:2008-09-01 00:00:00

  • The gene encoding phosphodiesterase 4D confers risk of ischemic stroke.

    abstract::We previously mapped susceptibility to stroke to chromosome 5q12. Here we finely mapped this locus and tested it for association with stroke. We found the strongest association in the gene encoding phosphodiesterase 4D (PDE4D), especially for carotid and cardiogenic stroke, the forms of stroke related to atheroscleros...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1245

    authors: Gretarsdottir S,Thorleifsson G,Reynisdottir ST,Manolescu A,Jonsdottir S,Jonsdottir T,Gudmundsdottir T,Bjarnadottir SM,Einarsson OB,Gudjonsdottir HM,Hawkins M,Gudmundsson G,Gudmundsdottir H,Andrason H,Gudmundsdottir AS,Sigur

    更新日期:2003-10-01 00:00:00

  • Modifiers of epigenetic reprogramming show paternal effects in the mouse.

    abstract::There is increasing evidence that epigenetic information can be inherited across generations in mammals, despite extensive reprogramming both in the gametes and in the early developing embryo. One corollary to this is that disrupting the establishment of epigenetic state in the gametes of a parent, as a result of hete...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng2031

    authors: Chong S,Vickaryous N,Ashe A,Zamudio N,Youngson N,Hemley S,Stopka T,Skoultchi A,Matthews J,Scott HS,de Kretser D,O'Bryan M,Blewitt M,Whitelaw E

    更新日期:2007-05-01 00:00:00

  • Independent mutations of the human CD3-epsilon gene resulting in a T cell receptor/CD3 complex immunodeficiency.

    abstract::The T-cell receptor (TCR) is composed of two glycoproteins (alpha and beta or gamma and delta) associated with four invariant polypeptides (CD3-gamma, delta, epsilon and zeta). The majority of TCR/CD3 complexes contain six polypeptide chains, and although there is some flexibility in the complex subunit stoichiometry ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0193-77

    authors: Soudais C,de Villartay JP,Le Deist F,Fischer A,Lisowska-Grospierre B

    更新日期:1993-01-01 00:00:00

  • A genome-wide association study identifies two new cervical cancer susceptibility loci at 4q12 and 17q12.

    abstract::To identify new genetic risk factors for cervical cancer, we conducted a genome-wide association study in the Han Chinese population. The initial discovery set included 1,364 individuals with cervical cancer (cases) and 3,028 female controls, and we selected a 'stringently matched samples' subset (829 cases and 990 co...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2687

    authors: Shi Y,Li L,Hu Z,Li S,Wang S,Liu J,Wu C,He L,Zhou J,Li Z,Hu T,Chen Y,Jia Y,Wang S,Wu L,Cheng X,Yang Z,Yang R,Li X,Huang K,Zhang Q,Zhou H,Tang F,Chen Z,Shen J,Jiang J,Ding H,Xing H,Zhang S,Qu P,S

    更新日期:2013-08-01 00:00:00

  • Error-prone bypass of DNA lesions during lagging-strand replication is a common source of germline and cancer mutations.

    abstract::Studies in experimental systems have identified a multitude of mutational mechanisms including DNA replication infidelity and DNA damage followed by inefficient repair or replicative bypass. However, the relative contributions of these mechanisms to human germline mutation remain unknown. Here, we show that error-pron...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-018-0285-7

    authors: Seplyarskiy VB,Akkuratov EE,Akkuratova N,Andrianova MA,Nikolaev SI,Bazykin GA,Adameyko I,Sunyaev SR

    更新日期:2019-01-01 00:00:00

  • A new statistic and its power to infer membership in a genome-wide association study using genotype frequencies.

    abstract::Aggregate results from genome-wide association studies (GWAS), such as genotype frequencies for cases and controls, were until recently often made available on public websites because they were thought to disclose negligible information concerning an individual's participation in a study. Homer et al. recently suggest...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.455

    authors: Jacobs KB,Yeager M,Wacholder S,Craig D,Kraft P,Hunter DJ,Paschal J,Manolio TA,Tucker M,Hoover RN,Thomas GD,Chanock SJ,Chatterjee N

    更新日期:2009-11-01 00:00:00

  • Association of cadherin 23 with polygenic inheritance and genetic modification of sensorineural hearing loss.

    abstract::Age-related hearing loss (AHL) in common inbred mouse strains is a genetically complex quantitative trait. We found a synonymous single-nucleotide polymorphism in exon 7 of Cdh23 that shows significant association with AHL and the deafness modifier mdfw (modifer of deafwaddler). The hypomorphic Cdh23(753A) allele caus...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1226

    authors: Noben-Trauth K,Zheng QY,Johnson KR

    更新日期:2003-09-01 00:00:00

  • A point mutation in the FMR-1 gene associated with fragile X mental retardation.

    abstract::The vast majority of patients with fragile X syndrome show a folate-sensitive fragile site at Xq27.3 (FRAXA) at the cytogenetic level, and both amplification of the (CGG)n repeat and hypermethylation of the CpG island in the 5' fragile X gene (FMR-1) at the molecular level. We have studied the FMR-1 gene of a patient ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0193-31

    authors: De Boulle K,Verkerk AJ,Reyniers E,Vits L,Hendrickx J,Van Roy B,Van den Bos F,de Graaff E,Oostra BA,Willems PJ

    更新日期:1993-01-01 00:00:00

  • X-chromosome inactivation occurs at different times in different tissues of the post-implantation mouse embryo.

    abstract::During mammalian development, one of the two X chromosomes in female embryos is randomly inactivated in the somatic cell in order to achieve gene dosage compensation. But is X inactivation established simultaneously or is it accomplished over time in a lineage-dependent fashion? We have examined this question in mouse...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0293-170

    authors: Tan SS,Williams EA,Tam PP

    更新日期:1993-02-01 00:00:00

  • Common variants at 6p21.1 are associated with large artery atherosclerotic stroke.

    abstract::Genome-wide association studies (GWAS) have not consistently detected replicable genetic risk factors for ischemic stroke, potentially due to etiological heterogeneity of this trait. We performed GWAS of ischemic stroke and a major ischemic stroke subtype (large artery atherosclerosis, LAA) using 1,162 ischemic stroke...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/ng.2397

    authors: Holliday EG,Maguire JM,Evans TJ,Koblar SA,Jannes J,Sturm JW,Hankey GJ,Baker R,Golledge J,Parsons MW,Malik R,McEvoy M,Biros E,Lewis MD,Lincz LF,Peel R,Oldmeadow C,Smith W,Moscato P,Barlera S,Bevan S,Bis JC,Boer

    更新日期:2012-10-01 00:00:00

  • Genome-wide association study identifies a common variant associated with risk of endometrial cancer.

    abstract::Endometrial cancer is the most common malignancy of the female genital tract in developed countries. To identify genetic variants associated with endometrial cancer risk, we performed a genome-wide association study involving 1,265 individuals with endometrial cancer (cases) from Australia and the UK and 5,190 control...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.812

    authors: Spurdle AB,Thompson DJ,Ahmed S,Ferguson K,Healey CS,O'Mara T,Walker LC,Montgomery SB,Dermitzakis ET,Australian National Endometrial Cancer Study Group.,Fahey P,Montgomery GW,Webb PM,Fasching PA,Beckmann MW,Ekici AB,Hein A

    更新日期:2011-05-01 00:00:00

  • Small island, big genetic discoveries.

    abstract::Three new studies have identified new genes and sequence variants implicated in blood lipids, inflammatory markers, hemoglobin levels and adult height variation in Sardinia. These reports highlight the usefulness of large-scale genotype imputation based on whole-genome sequencing, particularly in isolated populations,...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3426

    authors: Lettre G,Hirschhorn JN

    更新日期:2015-11-01 00:00:00

  • The polycystic kidney disease 1 (PKD1) gene encodes a novel protein with multiple cell recognition domains.

    abstract::Characterization of the polycystic kidney disease 1 (PKD1) gene has been complicated by genomic rearrangements on chromosome 16. We have used an exon linking strategy, taking RNA from a cell line containing PKD1 but not the duplicate loci, to clone a cDNA contig of the entire transcript. The transcript consists of 14,...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0695-151

    authors: Hughes J,Ward CJ,Peral B,Aspinwall R,Clark K,San Millán JL,Gamble V,Harris PC

    更新日期:1995-06-01 00:00:00

  • Integrated human genome-wide maps constructed using the CEPH reference panel.

    abstract::High resolution linkage maps have proven to be invaluable tools in genetic investigations. We have assembled a collection of genetic maps constructed from primary data collected from investigators performing genotyping using the Centre Etude Polymorphism Humain (CEPH) reference pedigree panel. These maps were construc...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0494-391

    authors: Buetow KH,Weber JL,Ludwigsen S,Scherpbier-Heddema T,Duyk GM,Sheffield VC,Wang Z,Murray JC

    更新日期:1994-04-01 00:00:00

  • A component of the transcriptional repressor MeCP1 shares a motif with DNA methyltransferase and HRX proteins.

    abstract::Methylation of cytosines within the sequence CpG is essential for mouse development and has been linked to transcriptional suppression in vertebrate systems. Methyl-CpG binding proteins (MeCPs) 1 and 2 bind preferentially to methylated DNA and can inhibit transcription. The gene for MeCP2 has been cloned and a methyl-...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0797-256

    authors: Cross SH,Meehan RR,Nan X,Bird A

    更新日期:1997-07-01 00:00:00

  • Substitutions in woolly mammoth hemoglobin confer biochemical properties adaptive for cold tolerance.

    abstract::We have genetically retrieved, resurrected and performed detailed structure-function analyses on authentic woolly mammoth hemoglobin to reveal for the first time both the evolutionary origins and the structural underpinnings of a key adaptive physiochemical trait in an extinct species. Hemoglobin binds and carries O(2...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.574

    authors: Campbell KL,Roberts JE,Watson LN,Stetefeld J,Sloan AM,Signore AV,Howatt JW,Tame JR,Rohland N,Shen TJ,Austin JJ,Hofreiter M,Ho C,Weber RE,Cooper A

    更新日期:2010-06-01 00:00:00

  • Biological and biomedical implications of the co-evolution of pathogens and their hosts.

    abstract::Co-evolution between host and pathogen is, in principle, a powerful determinant of the biology and genetics of infection and disease. Yet co-evolution has proven difficult to demonstrate rigorously in practice, and co-evolutionary thinking is only just beginning to inform medical or veterinary research in any meaningf...

    journal_title:Nature genetics

    pub_type: 杂志文章,评审

    doi:10.1038/ng1202-569

    authors: Woolhouse ME,Webster JP,Domingo E,Charlesworth B,Levin BR

    更新日期:2002-12-01 00:00:00

  • Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

    abstract::Altering cytosine methylation by genetic means leads to a variety of developmental defects in mice, plants and fungi. Deregulation of cytosine methylation also has a role in human carcinogenesis. In some cases, these defects have been tied to the inheritance of epigenetic alterations (such as chromatin imprints and DN...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/8803

    authors: Jeddeloh JA,Stokes TL,Richards EJ

    更新日期:1999-05-01 00:00:00

  • Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution.

    abstract::Human endogenous retroviruses (HERVs), which are remnants of past retroviral infections of the germline cells of our ancestors, make up as much as 8% of the human genome and may even outnumber genes. Most HERVs seem to have entered the genome between 10 and 50 million years ago, and they comprise over 200 distinct gro...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng775

    authors: Hughes JF,Coffin JM

    更新日期:2001-12-01 00:00:00

  • Common variants at ABCA7, MS4A6A/MS4A4E, EPHA1, CD33 and CD2AP are associated with Alzheimer's disease.

    abstract::We sought to identify new susceptibility loci for Alzheimer's disease through a staged association study (GERAD+) and by testing suggestive loci reported by the Alzheimer's Disease Genetic Consortium (ADGC) in a companion paper. We undertook a combined analysis of four genome-wide association datasets (stage 1) and id...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/ng.803

    authors: Hollingworth P,Harold D,Sims R,Gerrish A,Lambert JC,Carrasquillo MM,Abraham R,Hamshere ML,Pahwa JS,Moskvina V,Dowzell K,Jones N,Stretton A,Thomas C,Richards A,Ivanov D,Widdowson C,Chapman J,Lovestone S,Powell J,Pr

    更新日期:2011-05-01 00:00:00

  • A major quantitative trait locus determining serum leptin levels and fat mass is located on human chromosome 2.

    abstract::Obesity is a major predisposing factor for the development of several chronic diseases including non-insulin dependent diabetes mellitus (NIDDM) and coronary heart disease (CHD). Leptin is a serum protein which is secreted by adipocytes and thought to play a role in the regulation of body fat. Leptin levels in humans ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0397-273

    authors: Comuzzie AG,Hixson JE,Almasy L,Mitchell BD,Mahaney MC,Dyer TD,Stern MP,MacCluer JW,Blangero J

    更新日期:1997-03-01 00:00:00

  • Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus.

    abstract::Domestication of cereal crops, such as maize, wheat and rice, had a profound influence on agriculture and the establishment of human civilizations. One major improvement was an increase in seed number per inflorescence, which enhanced yield and simplified harvesting and storage. The ancestor of maize, teosinte, makes ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2534

    authors: Bommert P,Nagasawa NS,Jackson D

    更新日期:2013-03-01 00:00:00

  • Increased insulin sensitivity and hypoglycaemia in mice lacking the p85 alpha subunit of phosphoinositide 3-kinase.

    abstract::The hallmark of type 2 diabetes, the most common metabolic disorder, is a defect in insulin-stimulated glucose transport in peripheral tissues. Although a role for phosphoinositide-3-kinase (PI3K) activity in insulin-stimulated glucose transport and glucose transporter isoform 4 (Glut4) translocation has been suggeste...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/6023

    authors: Terauchi Y,Tsuji Y,Satoh S,Minoura H,Murakami K,Okuno A,Inukai K,Asano T,Kaburagi Y,Ueki K,Nakajima H,Hanafusa T,Matsuzawa Y,Sekihara H,Yin Y,Barrett JC,Oda H,Ishikawa T,Akanuma Y,Komuro I,Suzuki M,Yamamura K,

    更新日期:1999-02-01 00:00:00