Genomic profiling of Sézary syndrome identifies alterations of key T cell signaling and differentiation genes.

Abstract:

:Sézary syndrome is a rare leukemic form of cutaneous T cell lymphoma characterized by generalized redness, scaling, itching and increased numbers of circulating atypical T lymphocytes. It is rarely curable, with poor prognosis. Here we present a multiplatform genomic analysis of 37 patients with Sézary syndrome that implicates dysregulation of cell cycle checkpoint and T cell signaling. Frequent somatic alterations were identified in TP53, CARD11, CCR4, PLCG1, CDKN2A, ARID1A, RPS6KA1 and ZEB1. Activating CCR4 and CARD11 mutations were detected in nearly one-third of patients. ZEB1, encoding a transcription repressor essential for T cell differentiation, was deleted in over one-half of patients. IL32 and IL2RG were overexpressed in nearly all cases. Our results demonstrate profound disruption of key signaling pathways in Sézary syndrome and suggest potential targets for new therapies.

journal_name

Nat Genet

journal_title

Nature genetics

authors

Wang L,Ni X,Covington KR,Yang BY,Shiu J,Zhang X,Xi L,Meng Q,Langridge T,Drummond J,Donehower LA,Doddapaneni H,Muzny DM,Gibbs RA,Wheeler DA,Duvic M

doi

10.1038/ng.3444

subject

Has Abstract

pub_date

2015-12-01 00:00:00

pages

1426-34

issue

12

eissn

1061-4036

issn

1546-1718

pii

ng.3444

journal_volume

47

pub_type

杂志文章
  • The human PAX6 gene is mutated in two patients with aniridia.

    abstract::Aniridia is an inherited ocular disorder of variable expressivity characterized by iris hypoplasia. A candidate aniridia gene, AN, which is the human homologue of the mouse Pax-6 gene, has recently been isolated by positional cloning from the WAGR region of 11p13. Here we describe mutations in this gene in two cases o...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0892-328

    authors: Jordan T,Hanson I,Zaletayev D,Hodgson S,Prosser J,Seawright A,Hastie N,van Heyningen V

    更新日期:1992-08-01 00:00:00

  • Pleiotropic fitness effects of the Tre1-Gr5a region in Drosophila melanogaster.

    abstract::The abundance of transposable elements and DNA repeat sequences in mammalian genomes raises the question of whether such insertions represent passive evolutionary baggage or may influence the expression of complex traits. We addressed this question in Drosophila melanogaster, in which the effects of single transposabl...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1823

    authors: Rollmann SM,Magwire MM,Morgan TJ,Ozsoy ED,Yamamoto A,Mackay TF,Anholt RR

    更新日期:2006-07-01 00:00:00

  • Apolipoprotein E allele-specific antioxidant activity and effects on cytotoxicity by oxidative insults and beta-amyloid peptides.

    abstract::The apolipoprotein E (APOE) E4 allele is associated with Alzheimer's disease, cardiovascular disease, and decreased longevity. To probe the mechanism of these associations, cell lines were created which secrete each apoE isoform. ApoE conditioned media, purified apoE, and commercially obtained apoE protected B12 cells...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0996-55

    authors: Miyata M,Smith JD

    更新日期:1996-09-01 00:00:00

  • Identification of novel genes, SYT and SSX, involved in the t(X;18)(p11.2;q11.2) translocation found in human synovial sarcoma.

    abstract::Human synovial sarcomas contain a recurrent and specific chromosomal translocation t(X;18)(p11.2;q11.2). By screening a synovial sarcoma cDNA library with a yeast artificial chromosome spanning the X chromosome breakpoint, we have identified a hybrid transcript that contains 5' sequences (designated SYT) mapping to ch...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0894-502

    authors: Clark J,Rocques PJ,Crew AJ,Gill S,Shipley J,Chan AM,Gusterson BA,Cooper CS

    更新日期:1994-08-01 00:00:00

  • Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation.

    abstract::To shed light on the peopling of South Asia and the origins of the morphological adaptations found there, we analyzed whole-genome sequences from 10 Andamanese individuals and compared them with sequences for 60 individuals from mainland Indian populations with different ethnic histories and with publicly available da...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3621

    authors: Mondal M,Casals F,Xu T,Dall'Olio GM,Pybus M,Netea MG,Comas D,Laayouni H,Li Q,Majumder PP,Bertranpetit J

    更新日期:2016-09-01 00:00:00

  • Reconstitution of human telomerase with the template RNA component hTR and the catalytic protein subunit hTRT.

    abstract::The maintenance of chromosome termini, or telomeres, requires the action of the enzyme telomerase, as conventional DNA polymerases cannot fully replicate the ends of linear molecules. Telomerase is expressed and telomere length is maintained in human germ cells and the great majority of primary human tumours. However,...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1297-498

    authors: Weinrich SL,Pruzan R,Ma L,Ouellette M,Tesmer VM,Holt SE,Bodnar AG,Lichtsteiner S,Kim NW,Trager JB,Taylor RD,Carlos R,Andrews WH,Wright WE,Shay JW,Harley CB,Morin GB

    更新日期:1997-12-01 00:00:00

  • Mouse mutagenesis on target.

    abstract::Large-scale mutagenesis of the mouse genome is an essential task associated with the Human Genome Project. The two opposing schools of direct and reverse genetics have demonstrated comparable advantages, and yet large numbers of mutant lines have mostly been the prerogative of direct genetics. An improved gene-trappin...

    journal_title:Nature genetics

    pub_type: 评论,新闻

    doi:10.1038/90017

    authors: Jackson IJ

    更新日期:2001-07-01 00:00:00

  • Mutations in the fibroblast growth factor receptor 2 gene cause Crouzon syndrome.

    abstract::Crouzon syndrome is an autosomal dominant condition causing premature fusion of the cranial sutures (craniosynostosis) and maps to chromosome 10q25-q26. We now present evidence that mutations in the fibroblast growth factor receptor 2 gene (FGFR2) cause Crouzon syndrome. We found SSCP variations in the B exon of FGFR2...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0994-98

    authors: Reardon W,Winter RM,Rutland P,Pulleyn LJ,Jones BM,Malcolm S

    更新日期:1994-09-01 00:00:00

  • Jackson-Weiss and Crouzon syndromes are allelic with mutations in fibroblast growth factor receptor 2.

    abstract::Jackson-Weiss syndrome is an autosomal dominant condition characterized by craniosynostosis, foot anomalies and great phenotypic variability. Recently mutations in fibroblast growth factor receptor 2 (FGFR2) have been found in patients with another craniosynostotic syndrome, Crouzon syndrome. FGFR2 is a member of the ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1194-275

    authors: Jabs EW,Li X,Scott AF,Meyers G,Chen W,Eccles M,Mao JI,Charnas LR,Jackson CE,Jaye M

    更新日期:1994-11-01 00:00:00

  • Targeted mutation in the col5a2 gene reveals a regulatory role for type V collagen during matrix assembly.

    abstract::The tissue-specific organization of collagen molecules into tridimensional macroaggregates determines the physiomechanical properties of most connective tissues, but the factors and mechanisms controlling this process are unknown. It has been postulated that quantitatively minor types V and XI collagen regulate the gr...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0195-31

    authors: Andrikopoulos K,Liu X,Keene DR,Jaenisch R,Ramirez F

    更新日期:1995-01-01 00:00:00

  • The Capsella rubella genome and the genomic consequences of rapid mating system evolution.

    abstract::The shift from outcrossing to selfing is common in flowering plants, but the genomic consequences and the speed at which they emerge remain poorly understood. An excellent model for understanding the evolution of self fertilization is provided by Capsella rubella, which became self compatible <200,000 years ago. We re...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2669

    authors: Slotte T,Hazzouri KM,Ågren JA,Koenig D,Maumus F,Guo YL,Steige K,Platts AE,Escobar JS,Newman LK,Wang W,Mandáková T,Vello E,Smith LM,Henz SR,Steffen J,Takuno S,Brandvain Y,Coop G,Andolfatto P,Hu TT,Blanchette M,

    更新日期:2013-07-01 00:00:00

  • Convergent evolution of the genomes of marine mammals.

    abstract::Marine mammals from different mammalian orders share several phenotypic traits adapted to the aquatic environment and therefore represent a classic example of convergent evolution. To investigate convergent evolution at the genomic level, we sequenced and performed de novo assembly of the genomes of three species of m...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3198

    authors: Foote AD,Liu Y,Thomas GW,Vinař T,Alföldi J,Deng J,Dugan S,van Elk CE,Hunter ME,Joshi V,Khan Z,Kovar C,Lee SL,Lindblad-Toh K,Mancia A,Nielsen R,Qin X,Qu J,Raney BJ,Vijay N,Wolf JB,Hahn MW,Muzny DM,Worley KC,

    更新日期:2015-03-01 00:00:00

  • Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.

    abstract::The approach to annotating a genome critically affects the number and accuracy of genes identified in the genome sequence. Genome annotation based on stringent gene identification is prone to underestimate the complement of genes encoded in a genome. In contrast, over-prediction of putative genes followed by exhaustiv...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/85922

    authors: Gopal S,Schroeder M,Pieper U,Sczyrba A,Aytekin-Kurban G,Bekiranov S,Fajardo JE,Eswar N,Sanchez R,Sali A,Gaasterland T

    更新日期:2001-03-01 00:00:00

  • Mutations in the DNA methyltransferase gene DNMT3A cause an overgrowth syndrome with intellectual disability.

    abstract::Overgrowth disorders are a heterogeneous group of conditions characterized by increased growth parameters and other variable clinical features such as intellectual disability and facial dysmorphism. To identify new causes of human overgrowth, we performed exome sequencing in ten proband-parent trios and detected two d...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.2917

    authors: Tatton-Brown K,Seal S,Ruark E,Harmer J,Ramsay E,Del Vecchio Duarte S,Zachariou A,Hanks S,O'Brien E,Aksglaede L,Baralle D,Dabir T,Gener B,Goudie D,Homfray T,Kumar A,Pilz DT,Selicorni A,Temple IK,Van Maldergem L,Yac

    更新日期:2014-04-01 00:00:00

  • iASPP oncoprotein is a key inhibitor of p53 conserved from worm to human.

    abstract::We have previously shown that ASPP1 and ASPP2 are specific activators of p53; one mechanism by which wild-type p53 is tolerated in human breast carcinomas is through loss of ASPP activity. We have further shown that 53BP2, which corresponds to a C-terminal fragment of ASPP2, acts as a dominant negative inhibitor of p5...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1070

    authors: Bergamaschi D,Samuels Y,O'Neil NJ,Trigiante G,Crook T,Hsieh JK,O'Connor DJ,Zhong S,Campargue I,Tomlinson ML,Kuwabara PE,Lu X

    更新日期:2003-02-01 00:00:00

  • Mutations in SNORD118 cause the cerebral microangiopathy leukoencephalopathy with calcifications and cysts.

    abstract::Although ribosomes are ubiquitous and essential for life, recent data indicate that monogenic causes of ribosomal dysfunction can confer a remarkable degree of specificity in terms of human disease phenotype. Box C/D small nucleolar RNAs (snoRNAs) are evolutionarily conserved non-protein-coding RNAs involved in riboso...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3661

    authors: Jenkinson EM,Rodero MP,Kasher PR,Uggenti C,Oojageer A,Goosey LC,Rose Y,Kershaw CJ,Urquhart JE,Williams SG,Bhaskar SS,O'Sullivan J,Baerlocher GM,Haubitz M,Aubert G,Barañano KW,Barnicoat AJ,Battini R,Berger A,Blair EM

    更新日期:2016-10-01 00:00:00

  • Studies of human, mouse and yeast homologues indicate a mitochondrial function for frataxin.

    abstract::Friedreich's ataxia is due to loss of function mutations in the gene encoding frataxin (FRDA). Frataxin is a protein of unknown function. In situ hybridization analyses revealed that mouse frataxin expression correlates well with the main site of neurodegeneration, but the expression pattern is broader than expected f...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0897-345

    authors: Koutnikova H,Campuzano V,Foury F,Dollé P,Cazzalini O,Koenig M

    更新日期:1997-08-01 00:00:00

  • Calcium oxalate urolithiasis in mice lacking anion transporter Slc26a6.

    abstract::Urolithiasis is one of the most common urologic diseases in industrialized societies. Calcium oxalate is the predominant component in 70-80% of kidney stones, and small changes in urinary oxalate concentration affect the risk of stone formation. SLC26A6 is an anion exchanger expressed on the apical membrane in many ep...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1762

    authors: Jiang Z,Asplin JR,Evan AP,Rajendran VM,Velazquez H,Nottoli TP,Binder HJ,Aronson PS

    更新日期:2006-04-01 00:00:00

  • The molecular basis of the human serum paraoxonase activity polymorphism.

    abstract::The organophosphate cholinesterase inhibitor paraoxon is hydrolysed by serum paraoxonase/arylesterase. A genetic polymorphism of paraoxonase (PON) activity which determines high versus low paraoxon hydrolysis in human populations, may determine sensitivity to parathion poisoning. We demonstrate that arginine at positi...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0193-73

    authors: Humbert R,Adler DA,Disteche CM,Hassett C,Omiecinski CJ,Furlong CE

    更新日期:1993-01-01 00:00:00

  • Mining the human genome using microarrays of open reading frames.

    abstract::To test the hypothesis that the human genome project will uncover many genes not previously discovered by sequencing of expressed sequence tags (ESTs), we designed and produced a set of microarrays using probes based on open reading frames (ORFs) in 350 Mb of finished and draft human sequence. Our approach aims to ide...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/81613

    authors: Penn SG,Rank DR,Hanzel DK,Barker DL

    更新日期:2000-11-01 00:00:00

  • Recurrent reciprocal 1q21.1 deletions and duplications associated with microcephaly or macrocephaly and developmental and behavioral abnormalities.

    abstract::Chromosome region 1q21.1 contains extensive and complex low-copy repeats, and copy number variants (CNVs) in this region have recently been reported in association with congenital heart defects, developmental delay, schizophrenia and related psychoses. We describe 21 probands with the 1q21.1 microdeletion and 15 proba...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.279

    authors: Brunetti-Pierri N,Berg JS,Scaglia F,Belmont J,Bacino CA,Sahoo T,Lalani SR,Graham B,Lee B,Shinawi M,Shen J,Kang SH,Pursley A,Lotze T,Kennedy G,Lansky-Shafer S,Weaver C,Roeder ER,Grebe TA,Arnold GL,Hutchison T,Rei

    更新日期:2008-12-01 00:00:00

  • Discovery of rare variants associated with blood pressure regulation through meta-analysis of 1.3 million individuals.

    abstract::Genetic studies of blood pressure (BP) to date have mainly analyzed common variants (minor allele frequency > 0.05). In a meta-analysis of up to ~1.3 million participants, we discovered 106 new BP-associated genomic regions and 87 rare (minor allele frequency ≤ 0.01) variant BP associations (P < 5 × 10-8), of which 32...

    journal_title:Nature genetics

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41588-020-00713-x

    authors: Surendran P,Feofanova EV,Lahrouchi N,Ntalla I,Karthikeyan S,Cook J,Chen L,Mifsud B,Yao C,Kraja AT,Cartwright JH,Hellwege JN,Giri A,Tragante V,Thorleifsson G,Liu DJ,Prins BP,Stewart ID,Cabrera CP,Eales JM,Akbarov A

    更新日期:2020-12-01 00:00:00

  • Genome-wide association study of PR interval.

    abstract::The electrocardiographic PR interval (or PQ interval) reflects atrial and atrioventricular nodal conduction, disturbances of which increase risk of atrial fibrillation. We report a meta-analysis of genome-wide association studies for PR interval from seven population-based European studies in the CHARGE Consortium: AG...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.517

    authors: Pfeufer A,van Noord C,Marciante KD,Arking DE,Larson MG,Smith AV,Tarasov KV,Müller M,Sotoodehnia N,Sinner MF,Verwoert GC,Li M,Kao WH,Köttgen A,Coresh J,Bis JC,Psaty BM,Rice K,Rotter JI,Rivadeneira F,Hofman A,Kors

    更新日期:2010-02-01 00:00:00

  • Genome-wide association study identifies a susceptibility locus at 21q21 for ventricular fibrillation in acute myocardial infarction.

    abstract::Sudden cardiac death from ventricular fibrillation during acute myocardial infarction is a leading cause of total and cardiovascular mortality. To our knowledge, we here report the first genome-wide association study for this trait, conducted in a set of 972 individuals with a first acute myocardial infarction, 515 of...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.623

    authors: Bezzina CR,Pazoki R,Bardai A,Marsman RF,de Jong JSSG,Blom MT,Scicluna BP,Jukema JW,Bindraban NR,Lichtner P,Pfeufer A,Bishopric NH,Roden DM,Meitinger T,Chugh SS,Myerburg RJ,Jouven X,Kääb S,Dekker LRC,Tan HL,Tanck M

    更新日期:2010-08-01 00:00:00

  • Evidence for co-evolution of gene order and recombination rate.

    abstract::There is increasing evidence in eukaryotic genomes that gene order is not random, even allowing for tandem duplication. Notably, in numerous genomes, genes of similar expression tend to be clustered. Are there other reasons for clustering of functionally similar genes? If genes are linked to enable genetic, rather tha...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1111

    authors: Pál C,Hurst LD

    更新日期:2003-03-01 00:00:00

  • Quantitative expression of Oct-3/4 defines differentiation, dedifferentiation or self-renewal of ES cells.

    abstract::Cell fate during development is defined by transcription factors that act as molecular switches to activate or repress specific gene expression programmes. The POU transcription factor Oct-3/4 (encoded by Pou5f1) is a candidate regulator in pluripotent and germline cells and is essential for the initial formation of a...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/74199

    authors: Niwa H,Miyazaki J,Smith AG

    更新日期:2000-04-01 00:00:00

  • RPA regulates telomerase action by providing Est1p access to chromosome ends.

    abstract::Replication protein A (RPA) is a highly conserved single-stranded DNA-binding protein involved in DNA replication, recombination and repair. We show here that RPA is present at the telomeres of the budding yeast Saccharomyces cerevisiae, with a maximal association in S phase. A truncation of the N-terminal region of R...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1284

    authors: Schramke V,Luciano P,Brevet V,Guillot S,Corda Y,Longhese MP,Gilson E,Géli V

    更新日期:2004-01-01 00:00:00

  • Ocular retardation mouse caused by Chx10 homeobox null allele: impaired retinal progenitor proliferation and bipolar cell differentiation.

    abstract::Ocular retardation (or) is a murine eye mutation causing microphthalmia, a thin hypocellular retina and optic nerve aplasia. Here we show that mice carrying the OrJ allele have a premature stop codon in the homeobox of the Chx10 gene, a gene expressed at high levels in uncommitted retinal progenitor cells and mature b...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0496-376

    authors: Burmeister M,Novak J,Liang MY,Basu S,Ploder L,Hawes NL,Vidgen D,Hoover F,Goldman D,Kalnins VI,Roderick TH,Taylor BA,Hankin MH,McInnes RR

    更新日期:1996-04-01 00:00:00

  • Mice lacking both subunits of lysosomal beta-hexosaminidase display gangliosidosis and mucopolysaccharidosis.

    abstract::The GM2 gangliosidoses, Tay-Sachs and Sandhoff diseases, are caused by mutations in the HEXA (alpha-subunit) and HEXB (beta-subunit) genes, respectively. Each gene encodes a subunit for the heterodimeric lysosomal enzyme, beta-hexosaminidase A (alpha beta), as well as for the homodimers beta-hexosaminidase B (beta bet...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1196-348

    authors: Sango K,McDonald MP,Crawley JN,Mack ML,Tifft CJ,Skop E,Starr CM,Hoffmann A,Sandhoff K,Suzuki K,Proia RL

    更新日期:1996-11-01 00:00:00

  • A multitrait GWAS sheds light on insulin resistance.

    abstract::A genome-wide study of fasting insulin, HDL cholesterol and triglycerides, designed to depict insulin resistance, identified 53 independent loci associated with a limited capacity to store fat in a healthy way. The increased power of this multitrait approach provides insights into an otherwise difficult-to-grasp pheno...

    journal_title:Nature genetics

    pub_type: 评论,杂志文章

    doi:10.1038/ng.3758

    authors: Heid IM,Winkler TW

    更新日期:2016-12-28 00:00:00