Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I.

Abstract:

:The three-dimensional structure of the 67K amino-terminal fragment of Escherichia coli DNA topoisomerase I has been determined to 2.2 A resolution. The polypeptide folds in an unusual way to give four distinct domains enclosing a hole large enough to accommodate a double-stranded DNA. The active-site tyrosyl residue, which is involved in the transient breakage of a DNA strand and the formation of a covalent enzyme-DNA intermediate, is present at the interface of two domains. The structure suggests a plausible mechanism by which E. coli DNA topoisomerase I and other members of the same DNA topoisomerase subfamily could catalyse the passage of one DNA strand through a transient break in another strand.

journal_name

Nature

journal_title

Nature

authors

Lima CD,Wang JC,Mondragón A

doi

10.1038/367138a0

subject

Has Abstract

pub_date

1994-01-13 00:00:00

pages

138-46

issue

6459

eissn

0028-0836

issn

1476-4687

journal_volume

367

pub_type

杂志文章

相关文献

NATURE文献大全
  • Plus çà change.

    abstract::For the past couple of centuries the penchant for prediction has been prevalent at century turns. How much have evaluations of scientific discovery and predictions for future advancement changed since those of the science commentators at the end of the last century? ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35011581

    authors: Heilbron JL,Bynum WF

    更新日期:1999-12-02 00:00:00

  • Direct detection of a break in the teraelectronvolt cosmic-ray spectrum of electrons and positrons.

    abstract::High-energy cosmic-ray electrons and positrons (CREs), which lose energy quickly during their propagation, provide a probe of Galactic high-energy processes and may enable the observation of phenomena such as dark-matter particle annihilation or decay. The CRE spectrum has been measured directly up to approximately 2 ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature24475

    authors: DAMPE Collaboration.

    更新日期:2017-12-07 00:00:00

  • Biosignatures as revealed by spectropolarimetry of Earthshine.

    abstract::Low-resolution intensity spectra of Earth's atmosphere obtained from space reveal strong signatures of life ('biosignatures'), such as molecular oxygen and methane with abundances far from chemical equilibrium, as well as the presence of a 'red edge' (a sharp increase of albedo for wavelengths longer than 700 nm) caus...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10778

    authors: Sterzik MF,Bagnulo S,Palle E

    更新日期:2012-02-29 00:00:00

  • Optogenetic dissection of a behavioural module in the vertebrate spinal cord.

    abstract::Locomotion relies on neural networks called central pattern generators (CPGs) that generate periodic motor commands for rhythmic movements. In vertebrates, the excitatory synaptic drive for inducing the spinal CPG can originate from either supraspinal glutamatergic inputs or from within the spinal cord. Here we identi...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature08323

    authors: Wyart C,Del Bene F,Warp E,Scott EK,Trauner D,Baier H,Isacoff EY

    更新日期:2009-09-17 00:00:00

  • Nanotechnology: 'buckypaper' from coaxial nanotubes.

    abstract::Double-walled carbon nanotubes are needed in a pure, highly crystalline form before features such as their electronic properties, thermal transport and mechanical behaviour can be investigated. Here we fabricate a paper-like material that consists of hexagonally packed bundles of clean, coaxial carbon nanotubes whose ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/433476a

    authors: Endo M,Muramatsu H,Hayashi T,Kim YA,Terrones M,Dresselhaus MS

    更新日期:2005-02-03 00:00:00

  • Conservation of the sizes for one but not another class of exons in two chick collagen genes.

    abstract::Type III collagen is often found in the same tissues as type I collagen, yet the function and nature of the fibrils formed by the two collagens differ markedly. To understand the evolutionary history of the collagen gene family in more detail, we isolated the gene for type III collagen and compared its structure with ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/310333a0

    authors: Yamada Y,Liau G,Mudryj M,Obici S,de Crombrugghe B

    更新日期:1984-07-26 00:00:00

  • A quantized microwave quadrupole insulator with topologically protected corner states.

    abstract::The theory of electric polarization in crystals defines the dipole moment of an insulator in terms of a Berry phase (geometric phase) associated with its electronic ground state. This concept not only solves the long-standing puzzle of how to calculate dipole moments in crystals, but also explains topological band str...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature25777

    authors: Peterson CW,Benalcazar WA,Hughes TL,Bahl G

    更新日期:2018-03-14 00:00:00

  • Links between erosion, runoff variability and seismicity in the Taiwan orogen.

    abstract::The erosion of mountain belts controls their topographic and structural evolution and is the main source of sediment delivered to the oceans. Mountain erosion rates have been estimated from current relief and precipitation, but a more complete evaluation of the controls on erosion rates requires detailed measurements ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02150

    authors: Dadson SJ,Hovius N,Chen H,Dade WB,Hsieh ML,Willett SD,Hu JC,Horng MJ,Chen MC,Stark CP,Lague D,Lin JC

    更新日期:2003-12-11 00:00:00

  • Global reference mapping of human transcription factor footprints.

    abstract::Combinatorial binding of transcription factors to regulatory DNA underpins gene regulation in all organisms. Genetic variation in regulatory regions has been connected with diseases and diverse phenotypic traits1, but it remains challenging to distinguish variants that affect regulatory function2. Genomic DNase I foot...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2528-x

    authors: Vierstra J,Lazar J,Sandstrom R,Halow J,Lee K,Bates D,Diegel M,Dunn D,Neri F,Haugen E,Rynes E,Reynolds A,Nelson J,Johnson A,Frerker M,Buckley M,Kaul R,Meuleman W,Stamatoyannopoulos JA

    更新日期:2020-07-01 00:00:00

  • Scotopic colour vision in nocturnal hawkmoths.

    abstract::Humans are colour-blind at night, and it has been assumed that this is true of all animals. But colour vision is as useful for discriminating objects at night as it is during the day. Here we show, through behavioural experiments, that the nocturnal hawkmoth Deilephila elpenor uses colour vision to discriminate colour...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature01065

    authors: Kelber A,Balkenius A,Warrant EJ

    更新日期:2002-10-31 00:00:00

  • Ultralow-threshold Raman laser using a spherical dielectric microcavity.

    abstract::The ability to confine and store optical energy in small volumes has implications in fields ranging from cavity quantum electrodynamics to photonics. Of all cavity geometries, micrometre-sized dielectric spherical resonators are the best in terms of their ability to store energy for long periods of time within small v...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/415621a

    authors: Spillane SM,Kippenberg TJ,Vahala KJ

    更新日期:2002-02-07 00:00:00

  • Author Correction: SLC19A1 transports immunoreactive cyclic dinucleotides.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41586-020-2064-8

    authors: Luteijn RD,Zaver SA,Gowen BG,Wyman SK,Garelis NE,Onia L,McWhirter SM,Katibah GE,Corn JE,Woodward JJ,Raulet DH

    更新日期:2020-03-01 00:00:00

  • Enhanced ferroelectricity in ultrathin films grown directly on silicon.

    abstract::Ultrathin ferroelectric materials could potentially enable low-power perovskite ferroelectric tetragonality logic and nonvolatile memories1,2. As ferroelectric materials are made thinner, however, the ferroelectricity is usually suppressed. Size effects in ferroelectrics have been thoroughly investigated in perovskite...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-020-2208-x

    authors: Cheema SS,Kwon D,Shanker N,Dos Reis R,Hsu SL,Xiao J,Zhang H,Wagner R,Datar A,McCarter MR,Serrao CR,Yadav AK,Karbasian G,Hsu CH,Tan AJ,Wang LC,Thakare V,Zhang X,Mehta A,Karapetrova E,Chopdekar RV,Shafer P,Arenh

    更新日期:2020-04-01 00:00:00

  • The three-dimensional structure of foot-and-mouth disease virus at 2.9 A resolution.

    abstract::The structure of foot-and-mouth disease virus has been determined at close to atomic resolution by X-ray diffraction without experimental phase information. The virus shows similarities with other picornaviruses but also several unique features. The canyon or pit found in other picornaviruses is absent; this has impor...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/337709a0

    authors: Acharya R,Fry E,Stuart D,Fox G,Rowlands D,Brown F

    更新日期:1989-02-23 00:00:00

  • Local-feature assembling in visual pattern recognition and generalization in honeybees.

    abstract::Generalization is a cognitive ability that allows similar stimuli along a given dimension to be treated as equivalents. Insects exhibit high levels of visual generalization. Honeybees trained to recognize complex visual stimuli on the basis of a single feature generalize their choice to novel stimuli sharing that comm...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02594

    authors: Stach S,Benard J,Giurfa M

    更新日期:2004-06-17 00:00:00

  • Inhibin is absent from azoospermic semen of infertile men.

    abstract::There is ample evidence that the secretion of follicle stimulating hormone (FSH) by the pituitary gland is regulated by a nonsteroidal hormone of gonadal origin, termed inhibin. In several species, testicular extracts, gonadal lymph and seminal plasma have been shown to contain proteins which inhibit FSH release; lack...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/285246a0

    authors: Scott RS,Burger HG

    更新日期:1980-05-22 00:00:00

  • Multiple steps in DNA recognition by restriction endonuclease from E. coli K.

    abstract::The process of DNA recognition by the activated form of the restriction endonuclease from E. coli K involves three enzyme-DNA complexes which can be differentiated experimentally. These are: an initial complex formed at a nonspecific site; a recognition complex involving the host specificity site; and a cleavage compl...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/256556a0

    authors: Yuan R,Bickle TA,Ebbers W,Brack C

    更新日期:1975-08-14 00:00:00

  • Early Pleistocene human occupation at the edge of the boreal zone in northwest Europe.

    abstract::The dispersal of early humans from Africa by 1.75 Myr ago led to a marked expansion of their range, from the island of Flores in the east to the Iberian peninsula in the west. This range encompassed tropical forest, savannah and Mediterranean habitats, but has hitherto not been demonstrated beyond 45 degrees N. Until ...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature09117

    authors: Parfitt SA,Ashton NM,Lewis SG,Abel RL,Coope GR,Field MH,Gale R,Hoare PG,Larkin NR,Lewis MD,Karloukovski V,Maher BA,Peglar SM,Preece RC,Whittaker JE,Stringer CB

    更新日期:2010-07-08 00:00:00

  • Large contribution of natural aerosols to uncertainty in indirect forcing.

    abstract::The effect of anthropogenic aerosols on cloud droplet concentrations and radiative properties is the source of one of the largest uncertainties in the radiative forcing of climate over the industrial period. This uncertainty affects our ability to estimate how sensitive the climate is to greenhouse gas emissions. Here...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature12674

    authors: Carslaw KS,Lee LA,Reddington CL,Pringle KJ,Rap A,Forster PM,Mann GW,Spracklen DV,Woodhouse MT,Regayre LA,Pierce JR

    更新日期:2013-11-07 00:00:00

  • A nucleotide regulatory site for somatostatin inhibition of adenylate cyclase in S49 lymphoma cells.

    abstract::The cyc- variants of S49 lymphoma cells have served as powerful tools for studying the components and mechanisms of hormone-induced adenylate cyclase stimulation, as these cells are deficient in the guanine nucleotide regulatory site (Ns) mediating hormone, guanine nucleotide, cholera toxin and fluoride-induced stimul...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/303177a0

    authors: Jakobs KH,Aktories K,Schultz G

    更新日期:1983-05-12 00:00:00

  • Suppressor effects and cyclic AMP accumulation by the CD29 molecule of CD4+ lymphocytes.

    abstract::Integrins are a superfamily of related molecules whose function, where known, is to mediate adhesion. The so-called very-late-activation antigen (VLA) family includes at least five distinct heterodimers, each composed of a unique alpha-subunit non-covalently associated with a common beta-subunit. Several members of th...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/339152a0

    authors: Groux H,Huet S,Valentin H,Pham D,Bernard A

    更新日期:1989-05-11 00:00:00

  • Transport dynamics in a glutamate transporter homologue.

    abstract::Glutamate transporters are integral membrane proteins that catalyse neurotransmitter uptake from the synaptic cleft into the cytoplasm of glial cells and neurons. Their mechanism of action involves transitions between extracellular (outward)-facing and intracellular (inward)-facing conformations, whereby substrate bin...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12265

    authors: Akyuz N,Altman RB,Blanchard SC,Boudker O

    更新日期:2013-10-03 00:00:00

  • Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry.

    abstract::The annotated genomes of organisms define a 'blueprint' of their possible gene products. Post-genome analyses attempt to confirm and modify the annotation and impose a sense of the spatial, temporal and developmental usage of genetic information by the organism. Here we describe a large-scale, high-accuracy (average d...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature01111

    authors: Lasonder E,Ishihama Y,Andersen JS,Vermunt AM,Pain A,Sauerwein RW,Eling WM,Hall N,Waters AP,Stunnenberg HG,Mann M

    更新日期:2002-10-03 00:00:00

  • Gridlock signalling pathway fashions the first embryonic artery.

    abstract::Arteries and veins are morphologically, functionally and molecularly very different, but how this distinction is established during vasculogenesis is unknown. Here we show, by lineage tracking in zebrafish embryos, that angioblast precursors for the trunk artery and vein are spatially mixed in the lateral posterior me...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35102599

    authors: Zhong TP,Childs S,Leu JP,Fishman MC

    更新日期:2001-11-08 00:00:00

  • Seeing mesoatomic distortions in soft-matter crystals of a double-gyroid block copolymer.

    abstract::Supramolecular soft crystals are periodic structures that are formed by the hierarchical assembly of complex constituents, and occur in a broad variety of 'soft-matter' systems1. Such soft crystals exhibit many of the basic features (such as three-dimensional lattices and space groups) and properties (such as band str...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-1706-1

    authors: Feng X,Burke CJ,Zhuo M,Guo H,Yang K,Reddy A,Prasad I,Ho RM,Avgeropoulos A,Grason GM,Thomas EL

    更新日期:2019-11-01 00:00:00

  • Gene flow maintains a large genetic difference in clutch size at a small spatial scale.

    abstract::Understanding the capacity of natural populations to adapt to their local environment is a central topic in evolutionary biology. Phenotypic differences between populations may have a genetic basis, but showing that they reflect different adaptive optima requires the quantification of both gene flow and selection. Goo...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature03083

    authors: Postma E,van Noordwijk AJ

    更新日期:2005-01-06 00:00:00

  • A stable silicon-based allene analogue with a formally sp-hybridized silicon atom.

    abstract::Carbon chemistry exhibits a rich variety in bonding patterns, with homo- or heteronuclear multiple bonds involving sp-hybridized carbon atoms as found in molecules such as acetylenes, nitriles, allenes and carbon dioxide. Carbon's heavier homologues in group 14 of the periodic table--including silicon, germanium and t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature01380

    authors: Ishida S,Iwamoto T,Kabuto C,Kira M

    更新日期:2003-02-13 00:00:00

  • The community of the self.

    abstract::Good health, which reflects the harmonious integration of molecules, cells, tissues and organs, is dynamically stable: when displaced by disease, compensation and correction are common, even without medical care. Physiology and computational biology now suggest that healthy dynamic stability arises through the combina...

    journal_title:Nature

    pub_type: 杂志文章,评审

    doi:10.1038/nature01260

    authors: Buchman TG

    更新日期:2002-11-14 00:00:00

  • Structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside.

    abstract::ATP, the principal energy currency of the cell, fuels most biosynthetic reactions in the cytoplasm by its hydrolysis into ADP and inorganic phosphate. Because resynthesis of ATP occurs in the mitochondrial matrix, ATP is exported into the cytoplasm while ADP is imported into the matrix. The exchange is accomplished by...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature02056

    authors: Pebay-Peyroula E,Dahout-Gonzalez C,Kahn R,Trézéguet V,Lauquin GJ,Brandolin G

    更新日期:2003-11-06 00:00:00

  • Competing memories of mitogen and p53 signalling control cell-cycle entry.

    abstract::Regulation of cell proliferation is necessary for immune responses, tissue repair, and upkeep of organ function to maintain human health. When proliferating cells complete mitosis, a fraction of newly born daughter cells immediately enter the next cell cycle, while the remaining cells in the same population exit to a ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature23880

    authors: Yang HW,Chung M,Kudo T,Meyer T

    更新日期:2017-09-21 00:00:00