An inverse PCR screen for the detection of P element insertions in cloned genomic intervals in Drosophila melanogaster.

Abstract:

:We developed a screening approach that utilizes an inverse polymerase chain reaction (PCR) to detect P element insertions in or near previously cloned genes in Drosophila melanogaster. We used this approach in a large scale genetic screen in which P elements were mobilized from sites on the X chromosome to new autosomal locations. Mutagenized flies were combined in pools, and our screening approach was used to generate probes corresponding to the sequences flanking each site of insertion. These probes then were used for hybridization to cloned genomic intervals, allowing individuals carrying insertions in them to be detected. We used the same approach to perform repeated rounds of sib-selection to generate stable insertion lines. We screened 16,100 insert bearing individuals and recovered 11 insertions in five intervals containing genes encoding members of the kinesin superfamily in Drosophila melanogaster. In addition, we recovered an insertion in the region including the Larval Serum Protein-2 gene. Examination by Southern hybridization confirms that the lines we recovered represent genuine insertions in the corresponding genomic intervals. Our data indicates that this approach will be very efficient both for P element mutagenesis of new genomic regions and for detection and recovery of "local" P element transposition events. In addition, our data constitutes a survey of preferred P element insertion sites in the Drosophila genome and suggests that insertion sites that are mutable at a rate of approximately 10(-4) are distributed every 40-50 kb.

journal_name

Genetics

journal_title

Genetics

authors

Dalby B,Pereira AJ,Goldstein LS

subject

Has Abstract

pub_date

1995-02-01 00:00:00

pages

757-66

issue

2

eissn

0016-6731

issn

1943-2631

journal_volume

139

pub_type

杂志文章

相关文献

GENETICS文献大全
  • The hitchhiking effect of an autosomal meiotic drive gene.

    abstract::Transmission-ratio distortion is a departure from a 1:1 segregation of alleles in the gametes of a heterozygous individual. The so-called driving allele is strongly selected regardless of its effect on the fitness of the carrying individual. It may then have an important impact on neutral polymorphism due to the genet...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.105.052977

    authors: Chevin LM,Hospital F

    更新日期:2006-07-01 00:00:00

  • Genetic requirements for the function of the archaeal virus SSV1 in Sulfolobus solfataricus: construction and testing of viral shuttle vectors.

    abstract::Directed open reading frame (ORF) disruption and a serial selection technique in Escherichia coli and the extremely thermophilic archaeon Sulfolobus solfataricus allowed the identification of otherwise cryptic crucial and noncrucial viral open reading frames in the genome of the archaeal virus SSV1. It showed that the...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Stedman KM,Schleper C,Rumpf E,Zillig W

    更新日期:1999-08-01 00:00:00

  • Interallelic complementation at the Drosophila melanogaster gastrulation defective locus defines discrete functional domains of the protein.

    abstract::The gastrulation defective (gd) locus encodes a novel serine protease that is involved in specifying the dorsal-ventral axis during embryonic development. Mutant alleles of gd have been classified into three complementation groups, two of which exhibit strong interallelic (intragenic) complementation. To understand th...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Ponomareff G,Giordano H,DeLotto Y,DeLotto R

    更新日期:2001-10-01 00:00:00

  • A heritable structural alteration of the yeast mitochondrion.

    abstract::Prions have revived interest in hereditary change that is due to change in cellular structure. How pervasive is structural inheritance and what are its mechanisms? Described here is the initial characterization of [Leu(P)], a heritable structural change of the mitochondrion of Saccharomyces cerevisiae that often but n...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Lockshon D

    更新日期:2002-08-01 00:00:00

  • Genetic variability for pathogenicity, isozyme, ribosomal DNA and colony color variants in populations of Rhynchosporium secalis.

    abstract::Samples of Rhynchosporium secalis were collected from two experimental barley populations known to carry a diverse array of alleles for resistance to this fungal pathogen. Classification of 163 isolates for four putative isozyme systems, a colony color dimorphism and 20 ribosomal DNA restriction fragment length varian...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: McDermott JM,McDonald BA,Allard RW,Webster RK

    更新日期:1989-07-01 00:00:00

  • Linkage disequilibrium in growing and stable populations.

    abstract::Nonrandom associations between alleles at different loci can be tested for using Fisher's exact test. Extensive simulations show that there is a substantial probability of obtaining significant nonrandom associations between closely or completely linked polymorphic neutral loci in a population of constant size at equi...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Slatkin M

    更新日期:1994-05-01 00:00:00

  • Drosophila-host genetic control of susceptibility to Drosophila C virus.

    abstract::Interactions between Drosophila C virus (DCV) and its natural host, Drosophila melanogaster, were investigated using 15 geographical population samples infected by intraabdominal inoculation. These strains derived from natural populations of D. melanogaster differed in susceptibility to the DCVc. One strain was "parti...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Thomas-Orillard M,Jeune B,Cusset G

    更新日期:1995-08-01 00:00:00

  • Genetic linkage maps of the red flour beetle, Tribolium castaneum, based on bacterial artificial chromosomes and expressed sequence tags.

    abstract::A genetic linkage map was constructed in a backcross family of the red flour beetle, Tribolium castaneum, based largely on sequences from bacterial artificial chromosome (BAC) ends and untranslated regions from random cDNA's. In most cases, dimorphisms were detected using heteroduplex or single-strand conformational p...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.104.032227

    authors: Lorenzen MD,Doyungan Z,Savard J,Snow K,Crumly LR,Shippy TD,Stuart JJ,Brown SJ,Beeman RW

    更新日期:2005-06-01 00:00:00

  • Population structure of morphological traits in Clarkia dudleyana. I. Comparison of FST between allozymes and morphological traits.

    abstract::Studies of genetic variation at allozyme loci, assumed to be selectively neutral, have provided valuable insights into the genetic structure of numerous populations. The degree to which population structure of allozyme variation reflects that of quantitative traits, however, is not well resolved. Here, we compare esti...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Podolsky RH,Holtsford TP

    更新日期:1995-06-01 00:00:00

  • Stochastic demography and the neutral substitution rate in class-structured populations.

    abstract::The neutral rate of allelic substitution is analyzed for a class-structured population subject to a stationary stochastic demographic process. The substitution rate is shown to be generally equal to the effective mutation rate, and under overlapping generations it can be expressed as the effective mutation rate in new...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.163345

    authors: Lehmann L

    更新日期:2014-05-01 00:00:00

  • Bayesian mapping of genomewide interacting quantitative trait loci for ordinal traits.

    abstract::Development of statistical methods and software for mapping interacting QTL has been the focus of much recent research. We previously developed a Bayesian model selection framework, based on the composite model space approach, for mapping multiple epistatic QTL affecting continuous traits. In this study we extend the ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.107.071142

    authors: Yi N,Banerjee S,Pomp D,Yandell BS

    更新日期:2007-07-01 00:00:00

  • The genic nature of gamete eliminator in rice.

    abstract::The two cultivated rice species, Oryza sativa and Oryza glaberrima, are morphologically alike but are reproductively isolated from each other by hybrid sterility. The hybrid is male sterile but partially female fertile. Backcross experiments were conducted to introduce an alien factor controlling hybrid sterility from...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Sano Y

    更新日期:1990-05-01 00:00:00

  • Genetic instability within monotonous runs of CpG sequences in Escherichia coli.

    abstract::Genetic information can be altered by base substitutions, frameshift mutations, and addition or deletion of nucleotides. Deletions represent an important class of genetic aberration occurring at DNA sequences where it is often possible to predict the existence of intermediates of mutation. Instability within tracts of...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Bichara M,Schumacher S,Fuchs RP

    更新日期:1995-07-01 00:00:00

  • Lack of spontaneous sister chromatid exchanges in somatic cells of Drosophila melanogaster.

    abstract::Neural ganglia of wild type third-instar larvae of Drosophila melanogaster were incubated for 13 hours at various concentrations of BUdR (1, 3, 9, 27 micrograms/ml). Metaphases were collected with colchicine, stained with Hoechst 33258, and scored under a fluorescence microscope. Metaphases in which the sister chromat...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Gatti M,Santini G,Pimpinelli S,Olivieri G

    更新日期:1979-02-01 00:00:00

  • Two genetic elements regulate murine beta-glucuronidase synthesis following transcript accumulation.

    abstract::Mutant alleles of two genetic regulatory elements, which underlie a three- to sixfold reduction in beta-glucuronidase (GUS) activity levels, distinguish mice of the H haplotype from those of the other two common GUS haplotypes, A and B. Both elements are tightly linked to the GUS structural gene over which they exert ...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Wawrzyniak CJ,Meredith SA,Ganschow RE

    更新日期:1989-01-01 00:00:00

  • A Tn10-lacZ-kanR-URA3 gene fusion transposon for insertion mutagenesis and fusion analysis of yeast and bacterial genes.

    abstract::We describe here a new variant of transposon Tn10 especially adapted for transposon analysis of cloned yeast genes; it can equally well be used for analysis of prokaryotic genes. We have applied this element to analysis of the LEU2, RAD50, and CDC48 genes of Saccharomyces cerevisiae. This transposon, nicknamed mini-Tn...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Huisman O,Raymond W,Froehlich KU,Errada P,Kleckner N,Botstein D,Hoyt MA

    更新日期:1987-06-01 00:00:00

  • Amylase Variation in the Salt Marsh Amphipod, GAMMARUS PALUSTRIS.

    abstract::There are two common alleles at the Amylase-2 locus in populations of Gammarus palustris, the salt marsh amphipod. Intensive sampling of individuals from two localities at Jamaica Bay revealed a consistent pattern of heterozygote deficiency.-Five possible sources of heterozygote deficiency were examined in this study....

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Borowsky R,Borowsky B,Milani H,Greenberg P

    更新日期:1985-10-01 00:00:00

  • The exonuclease activity of the yeast mitochondrial DNA polymerase γ suppresses mitochondrial DNA deletions between short direct repeats in Saccharomyces cerevisiae.

    abstract::The importance of mitochondrial DNA (mtDNA) deletions in the progeroid phenotype of exonuclease-deficient DNA polymerase γ mice has been intensely debated. We show that disruption of Mip1 exonuclease activity increases mtDNA deletions 160-fold, whereas disease-associated polymerase variants were mostly unaffected, sug...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.150920

    authors: Stumpf JD,Copeland WC

    更新日期:2013-06-01 00:00:00

  • Repeated Duplication of Argonaute2 Is Associated with Strong Selection and Testis Specialization in Drosophila.

    abstract::Argonaute2 (Ago2) is a rapidly evolving nuclease in the Drosophila melanogaster RNA interference (RNAi) pathway that targets viruses and transposable elements in somatic tissues. Here we reconstruct the history of Ago2 duplications across the D. obscura group and use patterns of gene expression to infer new functional...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.116.192336

    authors: Lewis SH,Webster CL,Salmela H,Obbard DJ

    更新日期:2016-10-01 00:00:00

  • The sex-ratio trait in Drosophila simulans: genetic analysis of distortion and suppression.

    abstract::The sex-ratio trait described in several Drosophila species is a type of naturally occurring X-linked meiotic drive that causes males bearing a sex-ratio X chromosome to produce progenies with a large excess of females. We have previously reported the occurrence of sex-ratio X chromosomes in Drosophila simulans. In th...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Cazemajor M,Landré C,Montchamp-Moreau C

    更新日期:1997-10-01 00:00:00

  • Genetic and physical mapping of telomeres in the rice blast fungus, Magnaporthe grisea.

    abstract::Telomeric restriction fragments were genetically mapped to a previously described linkage map of Magnaporthe grisea, using RFLPs identified by a synthetic probe. (TTAGGG)3. Frequent rearrangement of telomeric sequences was observed in progeny isolates creating a potential for misinterpretation of data. Therefore a con...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Farman ML,Leong SA

    更新日期:1995-06-01 00:00:00

  • Molecular genetic analysis of Chd3 and polytene chromosome region 76B-D in Drosophila melanogaster.

    abstract::The Drosophila melanogaster Chd3 gene encodes a member of the CHD group of SNF2/RAD54 ATPases. CHD proteins are conserved from yeast to man and many are subunits of chromatin-remodeling complexes that facilitate transcription. Drosophila CHD3 proteins are not found in protein complexes, but as monomers that remodel ch...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.110.115121

    authors: Cooper MT,Conant AW,Kennison JA

    更新日期:2010-07-01 00:00:00

  • Restoration of topoisomerase 2 function by complementation of defective monomers in Drosophila.

    abstract::Type II topoisomerases are essential ATP-dependent homodimeric enzymes required for transcription, replication, and chromosome segregation. These proteins alter DNA topology by generating transient enzyme-linked double-strand breaks for passage of one DNA strand through another. The central role of type II topoisomera...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.112.144006

    authors: Hohl AM,Thompson M,Soshnev AA,Wu J,Morris J,Hsieh TS,Wu CT,Geyer PK

    更新日期:2012-11-01 00:00:00

  • The Role of Maternal HP1a in Early Drosophila Embryogenesis via Regulation of Maternal Transcript Production.

    abstract::Heterochromatin protein 1a (HP1a) is a highly conserved and versatile epigenetic factor that can both silence and activate transcription. However, the function of HP1a in development has been underinvestigated. Here, we report the role of maternal HP1a in producing maternal transcripts that drive early Drosophila embr...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.118.301704

    authors: Park AR,Liu N,Neuenkirchen N,Guo Q,Lin H

    更新日期:2019-01-01 00:00:00

  • Soft selective sweeps in complex demographic scenarios.

    abstract::Adaptation from de novo mutation can produce so-called soft selective sweeps, where adaptive alleles of independent mutational origin sweep through the population at the same time. Population genetic theory predicts that such soft sweeps should be likely if the product of the population size and the mutation rate towa...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.114.165571

    authors: Wilson BA,Petrov DA,Messer PW

    更新日期:2014-10-01 00:00:00

  • Nuclear mutations in the petite-negative yeast Schizosaccharomyces pombe allow growth of cells lacking mitochondrial DNA.

    abstract::The fission yeast Schizosaccharomyces pombe has never been found to give rise to viable cells totally lacking mitochondrial DNA (rho(o)). This paper describes the isolation of rho(o) strains of S. pombe by very long term incubation of cells in liquid medium containing glucose, potassium acetate and ethidium bromide. O...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Haffter P,Fox TD

    更新日期:1992-06-01 00:00:00

  • The role of the ameiotic1 gene in the initiation of meiosis and in subsequent meiotic events in maize.

    abstract::Understanding the initiation of meiosis and the relationship of this event with other key cytogenetic processes are major goals in studying the genetic control of meiosis in higher plants. Our genetic and structural analysis of two mutant alleles of the ameiotic1 gene (am1 and am1-praI) suggest that this locus plays a...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Golubovskaya I,Grebennikova ZK,Avalkina NA,Sheridan WF

    更新日期:1993-12-01 00:00:00

  • Targeted Gene Disruption by Ectopic Induction of DNA Elimination in Tetrahymena.

    abstract::Tetrahymena is a useful eukaryotic model for biochemistry and molecular cell biology studies. We previously demonstrated that targeted ectopic DNA elimination, also called co-Deletion (coDel), can be induced by the introduction of an internal eliminated sequence (IES)-target DNA chimeric construct. In this study, we d...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.115.178525

    authors: Hayashi A,Mochizuki K

    更新日期:2015-09-01 00:00:00

  • Approximate thresholds of interval mapping tests for QTL detection.

    abstract::A general method is proposed for calculating approximate thresholds of interval mapping tests for quantitative trait loci (QTL) detection. Simulation results show that this method, when applied to backcross and F2 populations, gives good approximations and is useful for any situation. Programs which calculate these th...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:

    authors: Rebaï A,Goffinet B,Mangin B

    更新日期:1994-09-01 00:00:00

  • The evolution and consequences of sex-specific reproductive variance.

    abstract::Natural selection favors alleles that increase the number of offspring produced by their carriers. But in a world that is inherently uncertain within generations, selection also favors alleles that reduce the variance in the number of offspring produced. If previous studies have established this principle, they have l...

    journal_title:Genetics

    pub_type: 杂志文章

    doi:10.1534/genetics.113.156067

    authors: Mullon C,Reuter M,Lehmann L

    更新日期:2014-01-01 00:00:00