Nonenzymatic sequence-specific cleavage of single-stranded DNA.

Abstract:

:Ethylenediaminetetraacetic acid and diethylenetriaminepentaacetic acid have been attached covalently to the 5' terminus of the deoxynucleotide sequence C-A-C-A-A-T-T-C-C-A-C-A-C-A-A-C (16-mer) via an ethylenediamine linker. In the presence of Fe2+ and dithiothreitol, these reagents bring about the hybridization-dependent cleavage of the sequence T-C-G-T-A-T-G-T-T-G-T-G-T-G-G-A-A-T-T-G-T-G-A-G-C-G-G-A-T-A-A-C-A-A-T-T- T (37-mer), a sequence that contains an internal subsequence complementary to the 16-mer. The principal cleavage sites on the 37-mer are about four residues on each side of the terminal phosphate group of the 16-mer.

authors

Chu BC,Orgel LE

doi

10.1073/pnas.82.4.963

subject

Has Abstract

pub_date

1985-02-01 00:00:00

pages

963-7

issue

4

eissn

0027-8424

issn

1091-6490

journal_volume

82

pub_type

杂志文章
  • A neural substrate in the human hippocampus for linking successive events.

    abstract::Memory formation requires the placement of experienced events in the same order in which they appeared. A large body of evidence from human studies indicates that structures in the medial temporal lobe are critically involved in forming and maintaining such memories, and complementing evidence from lesion and electrop...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0910834107

    authors: Paz R,Gelbard-Sagiv H,Mukamel R,Harel M,Malach R,Fried I

    更新日期:2010-03-30 00:00:00

  • Expression, regulation, and chromosomal localization of the Max gene.

    abstract::The Max gene encodes a protein that interacts specifically with the Myc protein to form a heterodimer with high affinity for the specific cognate DNA binding site of Myc. Here we examine the expression of Max RNA in comparison to Myc RNA during cell growth and differentiation. Two species of RNA, a major 2.0- and a mi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.89.7.3111

    authors: Wagner AJ,Le Beau MM,Diaz MO,Hay N

    更新日期:1992-04-01 00:00:00

  • CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention.

    abstract::The DNA-binding protein CCCTC-binding factor (CTCF) and the cohesin complex function together to shape chromatin architecture in mammalian cells, but the molecular details of this process remain unclear. Here, we demonstrate that a 79-aa region within the CTCF N terminus is essential for cohesin positioning at CTCF bi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1911708117

    authors: Pugacheva EM,Kubo N,Loukinov D,Tajmul M,Kang S,Kovalchuk AL,Strunnikov AV,Zentner GE,Ren B,Lobanenkov VV

    更新日期:2020-01-28 00:00:00

  • Photosensitized destruction of human bladder carcinoma cells treated with chlorin e6-conjugated microspheres.

    abstract::A photosensitizer conjugate, chlorin e6 (Ce6) covalently bound to 1-micron-diameter polystyrene microspheres, has been investigated in the photodynamic destruction of MGH-U1 human bladder carcinoma cells in vitro. The microspheres were taken up avidly by the carcinoma cells; confocal laser scanning fluorescence micros...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.4.1580

    authors: Bachor R,Shea CR,Gillies R,Hasan T

    更新日期:1991-02-15 00:00:00

  • Developmental loss of miniature N-methyl-D-aspartate receptor currents in NR2A knockout mice.

    abstract::The N-methyl-d-aspartate (NMDA) glutamate receptor (NMDAR), long implicated in developmental plasticity, shows decay time kinetics that shorten postnatally as NR2A subunits are added to the receptor. Neither the mechanism nor immediate effect of this change is known. We studied developing NMDAR currents by using visua...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0335786100

    authors: Townsend M,Yoshii A,Mishina M,Constantine-Paton M

    更新日期:2003-02-04 00:00:00

  • The lost origin of chemical ecology in the late 19th century.

    abstract::The origin of plant chemical ecology generally dates to the late 1950s, when evolutionary entomologists recognized the essential role of plant secondary metabolites in plant-insect interactions and suggested that plant chemical diversity evolved under the selection pressure of herbivory. However, similar ideas had alr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 传,历史文章,杂志文章

    doi:10.1073/pnas.0709231105

    authors: Hartmann T

    更新日期:2008-03-25 00:00:00

  • Expression and crystallization of the complex of HLA-DR2 (DRA, DRB1*1501) and an immunodominant peptide of human myelin basic protein.

    abstract::HLA-DR2 is associated with susceptibility to multiple sclerosis (MS). A peptide from human myelin basic protein (MBP, residues 85-99) was previously found to bind to purified HLA-DR2 (DRA, DRB1*1501) and to be recognized by human MBP-specific T cell clones. Soluble HLA-DR2 was expressed in the baculovirus system by re...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.95.20.11828

    authors: Gauthier L,Smith KJ,Pyrdol J,Kalandadze A,Strominger JL,Wiley DC,Wucherpfennig KW

    更新日期:1998-09-29 00:00:00

  • Tissue-specific dynamic codon redefinition in Drosophila.

    abstract::Translational stop codon readthrough occurs in organisms ranging from viruses to mammals and is especially prevalent in decoding Drosophila and viral mRNAs. Recoding of UGA, UAG, or UAA to specify an amino acid allows a proportion of the protein encoded by a single gene to be C-terminally extended. The extended produc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2012793118

    authors: Hudson AM,Szabo NL,Loughran G,Wills NM,Atkins JF,Cooley L

    更新日期:2021-02-02 00:00:00

  • Green spaces and cognitive development in primary schoolchildren.

    abstract::Exposure to green space has been associated with better physical and mental health. Although this exposure could also influence cognitive development in children, available epidemiological evidence on such an impact is scarce. This study aimed to assess the association between exposure to green space and measures of c...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1503402112

    authors: Dadvand P,Nieuwenhuijsen MJ,Esnaola M,Forns J,Basagaña X,Alvarez-Pedrerol M,Rivas I,López-Vicente M,De Castro Pascual M,Su J,Jerrett M,Querol X,Sunyer J

    更新日期:2015-06-30 00:00:00

  • Evidence for an ancient adaptive episode of convergent molecular evolution.

    abstract::Documented cases of convergent molecular evolution due to selection are fairly unusual, and examples to date have involved only a few amino acid positions. However, because convergence mimics shared ancestry and is not accommodated by current phylogenetic methods, it can strongly mislead phylogenetic inference when it...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0900233106

    authors: Castoe TA,de Koning AP,Kim HM,Gu W,Noonan BP,Naylor G,Jiang ZJ,Parkinson CL,Pollock DD

    更新日期:2009-06-02 00:00:00

  • Subsystem organization of axonal connections within and between the right and left cerebral cortex and cerebral nuclei (endbrain).

    abstract::The endbrain (telencephalon) is at the rostral end of the central nervous system and is primarily responsible for supporting cognition and affect. Structurally, it consists of right and left cerebral hemispheres, each parceled into multiple cortical and nuclear gray matter regions. The global network organization of a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1807255115

    authors: Swanson LW,Hahn JD,Jeub LGS,Fortunato S,Sporns O

    更新日期:2018-07-17 00:00:00

  • Gene expression patterns define novel roles for E47 in cell cycle progression, cytokine-mediated signaling, and T lineage development.

    abstract::In maturing T lineage cells, the helix-loop-helix protein E47 has been shown to enforce a critical proliferation and developmental checkpoint commonly referred to as beta selection. To examine how E47 regulates cellular expansion and developmental progression, we have used an E2A-deficient lymphoma cell line and DNA m...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0603728103

    authors: Schwartz R,Engel I,Fallahi-Sichani M,Petrie HT,Murre C

    更新日期:2006-06-27 00:00:00

  • ELAVL1 regulates alternative splicing of eIF4E transporter to promote postnatal angiogenesis.

    abstract::Posttranscriptional RNA regulation is important in determining the plasticity of cellular phenotypes. However, mechanisms of how RNA binding proteins (RBPs) influence cellular behavior are poorly understood. We show here that the RBP embryonic lethal abnormal vision like 1 (ELAVL1, also know as HuR) regulates the alte...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1412172111

    authors: Chang SH,Elemento O,Zhang J,Zhuang ZW,Simons M,Hla T

    更新日期:2014-12-23 00:00:00

  • Phyllotreta striolata flea beetles use host plant defense compounds to create their own glucosinolate-myrosinase system.

    abstract::The ability of a specialized herbivore to overcome the chemical defense of a particular plant taxon not only makes it accessible as a food source but may also provide metabolites to be exploited for communication or chemical defense. Phyllotreta flea beetles are adapted to crucifer plants (Brassicales) that are defend...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1321781111

    authors: Beran F,Pauchet Y,Kunert G,Reichelt M,Wielsch N,Vogel H,Reinecke A,Svatoš A,Mewis I,Schmid D,Ramasamy S,Ulrichs C,Hansson BS,Gershenzon J,Heckel DG

    更新日期:2014-05-20 00:00:00

  • Calcitonin gene-related peptide enhances the rate of desensitization of the nicotinic acetylcholine receptor in cultured mouse muscle cells.

    abstract::Calcitonin gene-related peptide (CGRP) is a neuropeptide that coexists with acetylcholine in spinal cord motoneurons. The effects of CGRP on the functional properties of the nicotinic acetylcholine receptor (AcChoR) were examined by electrophysiological methods. Using the whole-cell patch-clamp technique and a mouse c...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.15.5728

    authors: Mulle C,Benoit P,Pinset C,Roa M,Changeux JP

    更新日期:1988-08-01 00:00:00

  • Dendrites of cerebellar granule cells correctly recognize their target axons for synaptogenesis in vitro.

    abstract::Neural circuits are generated by precisely ordered synaptic connections among neurons, and this process is thought to rely on the ability of neurons to recognize specific partners. However, it is also known that neurons promiscuously form synapses with nonspecific partners, in particular when cultured in vitro, causin...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0906653106

    authors: Ito S,Takeichi M

    更新日期:2009-08-04 00:00:00

  • Replication-dependent early meiotic requirement for Spo11 and Rad50.

    abstract::Spo11 and the Rad50-Mre11 complex have been indirectly implicated in processes associated with DNA replication. These proteins also have been shown to have early meiotic roles essential for the formation of a programmed DNA double-strand break known in Saccharomyces cerevisiae to initiate meiotic recombination. In bot...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.190346097

    authors: Merino ST,Cummings WJ,Acharya SN,Zolan ME

    更新日期:2000-09-12 00:00:00

  • Cells expressing the DG42 gene from early Xenopus embryos synthesize hyaluronan.

    abstract::DG42 is one of the main mRNAs expressed during gastrulation in embryos of Xenopus laevis. Here we demonstrate that cells expressing this mRNA synthesize hyaluronan. The cloned DG42 cDNA was expressed in rabbit kidney (RK13) and human osteosarcoma (tk-) cells using a vaccinia virus system. Lysates prepared from infecte...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.10.4543

    authors: Meyer MF,Kreil G

    更新日期:1996-05-14 00:00:00

  • Adaptation to a new environment allows cooperators to purge cheaters stochastically.

    abstract::Cooperation via production of common goods is found in diverse life forms ranging from viruses to social animals. However, natural selection predicts a "tragedy of the commons": Cheaters, benefiting from without producing costly common goods, are more fit than cooperators and should destroy cooperation. In an attempt ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1210190109

    authors: Waite AJ,Shou W

    更新日期:2012-11-20 00:00:00

  • Hydrophobicity, hydrophilicity, and the radial and orientational distributions of residues in native proteins.

    abstract::The radial distributions of the Calpha and side-chain atoms in a sample of 13 native proteins have been examined. It is found that there are substantial differences in behavior between different atoms of the same amino acid. In particular, the Calpha atoms of polar residues show no particular preference for being far ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.74.12.5248

    authors: Rackovsky S,Scheraga HA

    更新日期:1977-12-01 00:00:00

  • Inhibition of glycolate and D-lactate metabolism in a Chlamydomonas reinhardtii mutant deficient in mitochondrial respiration.

    abstract::The possibility that glycolate oxidation in unicellular green algae is linked to mitochondrial electron transport, rather than to peroxisomal metabolism as in higher plants and animals, was studied in a mutant of Chlamydomonas reinhardtii (dk97) deficient in cytochrome oxidase. This mutant had normal rates of dark res...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.6.1555

    authors: Husic DW,Tolbert NE

    更新日期:1987-03-01 00:00:00

  • Absence of serum growth hormone binding protein in patients with growth hormone receptor deficiency (Laron dwarfism).

    abstract::It has recently been recognized that human serum contains a protein that specifically binds human growth hormone (hGH). This protein has the same restricted specificity for hGH as the membrane-bound GH receptor. To determine whether the GH-binding protein is a derivative of, or otherwise related to, the GH receptor, w...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.13.4636

    authors: Daughaday WH,Trivedi B

    更新日期:1987-07-01 00:00:00

  • Active barnase variants with completely random hydrophobic cores.

    abstract::The central structural feature of natural proteins is a tightly packed and highly ordered hydrophobic core. If some measure of exquisite, native-like core packing is necessary for enzymatic function, this would constitute a significant obstacle to the development of novel enzymes, either by design or by natural or exp...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.11.5590

    authors: Axe DD,Foster NW,Fersht AR

    更新日期:1996-05-28 00:00:00

  • A ubiquitous protein is the source of naturally occurring peptides that are recognized by a CD8+ T-cell clone.

    abstract::We previously isolated from mouse spleen an octapeptide (LSPFPFDL) that in association with the class I major histocompatibility complex protein Ld is recognized by the antigen-specific receptor of an alloreactive CD8+ T-cell clone (2C). Guided by an assay dependent upon the same 2C T-cell receptor, we have now isolat...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.23.11272

    authors: Udaka K,Tsomides TJ,Walden P,Fukusen N,Eisen HN

    更新日期:1993-12-01 00:00:00

  • Crystal structure of elongation factor P from Thermus thermophilus HB8.

    abstract::Translation elongation factor P (EF-P) stimulates ribosomal peptidyltransferase activity. EF-P is conserved in bacteria and is essential for cell viability. Eukarya and Archaea have an EF-P homologue, eukaryotic initiation factor 5A (eIF-5A). In the present study, we determined the crystal structure of EF-P from Therm...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0308667101

    authors: Hanawa-Suetsugu K,Sekine S,Sakai H,Hori-Takemoto C,Terada T,Unzai S,Tame JR,Kuramitsu S,Shirouzu M,Yokoyama S

    更新日期:2004-06-29 00:00:00

  • Src tyrosine kinase phosphorylation of nuclear receptor HNF4α correlates with isoform-specific loss of HNF4α in human colon cancer.

    abstract::Src tyrosine kinase has long been implicated in colon cancer but much remains to be learned about its substrates. The nuclear receptor hepatocyte nuclear factor 4α (HNF4α) has just recently been implicated in colon cancer but its role is poorly defined. Here we show that c-Src phosphorylates human HNF4α on three tyros...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1106799109

    authors: Chellappa K,Jankova L,Schnabl JM,Pan S,Brelivet Y,Fung CL,Chan C,Dent OF,Clarke SJ,Robertson GR,Sladek FM

    更新日期:2012-02-14 00:00:00

  • Transmembrane segment enhanced labeling as a tool for the backbone assignment of alpha-helical membrane proteins.

    abstract::Recent advances in cell-free expression protocols have opened a new avenue toward high-resolution structural investigations of membrane proteins by x-ray crystallography and NMR spectroscopy. One of the biggest challenges for liquid-state NMR-based structural investigations of membrane proteins is the significant peak...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0710843105

    authors: Reckel S,Sobhanifar S,Schneider B,Junge F,Schwarz D,Durst F,Löhr F,Güntert P,Bernhard F,Dötsch V

    更新日期:2008-06-17 00:00:00

  • Transport of phosphocholine in higher plant cells: 31P nuclear magnetic resonance studies.

    abstract::Phosphocholine (PC) is an abundant primary form of organic phosphate that is transported in plant xylem sap. Addition of PC to the perfusate of compressed Pi-starved sycamore cells monitored by 31P NMR spectroscopy resulted in an accumulation of PC and all the other phosphate esters in the cytoplasmic compartment. Add...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.11.4280

    authors: Gout E,Bligny R,Roby C,Douce R

    更新日期:1990-06-01 00:00:00

  • Mapping of the C5a receptor signal transduction network in human neutrophils.

    abstract::Human neutrophils respond to chemoattractants, resulting in their accumulation at an inflammatory site. Chemoattractants such as the C5a peptide, derived from the C5 complement factor, bind to inhibitory guanine nucleotide binding protein (Gi)-coupled seven membrane-spanning receptors expressed in neutrophils. C5a rec...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.91.19.9190

    authors: Buhl AM,Avdi N,Worthen GS,Johnson GL

    更新日期:1994-09-13 00:00:00

  • A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis.

    abstract::Seed dormancy is a trait of considerable adaptive significance because it maximizes seedling survival by preventing premature germination under unfavorable conditions. Understanding how seeds break dormancy and initiate growth is also of great agricultural and biotechnological interest. Abscisic acid (ABA) plays prima...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.081594298

    authors: Lopez-Molina L,Mongrand S,Chua NH

    更新日期:2001-04-10 00:00:00