Inositol-requiring enzyme-1 regulates phosphoinositide signaling lipids and macrophage growth.

Abstract:

:The ER-bound kinase/endoribonuclease (RNase), inositol-requiring enzyme-1 (IRE1), regulates the phylogenetically most conserved arm of the unfolded protein response (UPR). However, the complex biology and pathology regulated by mammalian IRE1 cannot be fully explained by IRE1's one known, specific RNA target, X box-binding protein-1 (XBP1) or the RNA substrates of IRE1-dependent RNA degradation (RIDD) activity. Investigating other specific substrates of IRE1 kinase and RNase activities may illuminate how it performs these diverse functions in mammalian cells. We report that macrophage IRE1 plays an unprecedented role in regulating phosphatidylinositide-derived signaling lipid metabolites and has profound impact on the downstream signaling mediated by the mammalian target of rapamycin (mTOR). This cross-talk between UPR and mTOR pathways occurs through the unconventional maturation of microRNA (miR) 2137 by IRE1's RNase activity. Furthermore, phosphatidylinositol (3,4,5) phosphate (PI(3,4,5)P3 ) 5-phosphatase-2 (INPPL1) is a direct target of miR-2137, which controls PI(3,4,5)P3 levels in macrophages. The modulation of cellular PI(3,4,5)P3 /PIP2 ratio and anabolic mTOR signaling by the IRE1-induced miR-2137 demonstrates how the ER can provide a critical input into cell growth decisions.

journal_name

EMBO Rep

journal_title

EMBO reports

authors

Hamid SM,Citir M,Terzi EM,Cimen I,Yildirim Z,Dogan AE,Kocaturk B,Onat UI,Arditi M,Weber C,Traynor-Kaplan A,Schultz C,Erbay E

doi

10.15252/embr.202051462

subject

Has Abstract

pub_date

2020-11-02 00:00:00

pages

e51462

eissn

1469-221X

issn

1469-3178

pub_type

杂志文章
  • COP9 signalosome controls the Carma1-Bcl10-Malt1 complex upon T-cell stimulation.

    abstract::The Carma1-Bcl10-Malt1 (CBM) complex connects T-cell receptor (TCR) signalling to the canonical IkappaB kinase (IKK)/NF (nuclear factor)-kappaB pathway. Earlier studies have indicated that the COP9 signalosome (CSN), a pleiotropic regulator of the ubiquitin/26S proteasome system, controls antigen responses in T cells....

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2009.64

    authors: Welteke V,Eitelhuber A,Düwel M,Schweitzer K,Naumann M,Krappmann D

    更新日期:2009-06-01 00:00:00

  • Exosomes and other extracellular vesicles in host-pathogen interactions.

    abstract::An effective immune response requires the engagement of host receptors by pathogen-derived molecules and the stimulation of an appropriate cellular response. Therefore, a crucial factor in our ability to control an infection is the accessibility of our immune cells to the foreign material. Exosomes-which are extracell...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.15252/embr.201439363

    authors: Schorey JS,Cheng Y,Singh PP,Smith VL

    更新日期:2015-01-01 00:00:00

  • Organellar proteomics: turning inventories into insights.

    abstract::Subcellular organization is yielding to large-scale analysis. Researchers are now applying robust mass-spectrometry-based proteomics methods to obtain an inventory of biochemically isolated organelles that contain hundreds of proteins. High-resolution methods allow accurate protein identification, and novel algorithms...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1038/sj.embor.7400780

    authors: Andersen JS,Mann M

    更新日期:2006-09-01 00:00:00

  • Resistance of glia-like central and peripheral neural stem cells to genetically induced mitochondrial dysfunction--differential effects on neurogenesis.

    abstract::Mitochondria play a central role in stem cell homeostasis. Reversible switching between aerobic and anaerobic metabolism is critical for stem cell quiescence, multipotency, and differentiation, as well as for cell reprogramming. However, the effect of mitochondrial dysfunction on neural stem cell (NSC) function is uns...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201540982

    authors: Díaz-Castro B,Pardal R,García-Flores P,Sobrino V,Durán R,Piruat JI,López-Barneo J

    更新日期:2015-11-01 00:00:00

  • Rapid activation of CLOCK by Ca2+-dependent protein kinase C mediates resetting of the mammalian circadian clock.

    abstract::In mammals, immediate-early transcription of the Period 1 (Per1) gene is crucial for resetting the mammalian circadian clock. Here, we show that CLOCK is a real signalling molecule that mediates the serum-evoked rapid induction of Per1 in fibroblasts through the Ca2+-dependent protein kinase C (PKC) pathway. Stimulati...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400920

    authors: Shim HS,Kim H,Lee J,Son GH,Cho S,Oh TH,Kang SH,Seen DS,Lee KH,Kim K

    更新日期:2007-04-01 00:00:00

  • Sex and sugar in yeast: two distinct GPCR systems.

    abstract::Although eukaryotic G-protein coupled receptor (GPCR) systems are well known for their ability to detect and mediate rapid responses to extracellular signals, the full range of stimuli to which they respond may not yet have been identified. Activation of GPCRs by hormones, pheromones, odorants, neurotransmitters, ligh...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1093/embo-reports/kve132

    authors: Versele M,Lemaire K,Thevelein JM

    更新日期:2001-07-01 00:00:00

  • The solution structure of PapGII from uropathogenic Escherichia coli and its recognition of glycolipid receptors.

    abstract::Uropathogenic Escherichia coli (UPEC) is the primary cause of symptomatic urinary tract infection. The P-pili, a bacterial surface organelle, mediates the bacterial host--cell adhesion. The PapG adhesin has generated much interest in recent years, not only because of its clinical value, i.e. in the prevention of micro...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1093/embo-reports/kve133

    authors: Sung MA,Fleming K,Chen HA,Matthews S

    更新日期:2001-07-01 00:00:00

  • Ars Moriendi; the art of dying well - new insights into the molecular pathways of necroptotic cell death.

    abstract::When our time comes to die most people would probably opt for a quick, peaceful and painless exit. But the manner and timing are rarely under our direct control. Hence the Ars moriendi, literally, "The Art of Dying", two texts written in Latin around the 15th century that offered advice on how to die well according to...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1002/embr.201337970

    authors: Murphy JM,Silke J

    更新日期:2014-02-01 00:00:00

  • Chromosome misalignments induce spindle-positioning defects.

    abstract::Cortical pulling forces on astral microtubules are essential to position the spindle. These forces are generated by cortical dynein, a minus-end directed motor. Previously, another dynein regulator termed Spindly was proposed to regulate dynein-dependent spindle positioning. However, the mechanism of how Spindly regul...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201541143

    authors: Tame MA,Raaijmakers JA,Afanasyev P,Medema RH

    更新日期:2016-03-01 00:00:00

  • Prediction of amyloid aggregation in vivo.

    abstract::Many human diseases owe their pathology, to some degree, to the erroneous conversion of proteins from their soluble state into fibrillar, β-structured aggregates, often referred to as amyloid fibrils. Neurodegenerative diseases, such as Alzheimer and spongiform encephalopathies, as well as type 2 diabetes and both loc...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1038/embor.2011.116

    authors: Belli M,Ramazzotti M,Chiti F

    更新日期:2011-07-01 00:00:00

  • Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin.

    abstract::Centromeric constitutive heterochromatin is marked by DNA methylation and dimethylated histone H3 Lys 9 (H3K9me2) in Arabidopsis. RNA-directed DNA methylation (RdDM) is a process that uses 24-nucleotide (nt) small interfering RNAs (siRNAs) to induce de novo methylation to its homologous DNA sequences. Despite the pres...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2009.152

    authors: Schoft VK,Chumak N,Mosiolek M,Slusarz L,Komnenovic V,Brownfield L,Twell D,Kakutani T,Tamaru H

    更新日期:2009-09-01 00:00:00

  • Three-dimensional interplay among the ligand-binding domains of the urokinase-plasminogen-activator-receptor-associated protein, Endo180.

    abstract::Endo180, also known as the urokinase plasminogen activator receptor (uPAR)-associated protein (uPARAP), is one of the four members of the mannose receptor family, and is implicated in extracellular-matrix remodelling through its interactions with collagens, sugars and uPAR. The extracellular portion of Endo180 contain...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.embor898

    authors: Rivera-Calzada A,Robertson D,MacFadyen JR,Boskovic J,Isacke CM,Llorca O

    更新日期:2003-08-01 00:00:00

  • Snail genes at the crossroads of symmetric and asymmetric processes in the developing mesoderm.

    abstract::Retinoic acid (RA) signalling ensures that vertebrate mesoderm segmentation is bilaterally synchronized, and corrects transient interferences from asymmetric left-right (L-R) signals involved in organ lateralization. Snail genes participate in both these processes and, although they are expressed symmetrically in the ...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400867

    authors: Morales AV,Acloque H,Ocaña OH,de Frutos CA,Gold V,Nieto MA

    更新日期:2007-01-01 00:00:00

  • Progressive dosage compensation during Drosophila embryogenesis is reflected by gene arrangement.

    abstract::In Drosophila melanogaster males, X-chromosome monosomy is compensated by chromosome-wide transcription activation. We found that complete dosage compensation during embryogenesis takes surprisingly long and is incomplete even after 10 h of development. Although the activating dosage compensation complex (DCC) associa...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201948138

    authors: Prayitno K,Schauer T,Regnard C,Becker PB

    更新日期:2019-08-01 00:00:00

  • A novel muscle LIM-only protein is generated from the paxillin gene locus in Drosophila.

    abstract::Paxillin is a protein containing four LIM domains, and functions in integrin signaling. We report here that two transcripts are generated from the paxillin gene locus in Drosophila; one encodes a protein homolog of the vertebrate Paxillin (DPxn37), and the other a protein with only three LIM domains, partly encoded by...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1093/embo-reports/kve178

    authors: Yagi R,Ishimaru S,Yano H,Gaul U,Hanafusa H,Sabe H

    更新日期:2001-09-01 00:00:00

  • Antagonistic functions of LMNA isoforms in energy expenditure and lifespan.

    abstract::Alternative RNA processing of LMNA pre-mRNA produces three main protein isoforms, that is, lamin A, progerin, and lamin C. De novo mutations that favor the expression of progerin over lamin A lead to Hutchinson-Gilford progeria syndrome (HGPS), providing support for the involvement of LMNA processing in pathological a...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1002/embr.201338126

    authors: Lopez-Mejia IC,de Toledo M,Chavey C,Lapasset L,Cavelier P,Lopez-Herrera C,Chebli K,Fort P,Beranger G,Fajas L,Amri EZ,Casas F,Tazi J

    更新日期:2014-05-01 00:00:00

  • Enhanced microRNA accumulation through stemloop-adjacent introns.

    abstract::MicroRNAs (miRNAs) originate from stemloop-forming precursor RNAs found in longer primary transcripts that often contain introns. We show that in plants, those introns, when located 3' of the stemloop, can promote mature miRNA accumulation, through a mechanism that likely operates at the level of miRNA processing or s...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2013.58

    authors: Schwab R,Speth C,Laubinger S,Voinnet O

    更新日期:2013-07-01 00:00:00

  • Seaside transportation--from structure to function of translocation machines.

    abstract::The EMBO conference 'From Structure to Function of Translocation Machines' took place in April 2013 in Dubrovnik, Croatia. The meeting brought together a mix of established and aspiring researchers to discuss a wealth of unpublished data and ideas in a lively scientific programme of talks designed to shatter the estab...

    journal_title:EMBO reports

    pub_type:

    doi:10.1038/embor.2013.79

    authors: Lithgow T,Waksman G

    更新日期:2013-07-01 00:00:00

  • Optogenetic inhibition of Delta reveals digital Notch signalling output during tissue differentiation.

    abstract::Spatio-temporal regulation of signalling pathways plays a key role in generating diverse responses during the development of multicellular organisms. The role of signal dynamics in transferring signalling information in vivo is incompletely understood. Here, we employ genome engineering in Drosophila melanogaster to g...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201947999

    authors: Viswanathan R,Necakov A,Trylinski M,Harish RK,Krueger D,Esposito E,Schweisguth F,Neveu P,De Renzis S

    更新日期:2019-12-05 00:00:00

  • HIF1α deubiquitination by USP8 is essential for ciliogenesis in normoxia.

    abstract::Loss of primary cilia is a key feature of von Hippel-Lindau tumor suppressor (VHL)-associated pathology. Although VHL-deficiency predisposes cells to precipitous cilia disassembly in response to growth factor cues, it does not affect ciliogenesis. Here, using a siRNA-based screen to find genes that are essential for c...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1002/embr.201337688

    authors: Troilo A,Alexander I,Muehl S,Jaramillo D,Knobeloch KP,Krek W

    更新日期:2014-01-01 00:00:00

  • The structure of the flock house virus B2 protein, a viral suppressor of RNA interference, shows a novel mode of double-stranded RNA recognition.

    abstract::We report the structure of the flock house virus B2 protein, a potent suppressor of RNA interference (RNAi) in animals and plants. The B2 protein is a homodimer in solution and contains three alpha-helices per monomer. Chemical shift perturbation shows that an antiparallel arrangement of helices (alpha2/alpha2') forms...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400583

    authors: Lingel A,Simon B,Izaurralde E,Sattler M

    更新日期:2005-12-01 00:00:00

  • Brown adipocyte glucose metabolism: a heated subject.

    abstract::The energy expending and glucose sink properties of brown adipose tissue (BAT) make it an attractive target for new obesity and diabetes treatments. Despite decades of research, only recently have mechanistic studies started to provide a more complete and consistent picture of how activated brown adipocytes handle glu...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.15252/embr.201846404

    authors: Hankir MK,Klingenspor M

    更新日期:2018-09-01 00:00:00

  • STK38 kinase acts as XPO1 gatekeeper regulating the nuclear export of autophagy proteins and other cargoes.

    abstract::STK38 (also known as NDR1) is a Hippo pathway serine/threonine protein kinase with multifarious functions in normal and cancer cells. Using a context-dependent proximity-labeling assay, we identify more than 250 partners of STK38 and find that STK38 modulates its partnership depending on the cellular context by increa...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201948150

    authors: Martin AP,Jacquemyn M,Lipecka J,Chhuon C,Aushev VN,Meunier B,Singh MK,Carpi N,Piel M,Codogno P,Hergovich A,Parrini MC,Zalcman G,Guerrera IC,Daelemans D,Camonis JH

    更新日期:2019-11-05 00:00:00

  • The wild-type Schizosaccharomyces pombe mat1 imprint consists of two ribonucleotides.

    abstract::The imprint at the mat1 locus of Schizosaccharomyces pombe acts to initiate the replication-coupled recombination event that underlies mating-type switching. However, the nature of the imprint has been an area of dispute. Two alternative models have been proposed: one stated that the imprint is a nick in the DNA, wher...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400576

    authors: Vengrova S,Dalgaard JZ

    更新日期:2006-01-01 00:00:00

  • The human GINS complex binds to and specifically stimulates human DNA polymerase alpha-primase.

    abstract::The eukaryotic GINS complex has an essential role in the initiation and elongation phases of genome duplication. It is composed of four paralogous subunits--Sld5, Psf1, Psf2 and Psf3--which are ubiquitous and evolutionarily conserved in eukaryotic organisms. Here, we report the biochemical characterization of the huma...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400870

    authors: De Falco M,Ferrari E,De Felice M,Rossi M,Hübscher U,Pisani FM

    更新日期:2007-01-01 00:00:00

  • ARF stimulates XPC to trigger nucleotide excision repair by regulating the repressor complex of E2F4.

    abstract::The tumour suppressor ARF (alternative reading frame), which is mutated or silenced in various tumours, has a crucial role in tumour surveillance to suppress unwarranted cell growth and proliferation. ARF has also been linked to the DNA-damage-induced response of p53 because of its ability to inhibit murine double min...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/embor.2009.139

    authors: Dominguez-Brauer C,Chen YJ,Brauer PM,Pimkina J,Raychaudhuri P

    更新日期:2009-09-01 00:00:00

  • The thymic cortical epithelium determines the TCR repertoire of IL-17-producing γδT cells.

    abstract::The thymus provides a specialized microenvironment in which distinct subsets of thymic epithelial cells (TECs) support T-cell development. Here, we describe the significance of cortical TECs (cTECs) in T-cell development, using a newly established mouse model of cTEC deficiency. The deficiency of mature cTECs caused a...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.15252/embr.201540096

    authors: Nitta T,Muro R,Shimizu Y,Nitta S,Oda H,Ohte Y,Goto M,Yanobu-Takanashi R,Narita T,Takayanagi H,Yasuda H,Okamura T,Murata S,Suzuki H

    更新日期:2015-05-01 00:00:00

  • Widespread PrPSc accumulation in muscles of hamsters orally infected with scrapie.

    abstract::Scrapie, bovine spongiform encephalopathy and chronic wasting disease are orally communicable, transmissible spongiform encephalopathies (TSEs). As zoonotic transmissions of TSE agents may pose a risk to human health, the identification of reservoirs for infectivity in animal tissues and their exclusion from human con...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.embor827

    authors: Thomzig A,Kratzel C,Lenz G,Krüger D,Beekes M

    更新日期:2003-05-01 00:00:00

  • Dynamic survey of mitochondria by ubiquitin.

    abstract::Ubiquitin is a post-translational modifier with proteolytic and non-proteolytic roles in many biological processes. At mitochondria, it performs regulatory homeostatic functions and contributes to mitochondrial quality control. Ubiquitin is essential for mitochondrial fusion, regulates mitochondria-ER contacts, and pa...

    journal_title:EMBO reports

    pub_type: 杂志文章,评审

    doi:10.1002/embr.201338225

    authors: Escobar-Henriques M,Langer T

    更新日期:2014-03-01 00:00:00

  • Helicase89B is a Mot1p/BTAF1 homologue that mediates an antimicrobial response in Drosophila.

    abstract::We have identified a novel component, Helicase89B, that is required for the inducible antimicrobial response in Drosophila larvae by means of a P-element insertional genetic screen. Helicase89B belongs to the Mot1p/BTAF1 subfamily of SNF2-like ATPases. This subfamily can interact with TATA-binding proteins, but whethe...

    journal_title:EMBO reports

    pub_type: 杂志文章

    doi:10.1038/sj.embor.7400542

    authors: Yagi Y,Ip YT

    更新日期:2005-11-01 00:00:00