Evaluation of quinclorac toxicity and alleviation by salicylic acid in rice seedlings using ground-based visible/near-infrared hyperspectral imaging.

Abstract:

Background:To investigate potential effects of herbicide phytotoxic on crops, a major challenge is a lack of non-destructive and rapid methods to detect plant growth that could allow characterization of herbicide-resistant plants. In such a case, hyperspectral imaging can quickly obtain the spectrum for each pixel in the image and monitor status of plants harmlessly. Method:Hyperspectral imaging covering the spectral range of 380-1030 nm was investigated to determine the herbicide toxicity in rice cultivars. Two rice cultivars, Xiushui 134 and Zhejing 88, were respectively treated with quinclorac alone and plus salicylic acid (SA) pre-treatment. After ten days of treatments, we collected hyperspectral images and physiological parameters to analyze the differences. The score images obtained were used to explore the differences among samples under diverse treatments by conducting principal component analysis on hyperspectral images. To get useful information from original data, feature extraction was also conducted by principal component analysis. In order to classify samples under diverse treatments, full-spectra-based support vector classification (SVC) models and extracted-feature-based SVC models were established. The prediction maps of samples under different treatments were constructed by applying the SVC models using extracted features on hyperspectral images, which provided direct visual information of rice growth status under herbicide stress. The physiological analysis with the changes of stress-responsive enzymes confirmed the differences of samples under different treatments. Results:The physiological analysis showed that SA alleviated the quinclorac toxicity by stimulating enzymatic activity and reducing the levels of reactive oxygen species. The score images indicated there were spectral differences among the samples under different treatments. Full-spectra-based SVC models and extracted-feature-based SVC models obtained good results for the aboveground parts, with classification accuracy over 80% in training, validation and prediction set. The SVC models for Zhejing 88 presented better results than those for Xiushui 134, revealing the different herbicide tolerance between rice cultivars. Conclusion:We develop a reliable and effective model using hyperspectral imaging technique which enables the evaluation and visualization of herbicide toxicity for rice. The reflectance spectra variations of rice could reveal the stress status of herbicide toxicity in rice along with the physiological parameters. The visualization of the herbicide toxicity in rice would help to provide the intuitive vision of herbicide toxicity in rice. A monitoring system for detecting herbicide toxicity and its alleviation by SA will benefit from the remarkable success of SVC models and distribution maps.

journal_name

Plant Methods

journal_title

Plant methods

authors

Wang J,Zhang C,Shi Y,Long M,Islam F,Yang C,Yang S,He Y,Zhou W

doi

10.1186/s13007-020-00576-7

subject

Has Abstract

pub_date

2020-03-05 00:00:00

pages

30

issn

1746-4811

pii

576

journal_volume

16

pub_type

杂志文章
  • A convenient method for simultaneous quantification of multiple phytohormones and metabolites: application in study of rice-bacterium interaction.

    abstract:BACKGROUND:Simultaneous analysis of multiple functional-related phytohormones and their metabolites will improve our understanding of interactions among different hormones in the same biologic process. RESULTS:A method was developed for simultaneous quantification of multiple phytohormones, abscisic acid, indole-3-ace...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-2

    authors: Liu H,Li X,Xiao J,Wang S

    更新日期:2012-01-15 00:00:00

  • Fast virtual histology using X-ray in-line phase tomography: application to the 3D anatomy of maize developing seeds.

    abstract:BACKGROUND:Despite increasing demand, imaging the internal structure of plant organs or tissues without the use of transgenic lines expressing fluorescent proteins remains a challenge. Techniques such as magnetic resonance imaging, optical projection tomography or X-ray absorption tomography have been used with various...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-015-0098-y

    authors: Rousseau D,Widiez T,Di Tommaso S,Rositi H,Adrien J,Maire E,Langer M,Olivier C,Peyrin F,Rogowsky P

    更新日期:2015-12-18 00:00:00

  • Skewed distribution of leaf color RGB model and application of skewed parameters in leaf color description model.

    abstract:Background:Image processing techniques have been widely used in the analysis of leaf characteristics. Earlier techniques for processing digital RGB color images of plant leaves had several drawbacks, such as inadequate de-noising, and adopting normal-probability statistical estimation models which have few parameters a...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-0561-2

    authors: Chen Z,Wang F,Zhang P,Ke C,Zhu Y,Cao W,Jiang H

    更新日期:2020-02-26 00:00:00

  • Poinsettia protoplasts - a simple, robust and efficient system for transient gene expression studies.

    abstract:BACKGROUND:Transient gene expression systems are indispensable tools in molecular biology. Yet, their routine application is limited to few plant species often requiring substantial equipment and facilities. High chloroplast and chlorophyll content may further impede downstream applications of transformed cells from gr...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-14

    authors: Pitzschke A,Persak H

    更新日期:2012-05-04 00:00:00

  • A rapid phenotyping method for adult plant resistance to leaf rust in wheat.

    abstract:BACKGROUND:Leaf rust (LR), caused by Puccinia triticina and is an important disease of wheat (Triticum aestivum L.). The most sustainable method for controlling rust diseases is deployment of cultivars incorporating adult plant resistance (APR). However, phenotyping breeding populations or germplasm collections for res...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0117-7

    authors: Riaz A,Periyannan S,Aitken E,Hickey L

    更新日期:2016-03-02 00:00:00

  • Instantaneous and non-destructive relative water content estimation from deep learning applied to resonant ultrasonic spectra of plant leaves.

    abstract:Background:Non-contact resonant ultrasound spectroscopy (NC-RUS) has been proven as a reliable technique for the dynamic determination of leaf water status. It has been already tested in more than 50 plant species. In parallel, relative water content (RWC) is highly used in the ecophysiological field to describe the de...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0511-z

    authors: Fariñas MD,Jimenez-Carretero D,Sancho-Knapik D,Peguero-Pina JJ,Gil-Pelegrín E,Gómez Álvarez-Arenas T

    更新日期:2019-11-07 00:00:00

  • Gene targeting and transgene stacking using intra genomic homologous recombination in plants.

    abstract::Modern agriculture has created a demand for plant biotechnology products that provide durable resistance to insect pests, tolerance of herbicide applications for weed control, and agronomic traits tailored for specific geographies. These transgenic trait products require a modular and sequential multigene stacking pla...

    journal_title:Plant methods

    pub_type: 杂志文章,评审

    doi:10.1186/s13007-016-0111-0

    authors: Kumar S,Barone P,Smith M

    更新日期:2016-02-01 00:00:00

  • Use of the non-radioactive SUnSET method to detect decreased protein synthesis in proteasome inhibited Arabidopsis roots.

    abstract:BACKGROUND:In eukaryotic cells, the proteasome maintains homeostasis by selectively degrading regulatory and misfolded proteins, and in doing so contributes to the amino acid pool. Inhibition of the proteasome in yeast and human cells decreases de novo protein synthesis. However, it is not know if proteasome inhibition...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0120-z

    authors: Van Hoewyk D

    更新日期:2016-03-16 00:00:00

  • Parametric mapping of cellular morphology in plant tissue sections by gray level granulometry.

    abstract:Background:The cellular morphology of plant organs is strongly related to other physical properties such as shape, size, growth, mechanical properties or chemical composition. Cell morphology often vary depending on the type of tissue, or on the distance to a specific tissue. A common challenge in quantitative plant hi...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00603-7

    authors: Legland D,Guillon F,Devaux MF

    更新日期:2020-05-06 00:00:00

  • Hyperspectral band selection using genetic algorithm and support vector machines for early identification of charcoal rot disease in soybean stems.

    abstract:Background:Charcoal rot is a fungal disease that thrives in warm dry conditions and affects the yield of soybeans and other important agronomic crops worldwide. There is a need for robust, automatic and consistent early detection and quantification of disease symptoms which are important in breeding programs for the de...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0349-9

    authors: Nagasubramanian K,Jones S,Sarkar S,Singh AK,Singh A,Ganapathysubramanian B

    更新日期:2018-10-03 00:00:00

  • Testing deep placement of an 15N tracer as a method for in situ deep root phenotyping of wheat, barley and ryegrass.

    abstract:Background:Deep rooting is one of the most promising plant traits for improving crop yield under water-limited conditions. Most root phenotyping methods are designed for laboratory-grown plants, typically measuring very young plants not grown in soil and not allowing full development of the root system. Results:This s...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0533-6

    authors: Chen S,Svane SF,Thorup-Kristensen K

    更新日期:2019-12-09 00:00:00

  • A new approach to varietal identification in plants by microsatellite high resolution melting analysis: application to the verification of grapevine and olive cultivars.

    abstract:BACKGROUND:Microsatellites are popular molecular markers in many plant species due to their stable and highly polymorphic nature. A number of analysis methods have been described but analyses of these markers are typically performed on cumbersome polyacrylamide gels or more conveniently by capillary electrophoresis on ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-4-8

    authors: Mackay JF,Wright CD,Bonfiglioli RG

    更新日期:2008-05-19 00:00:00

  • An efficient transient expression system for gene function analysis in rose.

    abstract:Background:Roses are widely used as garden ornamental plants and cut flowers. Rosa chinensis cv 'Old Blush' has been used as a model genotype in rose studies due to its contribution to recurrent flowering and tea scent traits of modern roses. The deficiency of efficient genetic transformation systems is a handicap limi...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-017-0268-1

    authors: Lu J,Bai M,Ren H,Liu J,Wang C

    更新日期:2017-12-22 00:00:00

  • Automatic segmentation and measurement methods of living stomata of plants based on the CV model.

    abstract:Background:The stomata of plants mainly regulate gas exchange and water dispersion between the interior and external environments of plants and play a major role in the plants' health. The existing methods of stomata segmentation and measurement are mostly for specialized plants. The purpose of this research is to deve...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0453-5

    authors: Li K,Huang J,Song W,Wang J,Lv S,Wang X

    更新日期:2019-07-03 00:00:00

  • An improved strategy to analyse strigolactones in complex sample matrices using UHPLC-MS/MS.

    abstract:Background:Strigolactones represent the most recently described group of plant hormones involved in many aspects of plant growth regulation. Simultaneously, root exuded strigolactones mediate rhizosphere signaling towards beneficial arbuscular mycorrhizal fungi, but also attract parasitic plants. The seed germination o...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-020-00669-3

    authors: Floková K,Shimels M,Andreo Jimenez B,Bardaro N,Strnad M,Novák O,Bouwmeester HJ

    更新日期:2020-09-17 00:00:00

  • Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants.

    abstract::Primer design is a critical step in the application of PCR-based technologies in gene expression and genetic diversity analysis. As more plant genomes have been sequenced in recent years, the emphasis of primer design strategy has shifted to genome-wide and high-throughput direction. This paper summarizes recent advan...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-2-4

    authors: Yang X,Scheffler BE,Weston LA

    更新日期:2006-03-01 00:00:00

  • Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites.

    abstract:BACKGROUND:Protein phosphorylation is accepted as a major regulatory pathway in plants. More than 1000 protein kinases are predicted in the Arabidopsis proteome, however, only a few studies look systematically for in vivo protein phosphorylation sites. Owing to the low stoichiometry and low abundance of phosphorylated ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-1-9

    authors: Wolschin F,Weckwerth W

    更新日期:2005-11-01 00:00:00

  • Machine learning driven non-invasive approach of water content estimation in living plant leaves using terahertz waves.

    abstract:Background:The demand for effective use of water resources has increased because of ongoing global climate transformations in the agriculture science sector. Cost-effective and timely distributions of the appropriate amount of water are vital not only to maintain a healthy status of plants leaves but to drive the produ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0522-9

    authors: Zahid A,Abbas HT,Ren A,Zoha A,Heidari H,Shah SA,Imran MA,Alomainy A,Abbasi QH

    更新日期:2019-11-18 00:00:00

  • Analysing complex Triticeae genomes - concepts and strategies.

    abstract::The genomic sequences of many important Triticeae crop species are hard to assemble and analyse due to their large genome sizes, (in part) polyploid genomes and high repeat content. Recently, the draft genomes of barley and bread wheat were reported thanks to cost-efficient and fast NGS technologies. The genome of bar...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-9-35

    authors: Spannagl M,Martis MM,Pfeifer M,Nussbaumer T,Mayer KF

    更新日期:2013-09-06 00:00:00

  • Expanding the bioluminescent reporter toolkit for plant science with NanoLUC.

    abstract:Background:Protein data over circadian time scale is scarce for clock transcription factors. Further work in this direction is required for refining quantitative clock models. However, gathering highly resolved dynamics of low-abundance transcription factors has been a major challenge in the field. In this work we prov...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-019-0454-4

    authors: Urquiza-García U,Millar AJ

    更新日期:2019-07-08 00:00:00

  • An improved procedure for isolation of high-quality RNA from nematode-infected Arabidopsis roots through laser capture microdissection.

    abstract:BACKGROUND:Cyst nematodes are biotrophs that form specialized feeding structures in the roots of host plants, which consist of a syncytial fusion of hypertrophied cells. The formation of syncytium is accompanied by profound transcriptional changes and active metabolism in infected tissues. The challenge in gene express...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0123-9

    authors: Anjam MS,Ludwig Y,Hochholdinger F,Miyaura C,Inada M,Siddique S,Grundler FM

    更新日期:2016-04-26 00:00:00

  • Isolation of dimorphic chloroplasts from the single-cell C4 species Bienertia sinuspersici.

    abstract:: Three terrestrial plants are known to perform C4 photosynthesis without the dual-cell system by partitioning two distinct types of chloroplasts in separate cytoplasmic compartments. We report herein a protocol for isolating the dimorphic chloroplasts from Bienertia sinuspersici. Hypo-osmotically lysed protoplasts und...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-8

    authors: Lung SC,Yanagisawa M,Chuong SD

    更新日期:2012-03-06 00:00:00

  • Exploration of plant genomes in the FLAGdb++ environment.

    abstract:BACKGROUND:In the contexts of genomics, post-genomics and systems biology approaches, data integration presents a major concern. Databases provide crucial solutions: they store, organize and allow information to be queried, they enhance the visibility of newly produced data by comparing them with previously published r...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-7-8

    authors: Dèrozier S,Samson F,Tamby JP,Guichard C,Brunaud V,Grevet P,Gagnot S,Label P,Leplé JC,Lecharny A,Aubourg S

    更新日期:2011-03-29 00:00:00

  • The Rg1 allele as a valuable tool for genetic transformation of the tomato 'Micro-Tom' model system.

    abstract:BACKGROUND:The cultivar Micro-Tom (MT) is regarded as a model system for tomato genetics due to its short life cycle and miniature size. However, efforts to improve tomato genetic transformation have led to protocols dependent on the costly hormone zeatin, combined with an excessive number of steps. RESULTS:Here we re...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-6-23

    authors: Pino LE,Lombardi-Crestana S,Azevedo MS,Scotton DC,Borgo L,Quecini V,Figueira A,Peres LE

    更新日期:2010-10-07 00:00:00

  • Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana.

    abstract:BACKGROUND:Identifying cis-regulatory elements is critical in understanding the direct and indirect regulatory mechanisms of gene expression. Current approaches include DNase-seq, a technique that combines sensitivity to the nonspecific endonuclease DNase I with high throughput sequencing to identify regions of regulat...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-015-0087-1

    authors: Cumbie JS,Filichkin SA,Megraw M

    更新日期:2015-09-04 00:00:00

  • Striga parasitizes transgenic hairy roots of Zea mays and provides a tool for studying plant-plant interactions.

    abstract:BACKGROUND:Striga species are noxious root hemi-parasitic weeds that debilitate cereal production in sub-Saharan Africa (SSA). Control options for Striga are limited and developing Striga resistant crop germplasm is regarded as the best and most sustainable control measure. Efforts to improve germplasm for Striga resis...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-20

    authors: Runo S,Macharia S,Alakonya A,Machuka J,Sinha N,Scholes J

    更新日期:2012-06-21 00:00:00

  • A sterile hydroponic system for characterising root exudates from specific root types and whole-root systems of large crop plants.

    abstract:Background:Plant roots release a variety of organic compounds into the soil which alter the physical, chemical and biological properties of the rhizosphere. Root exudates are technically challenging to measure in soil because roots are difficult to access and exudates can be bound by minerals or consumed by microorgani...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-018-0380-x

    authors: Kawasaki A,Okada S,Zhang C,Delhaize E,Mathesius U,Richardson AE,Watt M,Gilliham M,Ryan PR

    更新日期:2018-12-20 00:00:00

  • Barley callus: a model system for bioengineering of starch in cereals.

    abstract:BACKGROUND:Starch is the most important source of calories for human nutrition and the majority of it is produced by cereal farming. Starch is also used as a renewable raw material in a range of industrial sectors. It can be chemically modified to introduce new physicochemical properties. In this way starch is adapted ...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-8-36

    authors: Carciofi M,Blennow A,Nielsen MM,Holm PB,Hebelstrup KH

    更新日期:2012-09-07 00:00:00

  • SSHscreen and SSHdb, generic software for microarray based gene discovery: application to the stress response in cowpea.

    abstract:BACKGROUND:Suppression subtractive hybridization is a popular technique for gene discovery from non-model organisms without an annotated genome sequence, such as cowpea (Vigna unguiculata (L.) Walp). We aimed to use this method to enrich for genes expressed during drought stress in a drought tolerant cowpea line. Howev...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/1746-4811-6-10

    authors: Coetzer N,Gazendam I,Oelofse D,Berger DK

    更新日期:2010-04-01 00:00:00

  • Protocol: a fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample.

    abstract:BACKGROUND:The elucidation of complex biological systems requires integration of multiple molecular parameters. Accordingly, high throughput methods like transcriptomics, proteomics, metabolomics and lipidomics have emerged to provide the tools for successful system-wide investigations. Unfortunately, optimized analysi...

    journal_title:Plant methods

    pub_type: 杂志文章

    doi:10.1186/s13007-016-0146-2

    authors: Salem MA,Jüppner J,Bajdzienko K,Giavalisco P

    更新日期:2016-11-10 00:00:00