Integrated Proteomics and Metabolomics Analysis Provides Insights into Ganoderic Acid Biosynthesis in Response to Methyl Jasmonate in Ganoderma Lucidum.

Abstract:

:Ganoderma lucidum is widely recognized as a medicinal basidiomycete. It was previously reported that the plant hormone methyl jasmonate (MeJA) could induce the biosynthesis of ganoderic acids (GAs), which are the main active ingredients of G. lucidum. However, the regulatory mechanism is still unclear. In this study, integrated proteomics and metabolomics were employed on G. lucidum to globally identify differences in proteins and metabolites under MeJA treatment for 15 min (M15) and 24 h (M24). Our study successfully identified 209 differential abundance proteins (DAPs) in M15 and 202 DAPs in M24. We also identified 154 metabolites by GC-MS and 70 metabolites by LC-MS in M24 that are involved in several metabolic pathways. With an in-depth analysis, we found some DAPs and metabolites that are involved in the oxidoreduction process, secondary metabolism, energy metabolism, transcriptional and translational regulation, and protein synthesis. In particular, our results reveal that MeJA treatment leads to metabolic rearrangement that inhibited the normal glucose metabolism, energy supply, and protein synthesis of cells but promoted secondary metabolites, including GAs. In conclusion, our proteomics and metabolomics data further confirm the promoting effect of MeJA on the biosynthesis of GAs in G. lucidum and will provide a valuable resource for further investigation of the molecular mechanisms of MeJA signal response and GA biosynthesis in G. lucidum and other related species.

journal_name

Int J Mol Sci

authors

Jiang AL,Liu YN,Liu R,Ren A,Ma HY,Shu LB,Shi L,Zhu J,Zhao MW

doi

10.3390/ijms20246116

subject

Has Abstract

pub_date

2019-12-04 00:00:00

issue

24

issn

1422-0067

pii

ijms20246116

journal_volume

20

pub_type

杂志文章
  • Physiological and Metabolomic Responses of Kale to Combined Chilling and UV-A Treatment.

    abstract::Short-term abiotic stress treatment before harvest can enhance the quality of horticultural crops cultivated in controlled environments. Here, we investigated the effects of combined chilling and UV-A treatment on the accumulation of phenolic compounds in kale (Brassica oleracea var. acephala). Five-week-old plants we...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20194950

    authors: Lee JH,Kwon MC,Jung ES,Lee CH,Oh MM

    更新日期:2019-10-08 00:00:00

  • Microbiological, Physicochemical, and Immunological Analysis of a Commercial Cashew Nut-Based Yogurt.

    abstract::Nut-based milks and yogurts are gaining popularity, but may not offer the same benefits as dairy yogurts to consumers. Cashew nuts often cause severe allergic reactions, and cashew nut allergens are stable to several types of processing. To compare its characteristics to dairy yogurt and characterize the effects of fe...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21218267

    authors: Mattison CP,Aryana KJ,Clermont K,Prestenburg E,Lloyd SW,Grimm CC,Wasserman RL

    更新日期:2020-11-04 00:00:00

  • DM1 Phenotype Variability and Triplet Repeat Instability: Challenges in the Development of New Therapies.

    abstract::Myotonic dystrophy type 1 (DM1) is a complex neuromuscular disease caused by an unstable cardiotocography (CTG) repeat expansion in the DMPK gene. This disease is characterized by high clinical and genetic variability, leading to some difficulties in the diagnosis and prognosis of DM1. Better understanding the origin ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21020457

    authors: Tomé S,Gourdon G

    更新日期:2020-01-10 00:00:00

  • The Stable Level of Glutamine synthetase 2 Plays an Important Role in Rice Growth and in Carbon-Nitrogen Metabolic Balance.

    abstract::Glutamine synthetase 2 (GS2) is a key enzyme involved in the ammonium metabolism in plant leaves. In our previous study, we obtained GS2-cosuppressed plants, which displayed a normal growth phenotype at the seedling stage, while at the tillering stage they showed a chlorosis phenotype. In this study, to investigate th...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms160612713

    authors: Bao A,Zhao Z,Ding G,Shi L,Xu F,Cai H

    更新日期:2015-06-04 00:00:00

  • Aronia melanocarpa (Black Chokeberry) Reduces Ethanol-Induced Gastric Damage via Regulation of HSP-70, NF-κB, and MCP-1 Signaling.

    abstract::Aronia melanocarpa (Michx.) Ell. belongs to the Rosaceae family. The purpose of this study is to explore the gastroprotective effect of the Aronia melanocarpa hydro-alcoholic extract (AMHAE) against ethanol-induced gastric ulcer in a rat model. Different concentrations (50, 100, and 200 mg/kg) of AMHAE, or 30 mg/kg of...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18061195

    authors: Paulrayer A,Adithan A,Lee JH,Moon KH,Kim DG,Im SY,Kang CW,Kim NS,Kim JH

    更新日期:2017-06-05 00:00:00

  • Genomic Prediction for Grain Yield and Yield-Related Traits in Chinese Winter Wheat.

    abstract::Genomic selection (GS) is a strategy to predict the genetic merits of individuals using genome-wide markers. However, GS prediction accuracy is affected by many factors, including missing rate and minor allele frequency (MAF) of genotypic data, GS models, trait features, etc. In this study, we used one wheat populatio...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21041342

    authors: Ali M,Zhang Y,Rasheed A,Wang J,Zhang L

    更新日期:2020-02-17 00:00:00

  • Transcription Factor ANAC074 Binds to NRS1, NRS2, or MybSt1 Element in Addition to the NACRS to Regulate Gene Expression.

    abstract::NAC (NAM, ATAF1/2, and CUC2) transcription factors play important roles in many biological processes, and mainly bind to the NACRS with core sequences "CACG" or "CATGTG" to regulate gene expression. However, whether NAC proteins can bind to other motifs without these core sequences remains unknown. In this study, we e...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19103271

    authors: He L,Xu J,Wang Y,Yang K

    更新日期:2018-10-21 00:00:00

  • Advances in the function and regulation of hydrogenase in the cyanobacterium Synechocystis PCC6803.

    abstract::In order to use cyanobacteria for the biological production of hydrogen, it is important to thoroughly study the function and the regulation of the hydrogen-production machine in order to better understand its role in the global cell metabolism and identify bottlenecks limiting H2 production. Most of the recent advanc...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms151119938

    authors: Cassier-Chauvat C,Veaudor T,Chauvat F

    更新日期:2014-10-31 00:00:00

  • Interferon α Induces the Apoptosis of Cervical Cancer HeLa Cells by Activating both the Intrinsic Mitochondrial Pathway and Endoplasmic Reticulum Stress-Induced Pathway.

    abstract::The interferon α (IFN-α) has been often used as a sensitizing agent for the treatment of various malignancies such as hepatocellular carcinoma, malignant melanoma, and renal cell cancer by promoting the apoptosis of thesetumor cell types. However, the effect of IFN-α on cervical cancer remains unknown. In this study, ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17111832

    authors: Shi WY,Cao C,Liu L

    更新日期:2016-11-02 00:00:00

  • Exceptionally Long-Lived Individuals (ELLI) Demonstrate Slower Aging Rate Calculated by DNA Methylation Clocks as Possible Modulators for Healthy Longevity.

    abstract::Exceptionally long-lived individuals (ELLI) who are the focus of many healthy longevity studies around the globe are now being studied in Israel. The Israeli Multi-Ethnic Centenarian Study (IMECS) cohort is utilized here for assessment of various DNA methylation clocks. Thorough phenotypic characterization and whole b...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21020615

    authors: Gutman D,Rivkin E,Fadida A,Sharvit L,Hermush V,Rubin E,Kirshner D,Sabin I,Dwolatzky T,Atzmon G

    更新日期:2020-01-17 00:00:00

  • Metabolomics of oxidative stress in recent studies of endogenous and exogenously administered intermediate metabolites.

    abstract::Aerobic metabolism occurs in a background of oxygen radicals and reactive oxygen species (ROS) that originate from the incomplete reduction of molecular oxygen in electron transfer reactions. The essential role of aerobic metabolism, the generation and consumption of ATP and other high energy phosphates, sustains a ba...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms12106469

    authors: Liu J,Litt L,Segal MR,Kelly MJ,Pelton JG,Kim M

    更新日期:2011-01-01 00:00:00

  • Dissemination of Genetic Acquisition/Loss Provides a Variety of Quorum Sensing Regulatory Properties in Pseudoalteromonas.

    abstract::A bstract: Quorum sensing (QS) enables single-celled bacteria to communicate with chemical signals in order to synchronize group-level bacterial behavior. Pseudoalteromonas are marine bacteria found in versatile environments, of which QS regulation for their habitat adaptation is extremely fragmentary. To distinguish ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19113636

    authors: Yu Z,Ding Y,Yin J,Yu D,Zhang J,Zhang M,Ding M,Zhong W,Qiu J,Li J

    更新日期:2018-11-18 00:00:00

  • Characterization and comparison of Fumonisin B(1)-protein conjugates by six methods.

    abstract::In order to generate an antibody against a small hapten molecule, the hapten is cross-linked with carrier protein to make it immunogenic. In this study, the hapten (Fumonisin B(1), FB(1)) was coupled to ovalbumin (OVA) and bovine serum albumin (BSA), respectively by a short cross-linker reagent (glutaraldehyde, GA). T...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms13010084

    authors: Wang Y,He CH,Zheng H,Zhang HB

    更新日期:2012-01-01 00:00:00

  • Vitamin D Supplementation Reduces Both Oxidative DNA Damage and Insulin Resistance in the Elderly with Metabolic Disorders.

    abstract:BACKGROUND:Research evidence indicates that vitamin D deficiency is involved in the pathogenesis of insulin resistance (IR) and associated metabolic disorders including hyperglycemia and dyslipidemia. It also suggested that vitamin D deficiency is associated with elevated levels of oxidative stress and its complication...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,随机对照试验

    doi:10.3390/ijms20122891

    authors: Wenclewska S,Szymczak-Pajor I,Drzewoski J,Bunk M,Śliwińska A

    更新日期:2019-06-13 00:00:00

  • Impaired Photic Entrainment of Spontaneous Locomotor Activity in Mice Overexpressing Human Mutant α-Synuclein.

    abstract::Parkinson's disease (PD) is characterized by distinct motor and non-motor symptoms. Sleep disorders are the most frequent and challenging non-motor symptoms in PD patients, and there is growing evidence that they are a consequence of disruptions within the circadian system. PD is characterized by a progressive degener...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19061651

    authors: Pfeffer M,Zimmermann Z,Gispert S,Auburger G,Korf HW,von Gall C

    更新日期:2018-06-03 00:00:00

  • Bacterial growth kinetics under a novel flexible methacrylate dressing serving as a drug delivery vehicle for antiseptics.

    abstract::A flexible methacrylate powder dressing (Altrazeal®) transforms into a wound contour conforming matrix once in contact with wound exudate. We hypothesised that it may also serve as a drug delivery vehicle for antiseptics. The antimicrobial efficacy and influence on bacterial growth kinetics in combination with three a...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms140510582

    authors: Forstner C,Leitgeb J,Schuster R,Dosch V,Kramer A,Cutting KF,Leaper DJ,Assadian O

    更新日期:2013-05-21 00:00:00

  • Hydroxyapatite Formation Coexists with Amyloid-like Self-Assembly of Human Amelogenin.

    abstract::Tooth enamel is formed in an extracellular environment. Amelogenin, the major component in the protein matrix of tooth enamel during the developing stage, could assemble into high molecular weight structures, regulating enamel formation. However, the molecular structure of amelogenin protein assembly at the functional...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21082946

    authors: Zhang J,Wang J,Ma C,Lu J

    更新日期:2020-04-22 00:00:00

  • The Regulations of Deubiquitinase USP15 and Its Pathophysiological Mechanisms in Diseases.

    abstract::Deubiquitinases (DUBs) play a critical role in ubiquitin-directed signaling by catalytically removing the ubiquitin from substrate proteins. Ubiquitin-specific protease 15 (USP15), a member of the largest subfamily of cysteine protease DUBs, contains two conservative cysteine (Cys) and histidine (His) boxes. USP15 har...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18030483

    authors: Chou CK,Chang YT,Korinek M,Chen YT,Yang YT,Leu S,Lin IL,Tang CJ,Chiu CC

    更新日期:2017-02-24 00:00:00

  • Effect of hydraulic activity on crystallization of precipitated calcium carbonate (PCC) for eco-friendly paper.

    abstract::Wt% of aragonite, a CaCO(3) polymorph, increased with higher hydraulic activity ( degrees C) of limestone in precipitated calcium carbonate (PCC) from the lime-soda process (Ca(OH)(2)-NaOH-Na(2)CO(3)). Only calcite, the most stable polymorph, was crystallized at hydraulic activity under 10 degrees C, whereas aragonite...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms10114954

    authors: Kim JA,Han GC,Lim M,You KS,Ryu M,Ahn JW,Fujita T,Kim H

    更新日期:2009-11-11 00:00:00

  • Molecular Mechanisms of Chitosan Interactions with Fungi and Plants.

    abstract::Chitosan is a versatile compound with multiple biotechnological applications. This polymer inhibits clinically important human fungal pathogens under the same carbon and nitrogen status as in blood. Chitosan permeabilises their high-fluidity plasma membrane and increases production of intracellular oxygen species (ROS...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20020332

    authors: Lopez-Moya F,Suarez-Fernandez M,Lopez-Llorca LV

    更新日期:2019-01-15 00:00:00

  • Genetic diversity and population structure of Siberian apricot (Prunus sibirica L.) in China.

    abstract::The genetic diversity and population genetic structure of 252 accessions from 21 Prunus sibirica L. populations were investigated using 10 ISSR, SSR, and SRAP markers. The results suggest that the entire population has a relatively high level of genetic diversity, with populations HR and MY showing very high diversity...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms15010377

    authors: Li M,Zhao Z,Miao X,Zhou J

    更新日期:2013-12-31 00:00:00

  • Heat Shock Proteins: Dynamic Biomolecules to Counter Plant Biotic and Abiotic Stresses.

    abstract::Due to the present scenario of climate change, plants have to evolve strategies to survive and perform under a plethora of biotic and abiotic stresses, which restrict plant productivity. Maintenance of plant protein functional conformation and preventing non-native proteins from aggregation, which leads to metabolic d...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms20215321

    authors: Ul Haq S,Khan A,Ali M,Khattak AM,Gai WX,Zhang HX,Wei AM,Gong ZH

    更新日期:2019-10-25 00:00:00

  • The GATA-Type Transcriptional Factor Are1 Modulates the Expression of Extracellular Proteases and Cellulases in Trichoderma reesei.

    abstract::Trichoderma reesei is a biotechnologically important filamentous fungus with the remarkable ability to secrete large amounts of enzymes, whose production is strongly affected by both the carbon and nitrogen sources. While the carbon metabolism regulators are extensively studied, the regulation of enzyme production by ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20174100

    authors: Qian Y,Sun Y,Zhong L,Sun N,Sheng Y,Qu Y,Zhong Y

    更新日期:2019-08-22 00:00:00

  • Relevance of Electrostatic Charges in Compactness, Aggregation, and Phase Separation of Intrinsically Disordered Proteins.

    abstract::The abundance of intrinsic disorder in the protein realm and its role in a variety of physiological and pathological cellular events have strengthened the interest of the scientific community in understanding the structural and dynamical properties of intrinsically disordered proteins (IDPs) and regions (IDRs). Attemp...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21176208

    authors: Bianchi G,Longhi S,Grandori R,Brocca S

    更新日期:2020-08-27 00:00:00

  • In Silico Finding of Key Interaction Mediated α3β4 and α7 Nicotinic Acetylcholine Receptor Ligand Selectivity of Quinuclidine-Triazole Chemotype.

    abstract::The selective binding of six (S)-quinuclidine-triazoles and their (R)-enantiomers to nicotinic acetylcholine receptor (nAChR) subtypes α3β4 and α7, respectively, were analyzed by in silico docking to provide the insight into the molecular basis for the observed stereospecific subtype discrimination. Homology modeling ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21176189

    authors: Arunrungvichian K,Chongruchiroj S,Sarasamkan J,Schüürmann G,Brust P,Vajragupta O

    更新日期:2020-08-27 00:00:00

  • The Role of Cyclo(His-Pro) in Neurodegeneration.

    abstract::Neurodegenerative diseases may have distinct genetic etiologies and pathological manifestations, yet share common cellular mechanisms underpinning neuronal damage and dysfunction. These cellular mechanisms include excitotoxicity, calcium dysregulation, oxidative damage, ER stress and neuroinflammation. Recent data hav...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms17081332

    authors: Grottelli S,Ferrari I,Pietrini G,Peirce MJ,Minelli A,Bellezza I

    更新日期:2016-08-12 00:00:00

  • Epigenetic Targets for Oligonucleotide Therapies of Pulmonary Arterial Hypertension.

    abstract::Arterial wall remodeling underlies increased pulmonary vascular resistance and right heart failure in pulmonary arterial hypertension (PAH). None of the established vasodilator drug therapies for PAH prevents or reverse established arterial wall thickening, stiffening, and hypercontractility. Therefore, new approaches...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21239222

    authors: Gerthoffer W

    更新日期:2020-12-03 00:00:00

  • Identification and Functional Study of Chitin Metabolism and Detoxification-Related Genes in Glyphodes pyloalis Walker (Lepidoptera: Pyralidae) Based on Transcriptome Analysis.

    abstract::Glyphodes pyloalis Walker (Lepidoptera: Pyralididae) is a serious pest in the sericulture industry, which has caused damage and losses in recent years. With the widespread use of insecticides, the insecticide resistance of G. pyloalis has becomes increasingly apparent. In order to find other effective methods to contr...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21051904

    authors: Shao ZM,Li YJ,Zhang XR,Chu J,Ma JH,Liu ZX,Wang J,Sheng S,Wu FA

    更新日期:2020-03-10 00:00:00

  • Assessment of Genetic Diversity, Population Structure, and Evolutionary Relationship of Uncharacterized Genes in a Novel Germplasm Collection of Diploid and Allotetraploid Gossypium Accessions Using EST and Genomic SSR Markers.

    abstract::This study evaluated the genetic diversity and population structures in a novel cotton germplasm collection comprising 132 diploids, including Glossypium klotzschianum and allotetraploid cotton accessions, including Glossypium barbadense, Glossypium darwinii, Glossypium tomentosum, Glossypium ekmanianum, and Glossypiu...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19082401

    authors: Ditta A,Zhou Z,Cai X,Wang X,Okubazghi KW,Shehzad M,Xu Y,Hou Y,Sajid Iqbal M,Khan MKR,Wang K,Liu F

    更新日期:2018-08-14 00:00:00

  • The Janus Role of Adhesion in Chondrogenesis.

    abstract::Tackling the first stages of the chondrogenic commitment is essential to drive chondrogenic differentiation to healthy hyaline cartilage and minimize hypertrophy. During chondrogenesis, the extracellular matrix continuously evolves, adapting to the tissue adhesive requirements at each stage. Here, we take advantage of...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21155269

    authors: Casanellas I,Lagunas A,Vida Y,Pérez-Inestrosa E,Andrades JA,Becerra J,Samitier J

    更新日期:2020-07-24 00:00:00