Open chromatin dynamics in prosensory cells of the embryonic mouse cochlea.

Abstract:

:Hearing loss is often due to the absence or the degeneration of hair cells in the cochlea. Understanding the mechanisms regulating the generation of hair cells may therefore lead to better treatments for hearing disorders. To elucidate the transcriptional control mechanisms specifying the progenitor cells (i.e. prosensory cells) that generate the hair cells and support cells critical for hearing function, we compared chromatin accessibility using ATAC-seq in sorted prosensory cells (Sox2-EGFP+) and surrounding cells (Sox2-EGFP-) from E12, E14.5 and E16 cochlear ducts. In Sox2-EGFP+, we find greater accessibility in and near genes restricted in expression to the prosensory region of the cochlear duct including Sox2, Isl1, Eya1 and Pou4f3. Furthermore, we find significant enrichment for the consensus binding sites of Sox2, Six1 and Gata3-transcription factors required for prosensory development-in the open chromatin regions. Over 2,200 regions displayed differential accessibility with developmental time in Sox2-EGFP+ cells, with most changes in the E12-14.5 window. Open chromatin regions detected in Sox2-EGFP+ cells map to over 48,000 orthologous regions in the human genome that include regions in genes linked to deafness. Our results reveal a dynamic landscape of open chromatin in prosensory cells with potential implications for cochlear development and disease.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Wilkerson BA,Chitsazan AD,VandenBosch LS,Wilken MS,Reh TA,Bermingham-McDonogh O

doi

10.1038/s41598-019-45515-2

subject

Has Abstract

pub_date

2019-06-21 00:00:00

pages

9060

issue

1

issn

2045-2322

pii

10.1038/s41598-019-45515-2

journal_volume

9

pub_type

杂志文章
  • Advanced P Wave Detection in Ecg Signals During Pathology: Evaluation in Different Arrhythmia Contexts.

    abstract::Reliable P wave detection is necessary for accurate and automatic electrocardiogram (ECG) analysis. Currently, methods for P wave detection in physiological conditions are well-described and efficient. However, methods for P wave detection during pathology are not generally found in the literature, or their performanc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-55323-3

    authors: Maršánová L,Němcová A,Smíšek R,Vítek M,Smital L

    更新日期:2019-12-13 00:00:00

  • PKC-ѳ is dispensable for OX40L-induced TCR-independent Treg proliferation but contributes by enabling IL-2 production from effector T-cells.

    abstract::We have previously shown that OX40L/OX40 interaction is critical for TCR-independent selective proliferation of Foxp3+ Tregs, but not Foxp3- effector T-cells (Teff), when CD4+ T-cells are co-cultured with GM-CSF derived bone marrow dendritic cells (G-BMDCs). Events downstream of OX40L/OX40 interaction in Tregs respons...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05254-8

    authors: Alharshawi K,Marinelarena A,Kumar P,El-Sayed O,Bhattacharya P,Sun Z,Epstein AL,Maker AV,Prabhakar BS

    更新日期:2017-07-26 00:00:00

  • High-speed and Large-scale Privacy Amplification Scheme for Quantum Key Distribution.

    abstract::State-of-art quantum key distribution (QKD) systems are performed with several GHz pulse rates, meanwhile privacy amplification (PA) with large scale inputs has to be performed to generate the final secure keys with quantified security. In this paper, we propose a fast Fourier transform (FFT) enhanced high-speed and l...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50290-1

    authors: Tang BY,Liu B,Zhai YP,Wu CQ,Yu WR

    更新日期:2019-10-31 00:00:00

  • Contactless Fluid Manipulation in Air: Droplet Coalescence and Active Mixing by Acoustic Levitation.

    abstract::Acoustic manipulation by an ultrasonic phased array provides an entirely new approach to processes such as coalescence, mixing, separation, and evaporation occurring in the generation of new materials, physical property measurement, the biomedical industry, etc. However, to date, ultrasonic phased arrays have not been...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28451-5

    authors: Watanabe A,Hasegawa K,Abe Y

    更新日期:2018-07-05 00:00:00

  • New Insight into Mixing Fluoride and Chloride in Bioactive Silicate Glasses.

    abstract::Adding fluoride into bioactive glasses leads to fluorapatite formation and a decrease in glass transition temperature. Recently, chloride has been introduced into glasses as an alternative to fluoride. The presence of the large chloride ion lowers glass crystallisation tendency and increases glass molar volume, which ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-19544-2

    authors: Chen X,Chen X,Pedone A,Apperley D,Hill RG,Karpukhina N

    更新日期:2018-01-22 00:00:00

  • An Investigation of the Behavior of Solvent based Polycaprolactone ink for Material Jetting.

    abstract::An initial study of processing bioresorbable polycaprolactone (PCL) through material jetting was conducted using a Fujifilm Dimatix DMP-2830 material printer. The aim of this work was to investigate a potential solvent based method of jetting polycaprolactone. Several solvents were used to prepare a PCL solvent based ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20852

    authors: He Y,Wildman RD,Tuck CJ,Christie SD,Edmondson S

    更新日期:2016-02-12 00:00:00

  • Nesfatin-1 in the dorsal raphe nucleus influences visceral sensitivity via 5-HT neurons in male maternally separated rats.

    abstract::Nesfatin-1, a satiety molecule processed from nucleobindin2 (NUCB2), is implicated in visceral hypersensitivity in rats and colocalized with 5-hydroxytryptamine (5-HT) in the dorsal raphe nucleus (DRN). Maternal separation (MS) in rats contributes to visceral hypersensitivity via elevated expression of 5-HT in the DRN...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27592-x

    authors: Zhang HA,Sang N,Ge X,Huang Q,Li XL,Sha J

    更新日期:2018-06-19 00:00:00

  • Emission of direct-gap band in germanium with Ge-GeSn layers on one-dimensional structure.

    abstract::In our experiment, it was observed that the emission of direct-gap band in germanium with Ge-GeSn layers on one-dimensional (1D) structure. The results of experiment and calculation demonstrate that the uniaxial tensile strain in the (111) and (110) direction can efficiently transform Ge to a direct bandgap material w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24802

    authors: Huang ZM,Huang WQ,Liu SR,Dong TG,Wang G,Wu XK,Qin CJ

    更新日期:2016-04-21 00:00:00

  • Facile synthesis, microstructure and photophysical properties of core-shell nanostructured (SiCN)/BN nanocomposites.

    abstract::Increasing structural complexity at nanoscale can permit superior control over photophysical properties in the precursor-derived semiconductors. We demonstrate here the synthesis of silicon carbonitride (SiCN)/boron nitride (BN) nanocomposites via a polymer precursor route wherein the cobalt polyamine complexes used a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39866

    authors: Zhang Q,Jia D,Yang Z,Cai D,Laine RM,Li Q,Zhou Y

    更新日期:2017-01-13 00:00:00

  • Ecological niche modeling of Astragalus membranaceus var. mongholicus medicinal plants in Inner Mongolia, China.

    abstract::Radix Astragali is commonly used in traditional Chinese medicine, and its quality is closely related to ecological factors, such as climate and soil, in the production area. To provide high-quality Radix Astragali to Chinese and foreign markets, we used maximum entropy model and statistical analysis method, combined w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69391-3

    authors: Yang M,Li Z,Liu L,Bo A,Zhang C,Li M

    更新日期:2020-07-27 00:00:00

  • Association between preterm brain injury and exposure to chorioamnionitis during fetal life.

    abstract::Preterm infants are susceptible to inflammation-induced white matter injury but the exposures that lead to this are uncertain. Histologic chorioamnionitis (HCA) reflects intrauterine inflammation, can trigger a fetal inflammatory response, and is closely associated with premature birth. In a cohort of 90 preterm infan...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37932

    authors: Anblagan D,Pataky R,Evans MJ,Telford EJ,Serag A,Sparrow S,Piyasena C,Semple SI,Wilkinson AG,Bastin ME,Boardman JP

    更新日期:2016-12-01 00:00:00

  • Central transthyretin acts to decrease food intake and body weight.

    abstract::Transthyretin (TTR) is a blood and cerebrospinal fluid transporter of thyroxine and retinol. Gene expression profiling revealed an elevation of Ttr expression in the dorsomedial hypothalamus (DMH) of rats with exercise-induced anorexia, implying that central TTR may also play a functional role in modulating food intak...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24238

    authors: Zheng F,Kim YJ,Moran TH,Li H,Bi S

    更新日期:2016-04-07 00:00:00

  • Retrieving transient conformational molecular structure information from inner-shell photoionization of laser-aligned molecules.

    abstract::We discuss a scheme to retrieve transient conformational molecular structure information using photoelectron angular distributions (PADs) that have averaged over partial alignments of isolated molecules. The photoelectron is pulled out from a localized inner-shell molecular orbital by an X-ray photon. We show that a t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23655

    authors: Wang X,Le AT,Yu C,Lucchese RR,Lin CD

    更新日期:2016-03-30 00:00:00

  • Synthesis, properties and surface self-assembly of a pentanuclear cluster based on the new π-conjugated TTF-triazole ligand.

    abstract::The new π-extended redox-active ligand with both TTF and triazole units, 6-(4,5-bis(propylthio)-1,3-dithiol-2-ylidene)-1H-[1,3]dithiolo[4',5':4,5]benzo [1,2-d] [1-3]triazole, has been successfully prepared. Based on the versatile ligand and Cu(tta)2 precursors (tta(-) = 4,4,4-trifluoro-1-(thiophen-2-yl)butane-1,3-dion...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25544

    authors: Cui L,Geng YF,Leong CF,Ma Q,D'Alessandro DM,Deng K,Zeng QD,Zuo JL

    更新日期:2016-05-06 00:00:00

  • A Multi-scale Biophysical Approach to Develop Structure-Property Relationships in Oral Biofilms.

    abstract::Over the last 5-10 years, optical coherence tomography (OCT) and atomic force microscopy (AFM) have been individually applied to monitor the morphological and mechanical properties of various single-species biofilms respectively. This investigation looked to combine OCT and AFM as a multi-scale approach to understand ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23798-1

    authors: Pattem J,Davrandi M,Aguayo S,Allan E,Spratt D,Bozec L

    更新日期:2018-04-09 00:00:00

  • A pilot study on transient ischemic stroke induced with endothelin-1 in the rhesus monkeys.

    abstract::Endothelin-1 (ET-1), a vasoconstrictor, has recently been used to induce focal ischemia in rodents and marmoset monkeys. The rhesus monkey, however, has numerous advantages to the rodent and marmoset that make it a superior and irreplaceable animal model for studying stroke in the brain. In the present study, after ma...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45097

    authors: Dai P,Huang H,Zhang L,He J,Zhao X,Yang F,Zhao N,Yang J,Ge L,Lin Y,Yu H,Wang J

    更新日期:2017-03-30 00:00:00

  • Heart rate variability as an independent predictor for 8-year mortality among chronic hemodialysis patients.

    abstract::The repeated measurements of heart rate variability (HRV) is more relevant than a single HRV measurement in predicting patient prognosis but is less addressed previously. This prospective study aimed to investigate the association between repeated measurements of HRV and long-term mortality in chronic hemodialysis pat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57792-3

    authors: Chang YM,Huang YT,Chen IL,Yang CL,Leu SC,Su HL,Kao JL,Tsai SC,Jhen RN,Shiao CC

    更新日期:2020-01-21 00:00:00

  • Publisher Correction: A humanized mouse model identifies key amino acids for low immunogenicity of H7N9 vaccines.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-019-50828-3

    authors: Wada Y,Nithichanon A,Nobusawa E,Moise L,Martin WD,Yamamoto N,Terahara K,Hagiwara H,Odagiri T,Tashiro M,Lertmemongkolchai G,Takeyama H,De Groot AS,Ato M,Takahashi Y

    更新日期:2019-10-08 00:00:00

  • Sex-Related Differences in Impact on Safety of Pharmacogenetic Profile for Colon Cancer Patients Treated with FOLFOX-4 or XELOX Adjuvant Chemotherapy.

    abstract::Polymorphisms contribute to inter-individual differences and show a promising predictive role for chemotherapy-related toxicity in colon cancer (CC). TOSCA is a multicentre, randomized, non-inferiority, phase III study conducted in high-risk stage II/stage III CC patients treated with 6 vs 3 months of FOLFOX-4 or XELO...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-019-47627-1

    authors: Ruzzo A,Graziano F,Galli F,Galli F,Rulli E,Lonardi S,Ronzoni M,Massidda B,Zagonel V,Pella N,Mucciarini C,Labianca R,Ionta MT,Bagaloni I,Veltri E,Sozzi P,Barni S,Ricci V,Foltran L,Nicolini M,Biondi E,Bramati A,

    更新日期:2019-08-08 00:00:00

  • Super-resolution mapping of glutamate receptors in C. elegans by confocal correlated PALM.

    abstract::Photoactivated localization microscopy (PALM) is a super-resolution imaging technique based on the detection and subsequent localization of single fluorescent molecules. PALM is therefore a powerful tool in resolving structures and putative interactions of biomolecules at the ultimate analytical detection limit. Howev...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13532

    authors: Vangindertael J,Beets I,Rocha S,Dedecker P,Schoofs L,Vanhoorelbeke K,Hofkens J,Mizuno H

    更新日期:2015-09-01 00:00:00

  • Solvodynamic Printing As A High Resolution Printing Method.

    abstract::Printing techniques are becoming increasingly prevalent in modern manufacturing. However, its biggest drawback is the limit in printing resolution. In this paper, we present solvodynamic printing as a novel printing system which aims to improve print resolution by incorporating an additional immiscible carrier solvent...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47105-8

    authors: Liu WC,Watt AAR

    更新日期:2019-07-24 00:00:00

  • The exercise sex gap and the impact of the estrous cycle on exercise performance in mice.

    abstract::Exercise physiology is different in males and females. Females are poorly studied due to the complexity of the estrous cycle and this bias has created an exercise sex gap. Here, we evaluated the impact of sexual dimorphism and of the estrous cycle on muscle strength and running power of C57BL/6 mice. Like men, male mi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29050-0

    authors: Aguiar AS Jr,Speck AE,Amaral IM,Canas PM,Cunha RA

    更新日期:2018-07-16 00:00:00

  • Precision and safety of Multilevel Cervical Transpedicular Screw Fixation with 3D Patient-Specific Guides; A Cadaveric Study.

    abstract::The aim is to design a patient-specific instrument (PSI) for multilevel cervical pedicle screw placement from C2 to C7, as well as verifying reliability and reproducibility. Computed tomography (CT) scans were obtained from 7 cadaveric cervical spines. Using Mimics software, semiautomatic segmentation was performed fo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51936-w

    authors: Sallent A,Ramírez M,Catalá J,Rodríguez-Baeza A,Bagó J,de Albert M,Vélez R

    更新日期:2019-10-30 00:00:00

  • The diet of the first Europeans from Atapuerca.

    abstract::Hominin dietary specialization is crucial to understanding the evolutionary changes of craniofacial biomechanics and the interaction of food processing methods' effects on teeth. However, the diet-related dental wear processes of the earliest European hominins remain unknown because most of the academic attention has ...

    journal_title:Scientific reports

    pub_type: 历史文章,杂志文章

    doi:10.1038/srep43319

    authors: Pérez-Pérez A,Lozano M,Romero A,Martínez LM,Galbany J,Pinilla B,Estebaranz-Sánchez F,Bermúdez de Castro JM,Carbonell E,Arsuaga JL

    更新日期:2017-02-27 00:00:00

  • Oral administration of N-acetyl cysteine prevents osteoarthritis development and progression in a rat model.

    abstract::The number of osteoarthritis patients is increasing with the rise in the number of elderly people in developed countries. Osteoarthritis, which causes joint pain and deformity leading to loss of activities of daily living, is often treated surgically. Here we show that mechanical stress promotes accumulation of reacti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-55297-2

    authors: Kaneko Y,Tanigawa N,Sato Y,Kobayashi T,Nakamura S,Ito E,Soma T,Miyamoto K,Kobayashi S,Harato K,Matsumoto M,Nakamura M,Niki Y,Miyamoto T

    更新日期:2019-12-10 00:00:00

  • Plasmid-based and -free methods using CRISPR/Cas9 system for replacement of targeted genes in Colletotrichum sansevieriae.

    abstract::The CRISPR-Cas9 system has a potential for wide application in organisms that particularly present low homologous integration rates. In this study, we developed three different methods using this system to replace a gene through homology-directed repair in the plant pathogenic fungus Colletotrichum sansevieriae, which...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-55302-8

    authors: Nakamura M,Okamura Y,Iwai H

    更新日期:2019-12-12 00:00:00

  • Wave Manipulations by Coherent Perfect Channeling.

    abstract::We show that through the wave energy conserved and reversible process of coherent interactions of scalar waves in a multi-channel system joint by a common junction, it is possible to generate outgoing waves only in certain channels by controlling the incoming waves. We refer to such processes as coherent perfect chann...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14422-9

    authors: Zhang X,Meng C,Yang Z

    更新日期:2017-10-24 00:00:00

  • Prognostic Significance of Infarct Size and Location: The Case of Insular Stroke.

    abstract::The prognostic relevance of strokes in different locations is debated. For example, insular strokes have been associated with increased mortality, but this association could reflect their greater severity. In two independent cohorts of patients with supratentorial ischemic stroke (n = 90 and 105), we studied the progn...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27883-3

    authors: Laredo C,Zhao Y,Rudilosso S,Renú A,Pariente JC,Chamorro Á,Urra X

    更新日期:2018-06-22 00:00:00

  • Fewer clouds in the Mediterranean: consistency of observations and climate simulations.

    abstract::Clouds play a major role in the climate system, but large uncertainties remain about their decadal variations. Here we report a widespread decrease in cloud cover since the 1970 s over the Mediterranean region, in particular during the 1970 s-1980 s, especially in the central and eastern areas and during springtime. C...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41475

    authors: Sanchez-Lorenzo A,Enriquez-Alonso A,Calbó J,González JA,Wild M,Folini D,Norris JR,Vicente-Serrano SM

    更新日期:2017-02-02 00:00:00

  • Yields and Nutritional of Greenhouse Tomato in Response to Different Soil Aeration Volume at two depths of Subsurface drip irrigation.

    abstract::This study investigated the effects of 4 aeration levels (varied by injection of air to the soil through subsurface irrigation lines) at two subsurface irrigation line depths (15 and 40 cm) on plant growth, yield and nutritional quality of greenhouse tomato. In all experiments, fruit number, width and length, yield, v...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39307

    authors: Li Y,Niu W,Dyck M,Wang J,Zou X

    更新日期:2016-12-20 00:00:00