Novel diversity within marine Mamiellophyceae (Chlorophyta) unveiled by metabarcoding.

Abstract:

:Mamiellophyceae (unicellular green algae) are a key phytoplankton group in coastal waters. Although extensively studied over the last 20 years, the overall oceanic distribution of the major species/clades is still poorly known. To address this problem, we analyzed the 2014 Ocean Sampling Day (OSD) metabarcoding dataset providing sequences from the V4 hypervariable region of the 18S rRNA gene for 157 samples collected at 143 mostly coastal stations. Mamiellophyceae were found at nearly all OSD stations and represented 55% of the green microalgae (Chlorophyta) reads. We performed phylogenetic analyses of unique OSD metabarcodes (amplicon single variants, ASVs) and GenBank reference sequences from cultures and from the environment, focusing on the four most represented genera: Ostreococcus (45% of the Mamiellophyceae reads), Micromonas (34%), Bathycoccus (10%) and Mantoniella (8.7%). These analyses uncovered novel diversity within each genus except Bathycoccus. In Ostreococcus, a new clade (E) was the second most represented clade after Ostreococcus "lucimarinus". Micromonas could be separated into nine clades, exceeding the six species and candidate species already described. Finally, we found two new environmental clades within Mantoniella. Each Mamiellophyceae clade had a specific distribution in the OSD dataset suggesting that they are adapted to different ecological niches.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Tragin M,Vaulot D

doi

10.1038/s41598-019-41680-6

subject

Has Abstract

pub_date

2019-03-26 00:00:00

pages

5190

issue

1

issn

2045-2322

pii

10.1038/s41598-019-41680-6

journal_volume

9

pub_type

杂志文章
  • Impact of Hepatitis C Treatment as Prevention for People Who Inject Drugs is sensitive to contact network structure.

    abstract::Treatment as Prevention (TasP) using directly-acting antivirals has been advocated for Hepatitis C Virus (HCV) in people who inject drugs (PWID), but treatment is expensive and TasP's effectiveness is uncertain. Previous modelling has assumed a homogeneously-mixed population or a static network lacking turnover in the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01862-6

    authors: Metzig C,Surey J,Francis M,Conneely J,Abubakar I,White PJ

    更新日期:2017-05-12 00:00:00

  • Deficient Vitamin E Uptake During Development Impairs Neural Tube Closure in Mice Lacking Lipoprotein Receptor SR-BI.

    abstract::SR-BI is the main receptor for high density lipoproteins (HDL) and mediates the bidirectional transport of lipids, such as cholesterol and vitamin E, between these particles and cells. During early development, SR-BI is expressed in extraembryonic tissue, specifically in trophoblast giant cells in the parietal yolk sa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05422-w

    authors: Santander N,Lizama C,Parga MJ,Quiroz A,Pérez D,Echeverría G,Ulloa L,Palma V,Rigotti A,Busso D

    更新日期:2017-07-12 00:00:00

  • PRL3 phosphatase active site is required for binding the putative magnesium transporter CNNM3.

    abstract::The phosphatases of regenerating liver (PRLs) are involved in tumorigenesis and metastatic cancer yet their cellular function remains unclear. Recent reports have shown PRL phosphatases bind tightly to the CNNM family of membrane proteins to regulate magnesium efflux. Here, we characterize the interactions between the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00147-2

    authors: Zhang H,Kozlov G,Li X,Wu H,Gulerez I,Gehring K

    更新日期:2017-03-03 00:00:00

  • Association between maternal blood lipids levels during pregnancy and risk of small-for-gestational-age infants.

    abstract::Dyslipidemia in pregnancy are associated with risk of adverse outcomes. As an adverse pregnancy outcome, small-for-gestational-age has been extensively studied in Western countries. However, similar studies have rarely been conducted in Asian countries. Data were derived from 5695 pairs of non-diabetic mothers and neo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76845-1

    authors: Chen Q,Chen H,Xi F,Sagnelli M,Zhao B,Chen Y,Yang M,Xu D,Jiang Y,Chen G,Luo Q

    更新日期:2020-11-16 00:00:00

  • Plant pathogen responses to Late Pleistocene and Holocene climate change in the central Atacama Desert, Chile.

    abstract::Future climate change has the potential to alter the distribution and prevalence of plant pathogens, which may have significant implications for both agricultural crops and natural plant communities. However, there are few long-term datasets against which modelled predictions of pathogen responses to climate change ca...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35299-2

    authors: Wood JR,Díaz FP,Latorre C,Wilmshurst JM,Burge OR,Gutiérrez RA

    更新日期:2018-11-21 00:00:00

  • Evidence of motor injury due to damaged corticospinal tract following acute hemorrhage in the basal ganglia region.

    abstract::The integrity of the corticospinal tract (CST) is significantly affected following basal ganglia haemorrhage. We aimed to assess the local features of CST and to effectively predict motor function by diffusion characteristics of CST in patients with motor injury following acute haemorrhage in the acute basal ganglia r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-73305-8

    authors: Li J,Wei XH,Liu YK,Chen LS,Zhu ZQ,Hou SY,Fang XK,Wang ZQ

    更新日期:2020-10-01 00:00:00

  • Health-related quality of life amongst people diagnosed with abdominal aortic aneurysm and peripheral artery disease and the effect of fenofibrate.

    abstract::The aims of this study were, firstly, to assess the effect of concurrent peripheral artery disease (PAD) on the health-related quality of life (QOL) of people diagnosed with a small abdominal aortic aneurysm (AAA); and secondly, to test whether the peroxisome proliferator-activated receptor α agonist fenofibrate impro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-71454-4

    authors: Golledge J,Pinchbeck J,Rowbotham SE,Yip L,Jenkins JS,Quigley F,Moxon JV

    更新日期:2020-09-03 00:00:00

  • Specific binding of Bacillus thuringiensis Cry1Ea toxin, and Cry1Ac and Cry1Fa competition analyses in Anticarsia gemmatalis and Chrysodeixis includens.

    abstract::Anticarsia gemmatalis (velvetbean caterpillar) and Chrysodeixis includens (soybean looper) are two important defoliation pests of soybeans. In the present study, we have investigated the susceptibility and brush border membrane-binding properties of both species to Bacillus thuringiensis Cry1Ea toxin. Bioassays perfor...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54850-3

    authors: Bel Y,Zack M,Narva K,Escriche B

    更新日期:2019-12-03 00:00:00

  • Reduction in Urinary Chemokine (C-C Motif) Ligand 2 (CCL2) After Surgery-Induced Weight Loss.

    abstract::Kidney dysfunction, a deleterious effect of obesity, is now recognized as a relevant health risk. Chemokine (C-C Motif) Ligand 2 (CCL2) is one of the critical chemokines that play a vital role in the development of obesity-related metabolic disease. We aim to measure the changes in urinary CCL2 in our patients before ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57763-8

    authors: Said SB,Loo GH,Kosai NR,Rajan R,Mohd R,Wahab AA,Shah SA

    更新日期:2020-01-21 00:00:00

  • Circulating miRNAs as molecular markers of occupational grain dust exposure.

    abstract::Dust from grain and feed production may cause adverse health effects in exposed workers. In this study we explored circulating miRNAs as potential biomarkers of occupational grain dust exposure. Twenty-two serum miRNAs were analyzed in 44 grain dust exposed workers and 22 controls. Exposed workers had significantly up...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-68296-5

    authors: Straumfors A,Duale N,Foss OAH,Mollerup S

    更新日期:2020-07-09 00:00:00

  • Genetic and Neurobiological Analyses of the Noradrenergic-like System in Vulnerability to Sugar Overconsumption Using a Drosophila Model.

    abstract::Regular overconsumption of sugar is associated with obesity and type-2 diabetes, but how genetic factors contribute to variable sugar preferences and intake levels remains mostly unclear. Here we provide evidence for the usefulness of a Drosophila larva model to investigate genetic influence on vulnerability to sugar ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17760-w

    authors: Branch A,Zhang Y,Shen P

    更新日期:2017-12-15 00:00:00

  • Early weaning increases aggression and stereotypic behaviour in cats.

    abstract::Behaviour problems are common in companion felines, and problematic behaviour may be a sign of chronic stress. In laboratory animals, early weaning increases the risk for aggression, anxiety, and stereotypic behaviour. However, very few studies have focused on early weaning in one of the world's most popular pets, the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-11173-5

    authors: Ahola MK,Vapalahti K,Lohi H

    更新日期:2017-09-04 00:00:00

  • HDAC4 degradation by combined TRAIL and valproic acid treatment induces apoptotic cell death of TRAIL-resistant head and neck cancer cells.

    abstract::Although TRAIL can directly induce cell death in some cancer cells, it appears that TRAIL resistance exists in many cancers. This study focuses on anti-cancer drugs for TRAIL-resistant head and neck cancer (HNC) to provide further progress toward effective cancer therapy. Results indicate in TRAIL-resistant HNC cells,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31039-8

    authors: Lee BS,Kim YS,Kim HJ,Kim DH,Won HR,Kim YS,Kim CH

    更新日期:2018-08-21 00:00:00

  • Seabird distribution patterns observed with fishing vessel's radar reveal previously undescribed sub-meso-scale clusters.

    abstract::Seabirds are known to concentrate on prey patches or at predators aggregations standing for potential feeding opportunities. They may search for prey using olfaction or by detecting visually feeding con-specifics and sub-surface predators, or even boats. Thus, they might form a foraging network. We hypothesized that c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07480-6

    authors: Assali C,Bez N,Tremblay Y

    更新日期:2017-08-04 00:00:00

  • Diacylglycerol lipase α manipulation reveals developmental roles for intercellular endocannabinoid signaling.

    abstract::Endocannabinoids are small signaling lipids, with 2-arachidonoylglycerol (2-AG) implicated in modulating axonal growth and synaptic plasticity. The concept of short-range extracellular signaling by endocannabinoids is supported by the lack of trans-synaptic 2-AG signaling in mice lacking sn-1-diacylglycerol lipases (D...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02093

    authors: Keimpema E,Alpár A,Howell F,Malenczyk K,Hobbs C,Hurd YL,Watanabe M,Sakimura K,Kano M,Doherty P,Harkany T

    更新日期:2013-01-01 00:00:00

  • Internal Motion Estimation by Internal-external Motion Modeling for Lung Cancer Radiotherapy.

    abstract::The aim of this study is to develop an internal-external correlation model for internal motion estimation for lung cancer radiotherapy. Deformation vector fields that characterize the internal-external motion are obtained by respectively registering the internal organ meshes and external surface meshes from the 4DCT i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22023-3

    authors: Chen H,Zhong Z,Yang Y,Chen J,Zhou L,Zhen X,Gu X

    更新日期:2018-02-27 00:00:00

  • Characterization of a novel reassortant influenza A virus (H2N2) from a domestic duck in Eastern China.

    abstract::While H2N2 viruses have been sporadically isolated from wild and domestic birds, H2N2 viruses have not been detected among human populations since 1968. Should H2N2 viruses adapt to domestic poultry they may pose a risk of infection to people, as most anyone born after 1968 would likely be susceptible to their infecti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07588

    authors: Ma MJ,Yang XX,Qian YH,Zhao SY,Hua S,Wang TC,Chen SH,Ma GY,Sang XY,Liu LN,Wu AP,Jiang TJ,Gao YW,Gray GC,Zhao T,Ling X,Wang JL,Lu B,Qian J,Cao WC

    更新日期:2014-12-23 00:00:00

  • The Arabidopsis defensin gene, AtPDF1.1, mediates defence against Pectobacterium carotovorum subsp. carotovorum via an iron-withholding defence system.

    abstract::Plant defensins (PDFs) are cysteine-rich peptides that have a range of biological functions, including defence against fungal pathogens. However, little is known about their role in defence against bacteria. In this study, we showed that the protein encoded by ARABIDOPSIS THALIANA PLANT DEFENSIN TYPE 1.1 (AtPDF1.1) is...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08497-7

    authors: Hsiao PY,Cheng CP,Koh KW,Chan MT

    更新日期:2017-08-23 00:00:00

  • The Microbiome of Aseptically Collected Human Breast Tissue in Benign and Malignant Disease.

    abstract::Globally breast cancer is the leading cause of cancer death among women. The breast consists of epithelium, stroma and a mucosal immune system that make up a complex microenvironment. Growing awareness of the role of microbes in the microenvironment recently has led to a series of findings important for human health. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30751

    authors: Hieken TJ,Chen J,Hoskin TL,Walther-Antonio M,Johnson S,Ramaker S,Xiao J,Radisky DC,Knutson KL,Kalari KR,Yao JZ,Baddour LM,Chia N,Degnim AC

    更新日期:2016-08-03 00:00:00

  • Bromide (Br)--Based Synthesis of Ag Nanocubes with High-Yield.

    abstract::The geometry of metal nanoparticles greatly affects the properties of the localized surface plasmon resonance and surface-enhanced Raman scattering. The synthesis of metal nanoparticles with controllable geometry has thus attracted extensive attentions. In this work, we report a modified polyol synthesis approach of s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10772

    authors: Wu F,Wang W,Xu Z,Li F

    更新日期:2015-06-09 00:00:00

  • Role of Ran-regulated nuclear-cytoplasmic trafficking of pVHL in the regulation of microtubular stability-mediated HIF-1α in hypoxic cardiomyocytes.

    abstract::Our previous study suggested that microtubule network alteration affects the process of glycolysis in cardiomyocytes (CMs) via the regulation of hypoxia-inducible factor (HIF)-1α during the early stages of hypoxia. However, little is known regarding the underlying mechanisms of microtubule network alteration-induced c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09193

    authors: Jiang X,Zhang D,Zhang H,Huang Y,Teng M

    更新日期:2015-03-17 00:00:00

  • FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads.

    abstract::We have developed a computational method that counts the frequencies of unique k-mers in FASTQ-formatted genome data and uses this information to infer the genotypes of known variants. FastGT can detect the variants in a 30x genome in less than 1 hour using ordinary low-cost server hardware. The overall concordance wi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02487-5

    authors: Pajuste FD,Kaplinski L,Möls M,Puurand T,Lepamets M,Remm M

    更新日期:2017-05-31 00:00:00

  • Autologous transplantation of GDNF-expressing mesenchymal stem cells protects against MPTP-induced damage in cynomolgus monkeys.

    abstract::Glial cell-derived neurotrophic factor (GDNF) has shown beneficial effects in models of Parkinson's disease. The mild results observed in the double-blind clinical trial by intraputamenal infusion of recombinant GDNF proteins warrant a search for alternative delivery methods. In this study, we investigated the functio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02786

    authors: Ren Z,Wang J,Wang S,Zou C,Li X,Guan Y,Chen Z,Zhang YA

    更新日期:2013-09-27 00:00:00

  • Surviving salt fluctuations: stress and recovery in Halobacterium salinarum, an extreme halophilic Archaeon.

    abstract::Halophilic proteins subjected to below about 15% salt in vitro denature through misfolding, aggregation and/or precipitation. Halobacteria, however, have been detected in environments of fluctuating salinity such as coastal salterns and even around fresh water springs in the depths of the Dead Sea. In order to identif...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-59681-1

    authors: Vauclare P,Natali F,Kleman JP,Zaccai G,Franzetti B

    更新日期:2020-02-24 00:00:00

  • Microbial copper reduction method to scavenge anthropogenic radioiodine.

    abstract::Unexpected reactor accidents and radioisotope production and consumption have led to a continuous increase in the global-scale contamination of radionuclides. In particular, anthropogenic radioiodine has become critical due to its highly volatile mobilization and recycling in global environments, resulting in widespre...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28113

    authors: Lee SY,Lee JY,Min JH,Kim SS,Baik MH,Chung SY,Lee M,Lee Y

    更新日期:2016-06-17 00:00:00

  • Effects of Nonsteroidal Anti-Inflammatory Drugs as Patient Controlled Analgesia on Early Bowel Function Recovery after Radical Cystectomy.

    abstract::This study aimed to evaluate the effects of ketorolac, a commonly used non-steroidal anti-inflammatory drug (NSAID) as patient controlled intravenous infusion analgesia (PCIA) for the patients underwent radical cystectomy (RC) due to bladder cancer regarding post-operational indices of recovery. Total seventy patients...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/s41598-018-22677-z

    authors: Yu YD,Hwang JH,Seo YE,Song BD,Jung YS,Lee DH,Hong SK,Byun SS,Lee SE,Oh JJ

    更新日期:2018-03-15 00:00:00

  • Insecticide resistance and nutrition interactively shape life-history parameters in German cockroaches.

    abstract::Fitness-related costs of evolving insecticide resistance have been reported in a number of insect species, but the interplay between evolutionary adaptation to insecticide pressure and variable environmental conditions has received little attention. We provisioned nymphs from three German cockroach (Blattella germanic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28731

    authors: Jensen K,Ko AE,Schal C,Silverman J

    更新日期:2016-06-27 00:00:00

  • Narrow band perfect absorber for maximum localized magnetic and electric field enhancement and sensing applications.

    abstract::Plasmonics offer an exciting way to mediate the interaction between light and matter, allowing strong field enhancement and confinement, large absorption and scattering at resonance. However, simultaneous realization of ultra-narrow band perfect absorption and electromagnetic field enhancement is challenging due to th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24063

    authors: Yong Z,Zhang S,Gong C,He S

    更新日期:2016-04-05 00:00:00

  • Chemical genetic approach using β-rubromycin reveals that a RIO kinase-like protein is involved in morphological development in Phytophthora infestans.

    abstract::To characterize the molecular mechanisms underlying life-stage transitions in Phytophthora infestans, we initiated a chemical genetics approach by screening for a stage-specific inhibitor of morphological development from microbial culture extracts prepared mostly from actinomycetes from soil in Japan. Of the more tha...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79326-7

    authors: Tani S,Nishio N,Kai K,Hagiwara D,Ogata Y,Tojo M,Sumitani JI,Judelson HS,Kawaguchi T

    更新日期:2020-12-18 00:00:00

  • Identification of two novel Rhizoctonia solani-inducible cis-acting elements in the promoter of the maize gene, GRMZM2G315431.

    abstract::Plants are continuously exposed to myriad pathogen stresses. However, the molecular mechanisms by which these stress signals are perceived and transduced are poorly understood. In this study, the maize gene GRMZM2G315431 was identified to be highly inducible by Rhizoctonia solani infection, suggesting that the promote...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42059

    authors: Li N,Chen J,Yang F,Wei S,Kong L,Ding X,Chu Z

    更新日期:2017-02-06 00:00:00