Metabolic profiling associated with autophagy of human placenta-derived mesenchymal stem cells by chemical isotope labeling LC-MS.

Abstract:

:Autophagy has been reported to have a pivotal role in maintaining stemness, regulating immunomodulation and enhancing the survival of mesenchymal stem cells (MSCs). However, the effect of autophagy on MSC metabolism is largely unknown. Here, we report a workflow for examining the impact of autophagy on human placenta-derived MSC (hPMSC) metabolome profiling with chemical isotope labeling (CIL) LC-MS. Rapamycin or 3-methyladenine was successfully used to induce or inhibit autophagy, respectively. Then, 12C- and 13C-dansylation labeling LC-MS were used to profile the amine/phenol submetabolome. A total of 935 peak pairs were detected and 50 metabolites were positively identified using the dansylation metabolite standards library, and 669 metabolites were putatively identified based on an accurate mass match in metabolome databases. 12C/13C-p-dimethylaminophenacyl bromide labeling LC-MS was used to analyze the carboxylic acid submetabolome; 4736 peak pairs were detected, among which 33 metabolites were positively identified in the dimethylaminophenacyl metabolite standards library, and 3007 metabolites were putatively identified. PCA/OPLS-DA analysis combined with volcano plots and Venn diagrams was used to determine the significant metabolites. Metabolites pathway analysis demonstrated that hPMSCs appeared to generate more ornithine with the arginine and proline metabolism pathway and utilized more pantothenic acid to synthesize acetyl-CoA in the beta-alanine metabolism pathway when autophagy was activated. Meanwhile, acetyl-CoA conversion to fatty acids led to accumulation in the fatty acid biosynthesis pathway. In contrast, when autophagy was suppressed, a reduction in metabolites demonstrated weakened metabolic activity in these metabolic pathways. Our research provides a more comprehensive understanding of hPMSC metabolism associated with autophagy.

journal_name

Exp Cell Res

authors

Sun Y,Chen D,Liu J,Xu Y,Shi X,Luo X,Pan Q,Yu J,Yang J,Cao H,Li L,Li L

doi

10.1016/j.yexcr.2018.09.009

subject

Has Abstract

pub_date

2018-11-01 00:00:00

pages

52-60

issue

1

eissn

0014-4827

issn

1090-2422

pii

S0014-4827(18)30763-8

journal_volume

372

pub_type

杂志文章
  • eIF4E-Overexpression imparts perillyl alcohol and rapamycin-mediated regulation of telomerase reverse transcriptase.

    abstract::Translation is mediated partly by regulation of free eukaryotic initiation factor 4E (eIF4E) levels through PI3K-Akt-mTOR signaling. Cancer cells treated with the plant-derived perillyl alcohol (POH) or the mechanistic target of rapamycin (mTOR) inhibitor rapamycin dephosphorylate eIF4E-binding protein (4E-BP1) and at...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2013.05.029

    authors: Sundin T,Peffley D,Hentosh P

    更新日期:2013-08-01 00:00:00

  • Characterization of the sebocyte lipid droplet proteome reveals novel potential regulators of sebaceous lipogenesis.

    abstract::Lipid metabolism depends on lipid droplets (LD), cytoplasmic structures surrounded by a protein-rich phospholipid monolayer. Although lipid synthesis is the hallmark of sebaceous gland cell differentiation, the LD-associated proteins of sebocytes have not been evaluated systematically. The LD fraction of SZ95 sebocyte...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2014.12.004

    authors: Dahlhoff M,Fröhlich T,Arnold GJ,Müller U,Leonhardt H,Zouboulis CC,Schneider MR

    更新日期:2015-03-01 00:00:00

  • Extracellular ATP mobilizes intracellular Ca2+ in T51B rat liver epithelial cells: a study involving single cell measurements.

    abstract::T51B rat liver epithelial cells were stimulated with extracellular ATP. Changes in cytoplasmic free Ca2+ concentration [( Ca2+]i) were measured by fura-2 both in a large population of cells on coverslips in a cuvette and in single cells in a microscopic system. Extracellular ATP evoked a prompt increase in [Ca2+]i in ...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(89)90198-5

    authors: Boynton AL,Cooney RV,Hill TD,Nilsson T,Arkhammar P,Berggren PO

    更新日期:1989-03-01 00:00:00

  • Mammalian ChlR1 has a role in heterochromatin organization.

    abstract::The ChlR1 DNA helicase, encoded by DDX11 gene, which is responsible for Warsaw breakage syndrome (WABS), has a role in sister-chromatid cohesion. In this study, we show that human ChlR1 deficient cells exhibit abnormal heterochromatin organization. While constitutive heterochromatin is discretely localized at perinucl...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2011.08.006

    authors: Inoue A,Hyle J,Lechner MS,Lahti JM

    更新日期:2011-10-15 00:00:00

  • Establishment of medakafish as a model for stem cell-based gene therapy: efficient gene delivery and potential chromosomal integration by baculoviral vectors.

    abstract::Viral vectors hold promise and challenges in gene therapy. Specifically, we have previously shown that baculoviral (BV) vectors have a high efficiency of gene delivery in human embryonic stem (ES) cells. Here we report the development of a complementary system to further our evaluation by utilizing the laboratory fish...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2009.04.015

    authors: Yan Y,Du J,Chen T,Yi M,Li M,Wang S,Li CM,Hong Y

    更新日期:2009-08-01 00:00:00

  • Thrombin peptide, TP508, induces differential gene expression in fibroblasts through a nonproteolytic activation pathway.

    abstract::Prior studies have shown that synthetic peptides representing the domain of thrombin responsible for high-affinity binding to fibroblasts stimulate chemotactic and cell proliferative signals through a nonproteolytic mechanism. One of these peptides, TP508, has recently been shown to be chemotactic for neutrophils, to ...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1998.4372

    authors: Sower LE,Payne DA,Meyers R,Carney DH

    更新日期:1999-03-15 00:00:00

  • Differential regulation of thyrotropin receptor and thyroglobulin mRNA accumulation at the cellular level: an in situ hybridization study.

    abstract::Regulation of TSH receptor (TSHr) mRNA accumulation has been investigated in canine thyrocytes in primary culture by in situ hybridization experiments; the effects of the mitogenic thyrotropin (TSH), epidermal growth factor (EGF), and phorbol ester TPA (12-O-tetradecanoylphorbol-13-acetate) have been compared. Apart f...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(92)90451-d

    authors: Pohl V,Maenhaut C,Gérard C,Vassart G,Dumont JE

    更新日期:1992-04-01 00:00:00

  • ISG15 promotes esophageal squamous cell carcinoma tumorigenesis via c-MET/Fyn/β-catenin signaling pathway.

    abstract::Esophageal squamous cell carcinoma (ESCC) is one of the most malignant tumors in China with a poor prognosis. Most ESCC patients were diagnosed at advanced stages, losing the opportunity for surgical excision. Hence, it remains a pressing work to identify biomarkers for early detection, prognosis prediction and target...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2018.03.017

    authors: Yuan H,Zhou W,Yang Y,Xue L,Liu L,Song Y

    更新日期:2018-06-01 00:00:00

  • Translocation of ferritin and biomineralization of goethite in the radula of the limpet Cellana toreuma reeve.

    abstract::The radula of the limpet, Cellana toreuma, consists of a continuous series of teeth in various stages of iron biomineralization. The major iron-binding protein of the limpet's iron-containing granule (siderosome) has been purified and identified as ferritin. Limpet ferritin has a M(r) of 575 kDa and can be resolved in...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1995.1214

    authors: Lu HK,Huang CM,Li CW

    更新日期:1995-07-01 00:00:00

  • The cytochrome b5 tail anchors and stabilizes subdomains of human DNA topoisomerase II alpha in the cytoplasm of retrovirally infected mammalian cells.

    abstract::DNA topoisomerase II (topo II) is the target of many anticancer drugs and is often altered in drug-resistant cell lines. In some tumor cell lines truncated isoforms of topo IIalpha are localized to the cytoplasm. To study the localization and function of individual enzyme domains, we have epitope-tagged several fragme...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1999.4446

    authors: Soltermann A,Ernst A,Leroy D,Stahel RA,Gasser SM

    更新日期:1999-06-15 00:00:00

  • Effect of myonuclear number and mitochondrial fusion on Drosophila indirect flight muscle organization and size.

    abstract::Mechanisms involved in establishing the organization and numbers of fibres in a muscle are not completely understood. During Drosophila indirect flight muscle (IFM) formation, muscle growth is achieved by both incorporating hundreds of nuclei, and hypertrophy. As a result, IFMs provide a good model with which to under...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2013.06.021

    authors: Rai M,Nongthomba U

    更新日期:2013-10-15 00:00:00

  • HIF-1alpha induces MXI1 by alternate promoter usage in human neuroblastoma cells.

    abstract::Adaptation to low oxygen conditions is essential for maintaining homeostasis and viability in oxygen-consuming multi-cellular tissues, including solid tumors. Central in these processes are the hypoxia-inducible transcription factors, HIF-1 and HIF-2, controlling genes involved in e.g. glucose metabolism and neovascul...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2009.02.015

    authors: Löfstedt T,Fredlund E,Noguera R,Navarro S,Holmquist-Mengelbier L,Beckman S,Påhlman S,Axelson H

    更新日期:2009-07-01 00:00:00

  • Adhesion of human amnion epithelial cells to extracellular matrix. Evidence for multiple mechanisms.

    abstract::Human amnion epithelial cells attach and flatten slowly (approximately 65 min) onto plastic in the presence of serum but much more rapidly (20-30 min) onto subcellular matrix (SCM) deposited by the same cells. This matrix contains both fibronectin and laminin, but neither molecule on its own can reproduce its adhesive...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(84)90611-6

    authors: Aplin JD,Campbell S,Foden LJ

    更新日期:1984-08-01 00:00:00

  • The metastasis suppressor NME1 inhibits melanoma cell motility via direct transcriptional induction of the integrin beta-3 gene.

    abstract::Expression of the metastasis suppressor NME1 in melanoma is associated with reduced cellular motility, invasion, and metastasis, but mechanisms underlying these activities are not completely understood. Herein we report a novel mechanism through which NME1 drives formation of large, stable focal adhesions (FAs) in mel...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2018.11.010

    authors: Leonard MK,Novak M,Snyder D,Snow G,Pamidimukkala N,McCorkle JR,Yang XH,Kaetzel DM

    更新日期:2019-01-01 00:00:00

  • Expression of the cytoskeletal-associated protein filamin in adult rat organs.

    abstract::Filamin is a well-characterized actin-associated protein first isolated from chicken smooth muscle. Subsequently, this polypeptide and its nonmuscle homolog actin-binding protein have been shown to be expressed in avian muscle tissue, mammalian smooth muscle, mammalian macrophages and other blood cell types, as well a...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1993.1317

    authors: Brown KD,Binder LI

    更新日期:1993-12-01 00:00:00

  • The impact of maternal serum on development of enolase activity in fetal rat brain cell culture.

    abstract::The effect of gestational age on serum-mediated changes in enolase activity was tested in a fetal rat brain cell culture. After 6 days exposure to graded concentrations (10 and 20%) of nonpregnant female rat sera, enolase activity in brain cell cultures increased from 2.83 +/- 0.03 to 3.74 +/- 0.19 mumol/min/mg protei...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(90)90298-o

    authors: Shambaugh GE 3rd,Clough D,Munari L,Koehler RR,Radosevich JA

    更新日期:1990-02-01 00:00:00

  • A high-affinity binding protein for the regulatory subunit of cAMP-dependent protein kinase II in the centrosome of human cells.

    abstract::In the human lymphoblastic cell line KE 37, Northern blot analysis with cDNA probes for human regulatory subunits RII alpha RII beta of the cAMP-dependent protein kinase (A-kinase) type II and immunoblotting or immunoprecipitation studies with several antibodies directed against RII alpha and RII beta show that these ...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1993.1029

    authors: Keryer G,Rios RM,Landmark BF,Skalhegg B,Lohmann SM,Bornens M

    更新日期:1993-02-01 00:00:00

  • An enhancer required for transcription of the Col6a1 gene in muscle connective tissue is induced by signals released from muscle cells.

    abstract::Collagen VI is a survival factor for skeletal muscle produced by endomysial cells and localized in connective tissue around muscle fibers. Mutations of its genes (COL6A1, COL6A2 and COL6A3) cause two muscular disorders, Bethlem myopathy and Ullrich disease. Expression of Collagen VI is highly dynamic during developmen...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2008.08.006

    authors: Braghetta P,Ferrari A,Fabbro C,Bizzotto D,Volpin D,Bonaldo P,Bressan GM

    更新日期:2008-11-15 00:00:00

  • MicroRNA library screening identifies growth-suppressive microRNAs that regulate genes involved in cell cycle progression and apoptosis.

    abstract::Micro(mi)RNAs play important and varied roles in tumorigenesis; however, the full repertoire of miRNAs that affect cancer cell growth is not known. In this study, an miRNA library was screened to identify those that affect the growth of A549 tumor cells. Among 300 miRNAs, miR-28-5p, -323-5p, -510-5p, -552-3p, and -608...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2015.10.012

    authors: Choi YC,Yoon S,Byun Y,Lee G,Kee H,Jeong Y,Yoon J,Baek K

    更新日期:2015-12-10 00:00:00

  • Focal adhesion kinase regulates cell-cell contact formation in epithelial cells via modulation of Rho.

    abstract::Focal Adhesion Kinase (FAK) is a non-receptor tyrosine kinase that plays a key role in cellular processes such as cell adhesion, migration, proliferation and survival. Recent studies have also implicated FAK in the regulation of cell-cell adhesion. Here, evidence is presented showing that siRNA-mediated suppression of...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2008.08.010

    authors: Playford MP,Vadali K,Cai X,Burridge K,Schaller MD

    更新日期:2008-10-15 00:00:00

  • Glomerular endothelium: a porous sieve and formidable barrier.

    abstract::The glomerular capillary endothelium is highly specialized to support the selective filtration of massive volumes of plasma. Filtration is driven by Starling forces acting across the glomerular capillary wall, and depends on its large surface area and extremely high water permeability. Glomerular endothelial cells are...

    journal_title:Experimental cell research

    pub_type: 杂志文章,评审

    doi:10.1016/j.yexcr.2012.02.032

    authors: Obeidat M,Obeidat M,Ballermann BJ

    更新日期:2012-05-15 00:00:00

  • Drosophila mars is required for organizing kinetochore microtubules during mitosis.

    abstract::Spindle assembly is essential for the equal distribution of genetic material to the daughter cells during mitosis. The process of spindle assembly is complicated and involves multiple levels of molecular regulation. It is generally accepted that mitotic spindles are emanated from the centrosomes and are assembled in t...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2008.08.004

    authors: Yang CP,Fan SS

    更新日期:2008-10-15 00:00:00

  • SNEV overexpression extends the life span of human endothelial cells.

    abstract::In a recent screening for genes down regulated in replicatively senescent human umbilical vein endothelial cells (HUVECs), we have isolated the novel protein SNEV. Since then SNEV has proven as a multifaceted protein playing a role in pre-mRNA splicing, DNA repair, and the ubiquitin/proteosome system. Here, we report ...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2005.11.025

    authors: Voglauer R,Chang MW,Dampier B,Wieser M,Baumann K,Sterovsky T,Schreiber M,Katinger H,Grillari J

    更新日期:2006-04-01 00:00:00

  • Increment of nonreceptor tyrosine kinase Arg RNA as evaluated by semiquantitative RT-PCR in granulocyte and macrophage-like differentiation of HL-60 cells.

    abstract::The products of the human Arg gene and human, mouse, Drosophila, and nematode Abl genes characterize the Abelson family of nonreceptor tyrosine protein kinase. The Arg gene, expressed as a 12-kb transcript, codes a protein highly related to c-abl in the tyrosine kinase, SH2, and SH3 domains, and both proteins have a m...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1998.4234

    authors: Perego RA,Bianchi C,Brando B,Urbano M,Del Monte U

    更新日期:1998-11-25 00:00:00

  • Hypoxia, pseudohypoxia and cellular differentiation.

    abstract::Tumor hypoxia correlates to aggressive disease, and while this is explained by a variety of factors, one clue to understand this phenomena was the finding that hypoxia induces a de-differentiated, stem cell-like phenotype in neuroblastoma and breast tumor cells. The hypoxia inducible transcription factors (HIFs) are r...

    journal_title:Experimental cell research

    pub_type: 杂志文章,评审

    doi:10.1016/j.yexcr.2017.03.007

    authors: Mohlin S,Wigerup C,Jögi A,Påhlman S

    更新日期:2017-07-15 00:00:00

  • Effects of prostaglandin E2 on the subcellular localization of Epac-1 and Rap1 proteins during Fcgamma-receptor-mediated phagocytosis in alveolar macrophages.

    abstract::Recent studies have demonstrated a central role for the exchange protein activated by cAMP (Epac) in the inhibition of Fcgamma-receptor-mediated phagocytosis and bacterial killing by prostaglandin E(2) (PGE(2)) in macrophages. However, the subcellular localization of Epac, and its primary target Rap1, has yet to be de...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2007.10.011

    authors: Brock TG,Serezani CH,Carstens JK,Peters-Golden M,Aronoff DM

    更新日期:2008-01-15 00:00:00

  • The zeta isozyme of protein kinase C binds to tubulin through the pseudosubstrate domain.

    abstract::It has been suggested that the protein kinase C zeta (zeta PKC) isoform is involved in mitogenic signaling in Xenopus oocytes and mammalian cells. Thus, the characterization of potential regulatory molecules that bind to zeta PKC is of great interest. We report here the identification by affinity chromatography of tub...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1006/excr.1996.3364

    authors: García-Rocha M,Avila J,Lozano J

    更新日期:1997-01-10 00:00:00

  • Restoration of daunomycin retention in multidrug-resistant P388 cells by submicromolar concentrations of SDZ PSC 833, a nonimmunosuppressive cyclosporin derivative.

    abstract::Overexpression of P-glycoprotein may cause increased efflux of a variety of anticancer drugs (ACD) leading to multidrug resistance (MDR) of tumor cells. Two sublines of murine monocytic leukemia P388 cells were used, one parental (Par-P388) and one multidrug resistant (MDR-P388). In cell growth inhibition assays in vi...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(91)90452-z

    authors: Boesch D,Muller K,Pourtier-Manzanedo A,Loor F

    更新日期:1991-09-01 00:00:00

  • Antibodies to phosphotyrosine injected in Xenopus laevis oocytes modulate maturation induced by insulin/IGF-I.

    abstract::Xenopus oocytes carry IGF-I receptors, and undergo meiotic maturation in response to binding of IGF-I or insulin to the IGF-I receptor. Maturation is initiated upon activation of the IGF-I receptor tyrosine kinase and requires tyrosine dephosphorylation of p34cdc2, the kinase component of maturation promoting factor (...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/0014-4827(91)90508-r

    authors: Hainaut P,Giorgetti S,Kowalski A,Ballotti R,Van Obberghen E

    更新日期:1991-07-01 00:00:00

  • High glucose increases glomerular filtration barrier permeability by activating protein kinase G type Iα subunits in a Nox4-dependent manner.

    abstract::Hyperglycemia is a primary factor that disturbs podocyte function in the glomerular filtration process; this disturbance leads to the development of diabetic nephropathy, and ultimately, renal failure. Podocyte function may also be altered by biological agents that modify protein kinase activity, including the cGMP-ac...

    journal_title:Experimental cell research

    pub_type: 杂志文章

    doi:10.1016/j.yexcr.2013.09.005

    authors: Piwkowska A,Rogacka D,Audzeyenka I,Angielski S,Jankowski M

    更新日期:2014-01-01 00:00:00