Cloning and expression of a novel α-1,3-arabinofuranosidase from Penicillium oxalicum sp. 68.

Abstract:

:The discovery and creation of biocatalysts for plant biomass conversion are essential for industrial demand and scientific research of the plant cell wall. α-1,2 and α-1,3-L-arabinofuranosidases are debranching enzymes that catalyzing hydrolytic release of α-L-arabinofuranosyl residues in plant cell wall. Gene database analyses shows that GH62 family only contains specific α-L-arabinofuranosidases that play an important role in the degradation and structure of the plant cell wall. At present, there are only 22 enzymes in this group has been characterized. In this study, we cloned a novel α-1,3-arabinofuranosidase gene (poabf62a) belonging to glycoside hydrolase family 62 from Penicillium oxalicum sp. 68 and expressed it in Pichia pastoris. The molecular mass of recombinant PoAbf62A was estimated to be 32.9 kDa. Using p-nitrophenyl-α-l-arabinofuranoside (pNPαAbf) as substrate, purified PoAbf62A exhibited an optimal pH of 4.5 and temperature of 35 °C. Results of methylation and 13C NMR analyses showed that PoAbf62A was exclusively α-1,3-arabinofuranosidase, specific for cleavage of α-1,3-arabinofuranosyl residues, and with the absence of activity towards α-1,2-arabinofuranose and α-1,5-arabinofuranose. Therefore, PoAbf62A exhibits high activity on sugar beet arabinan and wheat arabinoxylan, because their branched side chain are decorated with α-1,3-arabinofuranose. On the other hand, there is a lack of activity with linear-α-L-1,5-arabinan and xylan that only contained α-L-1,5-arabinofuranose or β-1,4-xylose. The α-1,3-arabinofuranosidase activity identified here provides a new biocatalytic tool to degrade hemicellulose and analyze the structure of plant cell walls.

journal_name

AMB Express

journal_title

AMB Express

authors

Hu Y,Yan X,Zhang H,Liu J,Luo F,Cui Y,Wang W,Zhou Y

doi

10.1186/s13568-018-0577-4

subject

Has Abstract

pub_date

2018-04-02 00:00:00

pages

51

issue

1

issn

2191-0855

pii

10.1186/s13568-018-0577-4

journal_volume

8

pub_type

杂志文章
  • Long-term nitrate removal through methane-dependent denitrification microorganisms in sequencing batch reactors fed with only nitrate and methane.

    abstract::Denitrifying anaerobic methane oxidation (damo) bioprocesses can remove nitrate using methane as the electron donor, which gains great concern due to the current stringent discharge standard of nitrogen in wastewater treatment plants. To obtain an engineering acceptable nitrogen removal rate (NRR) and demonstrate the ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0637-9

    authors: Li W,Lu P,Chai F,Zhang L,Han X,Zhang D

    更新日期:2018-06-30 00:00:00

  • Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains.

    abstract::A novel strain of Pseudomonas putida LS46 was isolated from wastewater on the basis of its ability to synthesize medium chain-length polyhydroxyalkanoates (mcl-PHAs). P.putida LS46 was differentiated from other P.putida strains on the basis of cpn60 (UT). The complete genome of P.putida LS46 was sequenced and annotate...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-014-0037-8

    authors: Sharma PK,Fu J,Zhang X,Fristensky B,Sparling R,Levin DB

    更新日期:2014-05-22 00:00:00

  • (S)-3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase (FadB') from fatty acid degradation operon of Ralstonia eutropha H16.

    abstract::In this study (S)-3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase (H16_A0461/FadB', gene ID: 4247876) from one of two active fatty acid degradation operons of Ralstonia eutropha H16 has been heterologously expressed in Escherichia coli, purified as protein possessing a His-Tag and initially characterized. FadB' is...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-014-0069-0

    authors: Volodina E,Steinbüchel A

    更新日期:2014-08-28 00:00:00

  • The biodiversity of Lactobacillus spp. from Iranian raw milk Motal cheese and antibacterial evaluation based on bacteriocin-encoding genes.

    abstract::Lactobacilli, as the largest group of lactic acid bacteria, produce large amounts of antimicrobial metabolites such as organic acids, fatty acids, ammonia, hydrogen peroxide, diacetyl and bacteriocin, which inhibit the growth of pathogenic bacteria and increase shelf life of food. The aim of this study was to identify...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0474-2

    authors: Azizi F,Habibi Najafi MB,Edalatian Dovom MR

    更新日期:2017-09-18 00:00:00

  • Strategies for improving production performance of probiotic Pediococcus acidilactici viable cell by overcoming lactic acid inhibition.

    abstract::Lactic acid bacteria are industrially important microorganisms recognized for fermentative ability mostly in their probiotic benefits as well as lactic acid production for various applications. Fermentation conditions such as concentration of initial glucose in the culture, concentration of lactic acid accumulated in ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0519-6

    authors: Othman M,Ariff AB,Wasoh H,Kapri MR,Halim M

    更新日期:2017-11-27 00:00:00

  • Screening of white-rot fungi manganese peroxidases: a comparison between the specific activities of the enzyme from different native producers.

    abstract:: In this study manganese peroxidase (MnP) enzymes from selected white-rot fungi were isolated and compared for potential future recombinant production. White-rot fungi were cultivated in small-scale in liquid media and a simplified process was established for the purification of extracellular enzymes.Five lignin degra...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/2191-0855-2-62

    authors: Järvinen J,Taskila S,Isomäki R,Ojamo H

    更新日期:2012-11-29 00:00:00

  • NADH-dependent biosensor in Saccharomyces cerevisiae: principle and validation at the single cell level.

    abstract::A reporter system was constructed to measure perturbations in the NADH/NAD(+) co-factor balance in yeast, by using the green fluorescent protein gene under the control of the GPD2 promoter that is induced under conditions of excess of NADH. High fluorescence levels were obtained in a glycerol 3-phosphate dehydrogenase...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-014-0081-4

    authors: Knudsen JD,Carlquist M,Gorwa-Grauslund M

    更新日期:2014-10-30 00:00:00

  • Methanogenic biodegradation of C9 to C12n-alkanes initiated by Smithella via fumarate addition mechanism.

    abstract::In the present study, a methanogenic alkane-degrading (a mixture of C9 to C12n-alkanes) culture enriched from production water of a low-temperature oil reservoir was established and assessed. Significant methane production was detected in the alkane-amended enrichment cultures compared with alkane-free controls over a...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-0956-5

    authors: Ji JH,Zhou L,Mbadinga SM,Irfan M,Liu YF,Pan P,Qi ZZ,Chen J,Liu JF,Yang SZ,Gu JD,Mu BZ

    更新日期:2020-02-01 00:00:00

  • Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3.

    abstract:: Hydroquinone-1,2-dioxygenase, an enzyme involved in the degradation of alkylphenols in Sphingomonas sp. strain TTNP3 was purified to apparent homogeneity. The extradiol dioxygenase catalyzed the ring fission of hydroquinone to 4-hydroxymuconic semialdehyde and the degradation of chlorinated and several alkylated hydr...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/2191-0855-1-8

    authors: Kolvenbach BA,Lenz M,Benndorf D,Rapp E,Fousek J,Vlcek C,Schäffer A,Gabriel FL,Kohler HP,Corvini PF

    更新日期:2011-05-27 00:00:00

  • Glucose limited feed strategy leads to increased production of fusicocca-2,10(14)-diene by Saccharomyces cerevisiae.

    abstract::Fusicocca-2,10(14)-diene (FCdiene) is a diterpene which is interesting as a precursor of the anti-cancer drug fusicoccin A and therefore for pharmaceutical applications. Production of FCdiene using a genetically modified Saccharomyces cerevisiae has been previously demonstrated with batch cultivations with a product c...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0662-8

    authors: Halka LM,Nowacki C,Kleinschmidt A,Koenen K,Wichmann R

    更新日期:2018-08-22 00:00:00

  • Poly-L-gamma-glutamic acid production by recombinant Bacillus subtilis without pgsA gene.

    abstract::Poly-gamma-glutamic acid (PGA) is a promising bio-based polymer that shares many functions with poly (acrylic acid) and its derivatives. Thus, technologies for efficient production and molecular size control of PGA are required to expand the application of this useful biopolymer. In Bacillus strains, PGA is synthesize...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0636-x

    authors: Sawada K,Araki H,Takimura Y,Masuda K,Kageyama Y,Ozaki K,Hagihara H

    更新日期:2018-07-03 00:00:00

  • Establishment of the monomeric yellow-green fluorescent protein mNeonGreen for life cell imaging in mycelial fungi.

    abstract::The engineered monomeric version of the lancelet Branchiostoma lanceolatum fluorescent protein, mNeonGreen (mNG), has several positive characteristics, such as a very bright fluorescence, high photostability and fast maturation. These features make it a good candidate for the utilization as fluorescent tool for cell b...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-01160-x

    authors: Werner A,Otte KL,Stahlhut G,Pöggeler S

    更新日期:2020-12-21 00:00:00

  • High-level fed-batch fermentative expression of an engineered Staphylococcal protein A based ligand in E. coli: purification and characterization.

    abstract::The major platform for high level recombinant protein production is based on genetically modified microorganisms like Escherichia coli (E. coli) due to its short dividing time, ability to use inexpensive substrates and additionally, its genetics is comparatively simple, well characterized and can be manipulated easily...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-015-0155-y

    authors: Kangwa M,Yelemane V,Polat AN,Gorrepati KD,Grasselli M,Fernández-Lahore M

    更新日期:2015-12-01 00:00:00

  • Heterologous expression of a Streptomyces cyaneus laccase for biomass modification applications.

    abstract::Laccases are used for the conversion of biomass into fermentable sugars but it is difficult to produce high yields of active laccases in heterologous expression systems. We overcame this challenge by expressing Streptomyces cyaneus CECT 3335 laccase in Escherichia coli (ScLac) and we achieved a yield of up to 104 mg L...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0387-0

    authors: Ece S,Lambertz C,Fischer R,Commandeur U

    更新日期:2017-12-01 00:00:00

  • Cellulolytic and proteolytic ability of bacteria isolated from gastrointestinal tract and composting of a hippopotamus.

    abstract::The bioprospection for cellulase and protease producers is a promise strategy for the discovery of potential biocatalysts for use in hydrolysis of lignocellulosic materials as well as proteic residues. These enzymes can increment and turn viable the production of second generation ethanol from different and alternativ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-016-0188-x

    authors: da Cruz Ramos GF,Ramos PL,Passarini MRZ,Vieira Silveira MA,Okamoto DN,de Oliveira LCG,Zezzo LV,Marem A,Santos Rocha RC,da Cruz JB,Juliano L,de Vasconcellos SP

    更新日期:2016-03-01 00:00:00

  • Effects of rehydration nutrients on H2S metabolism and formation of volatile sulfur compounds by the wine yeast VL3.

    abstract:: In winemaking, nutrient supplementation is a common practice for optimising fermentation and producing quality wine. Nutritionally suboptimal grape juices are often enriched with nutrients in order to manipulate the production of yeast aroma compounds. Nutrients are also added to active dry yeast (ADY) rehydration me...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/2191-0855-1-36

    authors: Winter G,Henschke PA,Higgins VJ,Ugliano M,Curtin CD

    更新日期:2011-11-02 00:00:00

  • Anaerobic digestion performance of sweet potato vine and animal manure under wet, semi-dry, and dry conditions.

    abstract::Sweet potato vine (SPV) is an abundant agricultural waste, which is easy to obtain at low cost and has the potential to produce clean energy via anaerobic digestion (AD). The main objectives of this study were to reveal methane production and process stability of SPV and the mixtures with animal manure under various t...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0572-9

    authors: Zhang E,Li J,Zhang K,Wang F,Yang H,Zhi S,Liu G

    更新日期:2018-03-22 00:00:00

  • Natural antibacterial agents from arid-region pretreated lignocellulosic biomasses and extracts for the control of lactic acid bacteria in yeast fermentation.

    abstract::Bacterial contamination is one of the major challenges faced by yeast fermentation industries as the contaminating microorganisms produce lactic acid and acetic acid, which reduces the viability of yeast, and hence fermentation yields. The primary bacterial contaminants of yeast fermentations are lactic acid bacteria ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-018-0654-8

    authors: Haris S,Fang C,Bastidas-Oyanedel JR,Prather KJ,Schmidt JE,Thomsen MH

    更新日期:2018-08-06 00:00:00

  • Therapeutic efficacy of catalpol against apoptosis in cardiomyocytes derived from human induced pluripotent stem cells.

    abstract::Cardiac arrhythmia is an irregular heart rhythm that can lead to serious heart conditions and various organ disorders, and may cause sudden cardiac death. Catalpol belongs to the iridoid glycoside family and is highly abundant in Rehmannia glutinosa Libosch. The study included five groups such as group I (normal contr...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-00986-9

    authors: Yang L,Feng X,Li Y,Zhang S,Ying Y

    更新日期:2020-03-20 00:00:00

  • Thermostabilization of the uronate dehydrogenase from Agrobacterium tumefaciens by semi-rational design.

    abstract::Aldaric acids represent biobased 'top value-added chemicals' that have the potential to substitute petroleum-derived chemicals. Until today they are mostly produced from corresponding aldoses using strong chemical oxidizing agents. An environmentally friendly and more selective process could be achieved by using natur...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0405-2

    authors: Roth T,Beer B,Pick A,Sieber V

    更新日期:2017-12-01 00:00:00

  • Effects of Piromyces sp. CN6 CGMCC 14449 on fermentation quality, nutrient composition and the in vitro degradation rate of whole crop maize silage.

    abstract::This study investigated the effects of the rumen fungus Piromyces sp. CN6 CGMCC 14449 as a silage additive on the fermentation quality, nutrient composition and in vitro digestibility of whole crop maize silage. Whole crop maize served as the silage material and was vacuum packed in polyethylene bags. Three ensiling t...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0846-x

    authors: Wang D,Zhao C,Liu S,Zhang T,Yao J,Cao Y

    更新日期:2019-07-29 00:00:00

  • Enhancement of active compound, genipin, from Gardeniae Fructus using immobilized glycosyl hydrolase family 3 β-glucosidase from Lactobacillus antri.

    abstract::Geniposide is an iridoid glycoside, which is abundant in Gardeniae Fructus. Despite the various pharmaceutical effects of geniposide on a human body, its hydrolysis into a smaller molecule, genipin, by β-glucosidase produced by bacteria in the intestines is particularly important to improve geniposide uptake into the ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0360-y

    authors: Kim YS,Lee CJ,Ma JY

    更新日期:2017-12-01 00:00:00

  • Large-scale microcarrier culture of HEK293T cells and Vero cells in single-use bioreactors.

    abstract::Gene therapy and viral vaccine are becoming attractive therapeutic options for the treatment of different malignant diseases. Viral vector productions are often using static culture vessels and small volume stainless steel bioreactors (SSB). However, the yield of each vessel can be relatively low and multiple vessels ...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0794-5

    authors: Yang J,Guertin P,Jia G,Lv Z,Yang H,Ju D

    更新日期:2019-05-24 00:00:00

  • Gut microbiota of red swamp crayfish Procambarus clarkii in integrated crayfish-rice cultivation model.

    abstract::Increasing evidences suggest that intestinal microbiota balance closely correlated with host's health status could affected by external environment. Integrated crayfish-rice cultivation model is a highly efficient artificial ecosystem widely practiced in subtropical China. Less information is available to estimate the...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-019-0944-9

    authors: Shui Y,Guan ZB,Liu GF,Fan LM

    更新日期:2020-01-14 00:00:00

  • Autolysis of Pichia pastoris induced by cold.

    abstract::The production of recombinant biopharmaceutical proteins is a multi-billion dollar market. Protein recovery represents a major part of the production costs. Pichia pastoris is one of the microbial systems most used for the production of heterologous proteins. The use of a cold-induced promoter to express lytic enzymes...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0397-y

    authors: Bartolo-Aguilar Y,Dendooven L,Chávez-Cabrera C,Flores-Cotera LB,Hidalgo-Lara ME,Villa-Tanaca L,Marsch R

    更新日期:2017-12-01 00:00:00

  • Genetic algorithm with a crossover elitist preservation mechanism for protein-ligand docking.

    abstract::Protein-ligand docking plays an important role in computer-aided pharmaceutical development. Protein-ligand docking can be defined as a search algorithm with a scoring function, whose aim is to determine the conformation of the ligand and the receptor with the lowest energy. Hence, to improve an efficient algorithm ha...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-017-0476-0

    authors: Guan B,Zhang C,Ning J

    更新日期:2017-09-13 00:00:00

  • Revelation of the ability of Burkholderia sp. USM (JCM 15050) PHA synthase to polymerize 4-hydroxybutyrate monomer.

    abstract:: The nutrition-versatility of Burkholderia sp. strain USM (JCM 15050) has initiated the studies on the use of this bacterium for polyhydroxyalkanoate (PHA) production. To date, the Burkholderia sp. has been reported to synthesize 3-hydroxybutyrate, 3-hydroxyvalerate and 3-hydroxy-4-methylvalerate monomers. In this stu...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/2191-0855-2-41

    authors: Lau NS,Sudesh K

    更新日期:2012-08-09 00:00:00

  • Heat shock drives genomic instability and phenotypic variations in yeast.

    abstract::High temperature causes ubiquitous environmental stress to microorganisms, but studies have not fully explained whether and to what extent heat shock would affect genome stability. Hence, this study explored heat-shock-induced genomic alterations in the yeast Saccharomyces cerevisiae. Using genetic screening systems a...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-020-01091-7

    authors: Shen L,Wang YT,Tang XX,Zhang K,Wang PM,Sui Y,Zheng DQ

    更新日期:2020-08-17 00:00:00

  • A lipophilic fluorescent LipidGreen1-based quantification method for high-throughput screening analysis of intracellular poly-3-hydroxybutyrate.

    abstract::Poly-3-hydroxybutyrate (PHB), the most abundant type of polyhydroxyalkanoates (PHA) is synthesized inside a variety of microorganisms as a primary candidate for industrial PHB production. Lipophilic dyes such as Nile red and BODIPY have been used to quantify intracellular PHB, but their uses have often been limited in...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-015-0131-6

    authors: Choi JE,Na HY,Yang TH,Rhee SK,Song JK

    更新日期:2015-12-01 00:00:00

  • Effect of the salts of deep ocean water on the production of cordycepin and adenosine of Cordyceps militaris-fermented product.

    abstract::Cordyceps militaris is a type of entomogenous fungi and has been widely used as a medicinal fungus in Asia. Cordycepin produced by C. militaris has also been found to protect the liver. Moreover, deep ocean water (DOW) was proven to increase the functional compounds of functional fungi-fermented products. However, the...

    journal_title:AMB Express

    pub_type: 杂志文章

    doi:10.1186/s13568-015-0140-5

    authors: Hung YP,Wang JJ,Wei BL,Lee CL

    更新日期:2015-12-01 00:00:00