STEM tomography analysis of the trypanosome transition zone.

Abstract:

:The protist Trypanosoma brucei is an emerging model for the study of cilia and flagella. Here, we used scanning transmission electron microscopy (STEM) tomography to describe the structure of the trypanosome transition zone (TZ). At the base of the TZ, nine transition fibres irradiate from the B microtubule of each doublet towards the membrane. The TZ adopts a 9 + 0 structure throughout its length of ∼300 nm and its lumen contains an electron-dense structure. The proximal portion of the TZ has an invariant length of 150 nm and is characterised by a collarette surrounding the membrane and the presence of electron-dense material between the membrane and the doublets. The distal portion exhibits more length variation (from 55 to 235 nm) and contains typical Y-links. STEM analysis revealed a more complex organisation of the Y-links compared to what was reported by conventional transmission electron microscopy. Observation of the very early phase of flagellum assembly demonstrated that the proximal portion and the collarette are assembled early during construction. The presence of the flagella connector that maintains the tip of the new flagellum to the side of the old was confirmed and additional filamentous structures making contact with the membrane of the flagellar pocket were also detected. The structure and potential functions of the TZ in trypanosomes are discussed, as well as its mode of assembly.

journal_name

J Struct Biol

authors

Trépout S,Tassin AM,Marco S,Bastin P

doi

10.1016/j.jsb.2017.12.005

subject

Has Abstract

pub_date

2018-04-01 00:00:00

pages

51-60

issue

1

eissn

1047-8477

issn

1095-8657

pii

S1047-8477(17)30228-9

journal_volume

202

pub_type

杂志文章
  • Mollicutes-wall-less bacteria with internal cytoskeletons.

    abstract::The structure and motility of the Mollicutes (Spiroplasma, Mycoplasma, and Acholeplasma) are briefly reviewed. The data are presented from the perspective of prokaryotic and eukaryotic motors, cytoskeletons, and cell motility. The Mollicutes are eubacteria derived from Clostridia by regressive evolution and genome red...

    journal_title:Journal of structural biology

    pub_type: 杂志文章,评审

    doi:10.1006/jsbi.1998.4063

    authors: Trachtenberg S

    更新日期:1998-12-15 00:00:00

  • The bridge-region of the Ku superfamily is an atypical zinc ribbon domain.

    abstract::Members of the Ku superfamily are DNA-end-binding proteins involved in non-homologous end-joining (NHEJ) DNA repair. The published crystal structure of human Ku-DNA complex reveals a heterodimer that forms a ring around dsDNA by means of the Ku core modules. These modules contain a highly conserved seven-stranded β-ba...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.05.011

    authors: Krishna SS,Aravind L

    更新日期:2010-12-01 00:00:00

  • The 17A structure of the 420 kDa lobster clottable protein by single particle reconstruction from cryoelectron micrographs.

    abstract::Crustaceans form clots by the rapid crosslinking of a hemolymph clottable protein (CP) to form long, branched polymers. Clotting limits hemolymph loss from wounds as well as playing a part in the innate immune response. CP is a 420 kDa homodimer with a large quantity of associated lipid, primarily the carotenoid pigme...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2005.06.008

    authors: Kollman JM,Quispe J

    更新日期:2005-09-01 00:00:00

  • Exaptation of two ancient immune proteins into a new dimeric pore-forming toxin in snails.

    abstract::The Membrane Attack Complex-Perforin (MACPF) family is ubiquitously found in all kingdoms. They have diverse cellular roles, however MACPFs with pore-forming toxic function in venoms and poisons are very rare in animals. Here we present the structure of PmPV2, a MACPF toxin from the poisonous apple snail eggs, that ca...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107531

    authors: Giglio ML,Ituarte S,Milesi V,Dreon MS,Brola TR,Caramelo J,Ip JCH,Maté S,Qiu JW,Otero LH,Heras H

    更新日期:2020-08-01 00:00:00

  • Symmetry: A guide to its application in 2D electron crystallography.

    abstract::A defining property of a crystal is its symmetry. This mini-review sets out to summarize all aspects that define 2D crystallographic symmetry as applied to the study of macromolecular structure. It begins by defining molecular point symmetries, before covering crystallographic symmetry operations in 2D, common notatio...

    journal_title:Journal of structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jsb.2007.07.002

    authors: Landsberg MJ,Hankamer B

    更新日期:2007-12-01 00:00:00

  • A transmission electron microscope study using vitrified ice sections of predentin: structural changes in the dentin collagenous matrix prior to mineralization.

    abstract::The assembly of the collagenous organic matrix prior to mineralization is a key step in the formation of bones and teeth. This process was studied in the predentin of continuously forming rat incisors, using unstained vitrified ice sections examined in the transmission electron microscope. Progressing from the odontob...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.2000.4320

    authors: Beniash E,Traub W,Veis A,Weiner S

    更新日期:2000-12-01 00:00:00

  • Conformational plasticity of the response regulator CpxR, a key player in Gammaproteobacteria virulence and drug-resistance.

    abstract::The transcriptional regulator CpxR mediates an adaptive response to envelope stress, tightly linked to virulence and antibiotics resistance in several Gammaproteobacteria pathogens. In this work, we integrated crystallographic and small-angle X-ray scattering data to gain insights into the structure and conformational...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2018.08.001

    authors: Mechaly AE,Haouz A,Sassoon N,Buschiazzo A,Betton JM,Alzari PM

    更新日期:2018-11-01 00:00:00

  • Change in single cystathionine β-synthase domain-containing protein from a bent to flat conformation upon adenosine monophosphate binding.

    abstract::Cystathionine β-synthase (CBS) domains are small intracellular modules that can act as binding domains for adenosine derivatives, and they may regulate the activity of associated enzymes or other functional domains. Among these, the single CBS domain-containing proteins, CBSXs, from Arabidopsis thaliana, have recently...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.04.013

    authors: Jeong BC,Park SH,Yoo KS,Shin JS,Song HK

    更新日期:2013-07-01 00:00:00

  • NMR and small-angle scattering-based structural analysis of protein complexes in solution.

    abstract::Structural analysis of multi-domain protein complexes is a key challenge in current biology and a prerequisite for understanding the molecular basis of essential cellular processes. The use of solution techniques is important for characterizing the quaternary arrangements and dynamics of domains and subunits of these ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.11.004

    authors: Madl T,Gabel F,Sattler M

    更新日期:2011-03-01 00:00:00

  • Depth-resolved structural imaging by third-harmonic generation microscopy.

    abstract::Third harmonic generation microscopy is shown to be a robust method for obtaining structural information on a variety of biological specimens. Its nature allows depth-resolved imaging of inhomogeneities with virtually no background from surrounding homogeneous media. With an appropriate illumination geometry, third ha...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/S1047-8477(03)00125-4

    authors: Oron D,Yelin D,Tal E,Raz S,Fachima R,Silberberg Y

    更新日期:2004-07-01 00:00:00

  • Shape and compaction of Escherichia coli nucleoids.

    abstract::The genomic DNA in cells of Escherichia coli is localized in one or two compact, phase-like regions with characteristic shapes. Nucleoids undergo progressive changes in shape and compaction in the presence of drugs such as chloramphenicol or puromycin. Forces which influence nucleoid shape and compaction are reviewed,...

    journal_title:Journal of structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jsb.2006.03.022

    authors: Zimmerman SB

    更新日期:2006-11-01 00:00:00

  • External bone size identifies different strength-decline trajectories for the male human femora.

    abstract::Understanding skeletal aging and predicting fracture risk is increasingly important with a growing elderly population. We hypothesized that when categorized by external bone size, the male femoral diaphysis would show different strength-age trajectories which can be explained by changes in morphology, composition and ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2020.107650

    authors: Bolger MW,Romanowicz GE,Bigelow EMR,Ward FS,Ciarelli A,Jepsen KJ,Kohn DH

    更新日期:2020-12-01 00:00:00

  • Raman spectroscopic study of the mineral composition of cirratulid tubes (Annelida, Polychaeta).

    abstract::Raman spectroscopy was used to determine the mineralogical composition of the calcareous tubes of three species belonging to the family Cirratulidae. In all three cases, the tubes were found to be aragonitic, confirming previous inferences based on EDX and thin section studies, and corroborated by new EDX analyses rev...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2010.05.010

    authors: Taylor PD,Vinn O,Kudryavtsev A,Schopf JW

    更新日期:2010-09-01 00:00:00

  • Micro-structure and chemical composition of vateritic deformities occurring in the bivalve Corbicula fluminea (Müller, 1774).

    abstract::Vateritic deformities occurring in the invasive heterodont bivalve Corbicula fluminea from several locations in the UK were characterised in detail for the first time using scanning electron microscopy, X-ray diffraction and different geochemical techniques (electron microprobe, ICP-AES, and mass spectrometry). Large ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2011.02.002

    authors: Frenzel M,Harper EM

    更新日期:2011-05-01 00:00:00

  • Comparative spatial localization of protein-A-tagged and authentic yeast nuclear pore complex proteins by immunogold electron microscopy.

    abstract::The nuclear pore complex (NPC) mediates protein and RNP import in and RNA and RNP export out of the nucleus of eukaryotic cells. Due to its genetic tractability, yeast offers a versatile system for investigating the chemical composition and molecular architecture of the NPC. In this context, protein A tagging is a com...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.2000.4223

    authors: Fahrenkrog B,Aris JP,Hurt EC,Panté N,Aebi U

    更新日期:2000-04-01 00:00:00

  • TDP-43 localizes in mRNA transcription and processing sites in mammalian neurons.

    abstract::TDP-43 is a RNA/DNA-binding protein structurally related to nuclear hnRNP proteins. Previous biochemical studies have shown that this nuclear protein plays a role in the regulation of gene transcription, alternative splicing and mRNA stability. Despite the ubiquitous distribution of TDP-43, the growing list of TDP-43 ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2009.06.006

    authors: Casafont I,Bengoechea R,Tapia O,Berciano MT,Lafarga M

    更新日期:2009-09-01 00:00:00

  • Capsids of tricorn protease studied by electron cryomicroscopy.

    abstract::Tricorn protease from the archaeon Thermoplasma acidophilum acts "downstream" of the proteasome; in conjunction with its aminopeptidase cofactors it converts peptides generated by the proteasome into free amino acids. The basic functional unit of Tricorn is a homohexamer of the 121-kDa subunit, 20 of which can assembl...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1999.4169

    authors: Walz J,Koster AJ,Tamura T,Baumeister W

    更新日期:1999-12-01 00:00:00

  • Automated image acquisition and processing using a new generation of 4K x 4K CCD cameras for cryo electron microscopic studies of macromolecular assemblies.

    abstract::We have previously reported the development of AutoEM, a software package for semi-automated acquisition of data from a transmission electron microscope. In continuing efforts to improve the speed of structure determination of macromolecular assemblies by electron microscopy, we report here on the performance of a new...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/s1047-8477(03)00124-2

    authors: Zhang P,Borgnia MJ,Mooney P,Shi D,Pan M,O'Herron P,Mao A,Brogan D,Milne JL,Subramaniam S

    更新日期:2003-08-01 00:00:00

  • Three-dimensional network of Drosophila brain hemisphere.

    abstract::The first step to understanding brain function is to determine the brain's network structure. We report a three-dimensional analysis of the brain network of the fruit fly Drosophila melanogaster by synchrotron-radiation tomographic microscopy. A skeletonized wire model of the left half of the brain network was built b...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.08.012

    authors: Mizutani R,Saiga R,Takeuchi A,Uesugi K,Suzuki Y

    更新日期:2013-11-01 00:00:00

  • Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts.

    abstract::We present a sample preparation method for cryo-electron microscopy (cryo-EM) that requires only 3-20nL of sample to prepare a cryo-EM grid, depending on the protocol used. The sample is applied and spread on the grid by a microcapillary. The procedure does not involve any blotting steps, and real-time monitoring allo...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2016.11.002

    authors: Arnold SA,Albiez S,Bieri A,Syntychaki A,Adaixo R,McLeod RA,Goldie KN,Stahlberg H,Braun T

    更新日期:2017-03-01 00:00:00

  • 7A projection map of the S-layer protein sbpA obtained with trehalose-embedded monolayer crystals.

    abstract::Two-dimensional crystallization on lipid monolayers is a versatile tool to obtain structural information of proteins by electron microscopy. An inherent problem with this approach is to prepare samples in a way that preserves the crystalline order of the protein array and produces specimens that are sufficiently flat ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2007.06.002

    authors: Norville JE,Kelly DF,Knight TF Jr,Belcher AM,Walz T

    更新日期:2007-12-01 00:00:00

  • A near atomic resolution structure of a Melanocarpus albomyces laccase.

    abstract::We have solved a crystal structure from Melanocarpus albomyces laccase expressed in the filamentous fungus Trichoderma reesei (rMaL) at 1.3A resolution by using synchrotron radiation at 100K. At the moment, this is the highest resolution that has been attained for any multicopper oxidase. The present structure confirm...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2007.12.003

    authors: Hakulinen N,Andberg M,Kallio J,Koivula A,Kruus K,Rouvinen J

    更新日期:2008-04-01 00:00:00

  • Morphological changes of the nucleolus during oogenesis in oviparous teleost fish, Barbus barbus (L.).

    abstract::In fishes, like in amphibians, it is well established that variations in rRNA activity occur during oogenesis. Contrary to amphibians, however, little is known about the ultrastructural changes of the nucleolus during fish oogenesis. Evolution of the nucleolus has been followed during oogenesis in the teleost fish Bar...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2005.07.006

    authors: Thiry M,Poncin P

    更新日期:2005-10-01 00:00:00

  • Structural studies on tobacco streak virus coat protein: Insights into the pleomorphic nature of ilarviruses.

    abstract::Tobacco streak virus (TSV), the type member of Ilarvirus genus, is a major plant pathogen. TSV purified from infected plants consists of a ss-RNA genome encapsidated in spheroidal particles with diameters of 27, 30 and 33nm constructed from multiple copies of a single species of coat protein (CP) subunits. Apart from ...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2015.12.007

    authors: Gulati A,Alapati K,Murthy A,Savithri HS,Murthy MR

    更新日期:2016-02-01 00:00:00

  • Crystal nucleation and near-epitaxial growth in nacre.

    abstract::Nacre is the iridescent inner lining of many mollusk shells, with a unique lamellar structure at the sub-micron scale, and remarkable resistance to fracture. Despite extensive studies, nacre formation mechanisms remain incompletely understood. Here we present 20-nm, 2°-resolution polarization-dependent imaging contras...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2013.10.002

    authors: Olson IC,Blonsky AZ,Tamura N,Kunz M,Pokroy B,Romao CP,White MA,Gilbert PU

    更新日期:2013-12-01 00:00:00

  • Formation of biomineral iron oxides compounds in a Fe hyperaccumulator plant: Imperata cylindrica (L.) P. Beauv.

    abstract::We report a detailed work of composition and location of naturally formed iron biominerals in plant cells tissues grown in iron rich environments as Imperata cylindrica. This perennial grass grows on the Tinto River banks (Iberian Pyritic Belt) in an extreme acidic ecosystem (pH∼2.3) with high concentration of dissolv...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2015.11.005

    authors: Fuente V,Rufo L,Juárez BH,Menéndez N,García-Hernández M,Salas-Colera E,Espinosa A

    更新日期:2016-01-01 00:00:00

  • The canine baculum: the structure and mechanical properties of an unusual bone.

    abstract::The baculum is an extraskeletal bone located in the penis of a few species in several orders of mammals such as carnivores, insectivores, rodents, bats and primates. This study aims to describe the structure, architecture and mechanical properties of the canine baculum. To this end canine bacula from castrated and unc...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2011.06.006

    authors: Sharir A,Israeli D,Milgram J,Currey JD,Monsonego-Ornan E,Shahar R

    更新日期:2011-09-01 00:00:00

  • The bacteriocin AS-48 requires dimer dissociation followed by hydrophobic interactions with the membrane for antibacterial activity.

    abstract::The molecular mechanism underlining the antibacterial activity of the bacteriocin AS-48 is not known, and two different and opposite alternatives have been proposed. Available data suggested that the interaction of positively charged amino acids of AS-48 with the membrane would produce membrane destabilization and dis...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2015.03.006

    authors: Cebrián R,Martínez-Bueno M,Valdivia E,Albert A,Maqueda M,Sánchez-Barrena MJ

    更新日期:2015-05-01 00:00:00

  • Type I collagen-phosphophoryn interactions: specificity of the monomer-monomer binding.

    abstract::It has been postulated that phosphophoryn (PP) molecules bind specifically to type I collagen fibrils as the key event in inducing matrix mineralization in dentin. The nature and specificity of the collagen molecule-PP interaction has been examined by rotary shadowing-electron microscopy of mixtures of native, monomer...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1006/jsbi.1998.4025

    authors: Dahl T,Sabsay B,Veis A

    更新日期:1998-10-01 00:00:00

  • Structure of the cytochrome complex SoxXA of Paracoccus pantotrophus, a heme enzyme initiating chemotrophic sulfur oxidation.

    abstract::The sulfur-oxidizing enzyme system (Sox) of the chemotroph Paracoccus pantotrophus is composed of several proteins, which together oxidize hydrogen sulfide, sulfur, thiosulfate or sulfite and transfers the gained electrons to the respiratory chain. The hetero-dimeric cytochrome c complex SoxXA functions as heme enzyme...

    journal_title:Journal of structural biology

    pub_type: 杂志文章

    doi:10.1016/j.jsb.2005.09.002

    authors: Dambe T,Quentmeier A,Rother D,Friedrich C,Scheidig AJ

    更新日期:2005-12-01 00:00:00