Genetic analyses reveal independent domestication origins of the emerging oil crop Paeonia ostii, a tree peony with a long-term cultivation history.

Abstract:

:Paeonia ostii, a member of tree peony, is an emerging oil crop with important medical and oil uses and widely cultivated in China. Dissolving the genetic diversity and domestication history of this species is important for further genetic improvements and deployments. We firstly selected 29 simple sequence repeats (SSRs) via transcriptome mining, segregation analyses and polymorphism characterizations; then, 901 individuals from the range-wide samples were genotyped using well-characterized SSR markers. We observed moderate genetic diversity among individuals, and Shaanxi Province was identified as the center of genetic diversity for our cultivated plants. Five well-separated gene pools were detected by STRUCTURE analyses, and the results suggested that multiple independent domestication origins occurred in Shaanxi Province and Tongling City (Anhui Province). Taken together, the genetic evidence and the historical records suggest multiple long-distance introductions after the plant was domesticated in Shandong, Henan and Hunan provinces. The present study provides the first genetic evaluation of the domestication history of P. ostii, and our results provide an important reference for further genetic improvements and deployments of this important crop.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Peng LP,Cai CF,Zhong Y,Xu XX,Xian HL,Cheng FY,Mao JF

doi

10.1038/s41598-017-04744-z

subject

Has Abstract

pub_date

2017-07-13 00:00:00

pages

5340

issue

1

issn

2045-2322

pii

10.1038/s41598-017-04744-z

journal_volume

7

pub_type

杂志文章
  • Moderate drop in water table increases peatland vulnerability to post-fire regime shift.

    abstract::Northern and tropical peatlands represent a globally significant carbon reserve accumulated over thousands of years of waterlogged conditions. It is unclear whether moderate drying predicted for northern peatlands will stimulate burning and carbon losses as has occurred in their smaller tropical counterparts where the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08063

    authors: Kettridge N,Turetsky MR,Sherwood JH,Thompson DK,Miller CA,Benscoter BW,Flannigan MD,Wotton BM,Waddington JM

    更新日期:2015-01-27 00:00:00

  • Identification of the amino acid position controlling the different enzymatic activities in walnut tyrosinase isoenzymes (jrPPO1 and jrPPO2).

    abstract::Polyphenol oxidases (PPOs) are ubiquitously distributed among plants, bacteria, fungi and animals. They catalyze the hydroxylation of monophenols (monophenolase activity) and the oxidation of o-diphenols (diphenolase activity) to o-quinones. PPOs are commonly present as an isoenzyme family. In walnut (Juglans regia), ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67415-6

    authors: Panis F,Rompel A

    更新日期:2020-07-02 00:00:00

  • Convergent Evolution of Copy Number Alterations in Multi-Centric Hepatocellular Carcinoma.

    abstract::In the recent years, new molecular methods have been proposed to discriminate multicentric hepatocellular carcinomas (HCC) from intrahepatic metastases. Some of these methods utilize sequencing data to assess similarities between cancer genomes, whilst other achieved the same results with transcriptome and methylome d...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-40843-9

    authors: Lackner C,Quagliata L,Cross W,Ribi S,Heinimann K,Paradiso V,Quintavalle C,Kovacova M,Baumhoer D,Piscuoglio S,Terracciano L,Kovac M

    更新日期:2019-03-14 00:00:00

  • Metasurface-based broadband hologram with high tolerance to fabrication errors.

    abstract::With new degrees of freedom to achieve full control of the optical wavefront, metasurfaces could overcome the fabrication embarrassment faced by the metamaterials. In this paper, a broadband hologram using metasurface consisting of elongated nanoapertures array with different orientations has been experimentally demon...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19856

    authors: Zhang X,Jin J,Wang Y,Pu M,Li X,Zhao Z,Gao P,Wang C,Luo X

    更新日期:2016-01-28 00:00:00

  • Parallel Analysis of 124 Universal SNPs for Human Identification by Targeted Semiconductor Sequencing.

    abstract::SNPs, abundant in human genome with lower mutation rate, are attractive to genetic application like forensic, anthropological and evolutionary studies. Universal SNPs showing little allelic frequency variation among populations while remaining highly informative for human identification were obtained from previous stu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18683

    authors: Zhang S,Bian Y,Zhang Z,Zheng H,Wang Z,Zha L,Cai J,Gao Y,Ji C,Hou Y,Li C

    更新日期:2015-12-22 00:00:00

  • Glaulactams A-C, daphniphyllum alkaloids from Daphniphyllum glaucescens.

    abstract::Glaulactams A-C (1-3), which possess a novel skeleton, as well as the known compound daphmanidin B (4), were isolated from the leaves of Daphniphyllum glaucescens and separated using ion-exchange chromatography aided by NMR fingerprinting. Their structures, including their absolute configurations, were elucidated by s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33748-6

    authors: Chao CH,Cheng JC,Gonçalves TP,Huang KW,Lin CC,Huang HC,Hwang SY,Wu YC

    更新日期:2018-10-18 00:00:00

  • The greenhouse gas offset potential from seagrass restoration.

    abstract::Awarding CO2 offset credits may incentivize seagrass restoration projects and help reverse greenhouse gas (GHG) emissions from global seagrass loss. However, no study has quantified net GHG removal from the atmosphere from a seagrass restoration project, which would require coupled Corg stock and GHG flux enhancement ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64094-1

    authors: Oreska MPJ,McGlathery KJ,Aoki LR,Berger AC,Berg P,Mullins L

    更新日期:2020-04-30 00:00:00

  • Periostin as a novel biomarker for postoperative recurrence of chronic rhinosinitis with nasal polyps.

    abstract::We previously reported that chronic rhinosinusitis with nasal polyps (CRSwNP) was subdivided into four chronic rhinosinusitis (CRS) subtypes using the JESREC scoring system. We sought to identify the gene expression profile and biomarkers related with CRSwNP by RNA-sequence. RNA-sequencing was performed to identify di...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29612-2

    authors: Ninomiya T,Noguchi E,Haruna T,Hasegawa M,Yoshida T,Yamashita Y,Okano M,Yoshida N,Haruna S,Sakuma Y,Ohta S,Ono J,Izuhara K,Okada M,Kidoguchi M,Tokunaga T,Okamoto M,Kanno M,Sakashita M,Takabayashi T,Narita N,Fujie

    更新日期:2018-07-30 00:00:00

  • A Novel Recombinant Enterovirus Type EV-A89 with Low Epidemic Strength in Xinjiang, China.

    abstract::Enterovirus A89 (EV-A89) is a novel member of the EV-A species. To date, only one full-length genome sequence (the prototype strain) has been published. Here, we report the molecular identification and genomic characterization of a Chinese EV-A89 strain, KSYPH-TRMH22F/XJ/CHN/2011, isolated in 2011 from a contact of an...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18558

    authors: Fan Q,Zhang Y,Hu L,Sun Q,Cui H,Yan D,Sikandaner H,Tang H,Wang D,Zhu Z,Zhu S,Xu W

    更新日期:2015-12-21 00:00:00

  • Identification of a novel interaction between corticotropin releasing hormone (Crh) and macroautophagy.

    abstract::In inflammatory bowel disease (IBD), compromised restitution of the epithelial barrier contributes to disease severity. Owing to the complexity in the pathogenesis of IBD, a variety of factors have been implicated in its progress. In this study, we report a functional interaction between macroautophagy and Corticotrop...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23342

    authors: Giannogonas P,Apostolou A,Manousopoulou A,Theocharis S,Macari SA,Psarras S,Garbis SD,Pothoulakis C,Karalis KP

    更新日期:2016-03-18 00:00:00

  • Large diameter scleral lens benefits for Asians with intractable ocular surface diseases: a prospective, single-arm clinical trial.

    abstract::To report the efficacy and safety of large diameter scleral lenses and determine their suitability in Asian subjects with intractable ocular surface diseases. This prospective study enrolled intractable ocular surface diseases subjects with uncorrected visual acuity > counting finger but ≥ 0.3 logMAR and best-correcte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-82010-z

    authors: Moon J,Lee SM,Hyon JY,Kim MK,Oh JY,Choi HJ

    更新日期:2021-01-27 00:00:00

  • Local decomposition induced by dislocation motions inside precipitates in an Al-alloy.

    abstract::Dislocations in crystals are linear crystallographic defects, which move in lattice when crystals are plastically deformed. Motion of a partial dislocation may remove or create stacking fault characterized with a partial of a lattice translation vector. Here we report that motion of partial dislocations inside an inte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01039

    authors: Yang B,Zhou YT,Chen D,Ma XL

    更新日期:2013-01-01 00:00:00

  • Efficacy of three-dimensionally printed polycaprolactone/beta tricalcium phosphate scaffold on mandibular reconstruction.

    abstract::It has been demonstrated that development of three-dimensional printing technology has supported the researchers and surgeons to apply the bone tissue engineering to the oromandibular reconstruction. In this study, poly caprolactone/beta tricalcium phosphate (PCL/β-TCP) scaffolds were fabricated by multi-head depositi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61944-w

    authors: Lee S,Choi D,Shim JH,Nam W

    更新日期:2020-03-18 00:00:00

  • Creation of vortices by torque in multidimensional media with inhomogeneous defocusing nonlinearity.

    abstract::Recently, a new class of nonlinear systems was introduced, in which the self-trapping of fundamental and vortical localized modes in space of dimension D is supported by cubic self-repulsion with a strength growing as a function of the distance from the center, r, at any rate faster that r(D). These systems support ro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09420

    authors: Driben R,Meier T,Malomed BA

    更新日期:2015-03-24 00:00:00

  • Isophorone derivatives as a new structural motif of aggregation pheromones in Curculionidae.

    abstract::The beetle Homalinotus depressus (Coleoptera: Curculionidae) is a major pest of coconuts in the Northern region of Brazil, for which environmentally friendly methods of control are desired. Behavioral responses of H. depressus to airborne volatile extracts from conspecifics suggested the presence of a male-produced ag...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-37156-8

    authors: Vidal DM,Moreira MAB,Coracini MDA,Zarbin PHG

    更新日期:2019-01-28 00:00:00

  • KANSL2 and MBNL3 are regulators of pancreatic ductal adenocarcinoma invasion.

    abstract::Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal forms of cancer. One major reason for this is that PDAC quickly metastasizes to other organs, thereby making its treatment difficult. The molecular machinery driving PDAC metastasis is still poorly understood. In this study, we applied an unbiased appro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58448-y

    authors: Oladimeji PO,Bakke J,Wright WC,Chen T

    更新日期:2020-01-30 00:00:00

  • Nuclear shape, protrusive behaviour and in vivo retention of human bone marrow mesenchymal stromal cells is controlled by Lamin-A/C expression.

    abstract::Culture expanded mesenchymal stromal cells (MSCs) are being extensively studied for therapeutic applications, including treatment of graft-versus-host disease, osteogenesis imperfecta and for enhancing engraftment of hematopoietic stem cells after transplantation. Thus far, clinical trials have shown that the therapeu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50955-x

    authors: Dorland YL,Cornelissen AS,Kuijk C,Tol S,Hoogenboezem M,van Buul JD,Nolte MA,Voermans C,Huveneers S

    更新日期:2019-10-07 00:00:00

  • Exploring the effects of anodal and cathodal high definition transcranial direct current stimulation targeting the dorsal anterior cingulate cortex.

    abstract::The dorsal anterior cingulate cortex (dACC) has been identified as a core region affected by many disorders, representing a promising target for neuromodulation. High Definition-transcranial Direct Current Stimulation (HD-tDCS) is a non-invasive neuromodulation technique that has already shown promising outcomes and h...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-018-22730-x

    authors: To WT,Eroh J,Hart J Jr,Vanneste S

    更新日期:2018-03-13 00:00:00

  • Photodynamic therapy in oral lichen planus: A prospective case-controlled pilot study.

    abstract::Oral lichen planus (OLP) is a common, chronic relapsing inflammatory disorder of the mucous membranes, which causes major discomfort. Current treatment includes topical/systemic glucocorticoids, immune modulators and systemic immunosuppressants, which may lead to considerable side-effects. The aim of this study was to...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58548-9

    authors: Cosgarea R,Pollmann R,Sharif J,Schmidt T,Stein R,Bodea A,Auschill T,Sculean A,Eming R,Greene B,Hertl M,Arweiler N

    更新日期:2020-02-03 00:00:00

  • Nondestructive Detection and Quantification of Blueberry Bruising using Near-infrared (NIR) Hyperspectral Reflectance Imaging.

    abstract::Currently, blueberry bruising is evaluated by either human visual/tactile inspection or firmness measurement instruments. These methods are destructive, time-consuming, and subjective. The goal of this paper was to develop a non-destructive approach for blueberry bruising detection and quantification. Experiments were...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35679

    authors: Jiang Y,Li C,Takeda F

    更新日期:2016-10-21 00:00:00

  • Tuning the photo-response in monolayer MoS2 by plasmonic nano-antenna.

    abstract::Monolayer molybdenum disulfide (MoS2) has recently attracted intense interests due to its remarkable optical properties of valley-selected optical response, strong nonlinear wave mixing and photocurrent/photovoltaic generation and many corresponding potential applications. However, the nature of atomic-thin thickness ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23626

    authors: Li J,Ji Q,Chu S,Zhang Y,Li Y,Gong Q,Liu K,Shi K

    更新日期:2016-03-31 00:00:00

  • Greenhouse gas emissions and carbon sequestration by agroforestry systems in southeastern Brazil.

    abstract::Agrosilvopastoral and silvopastoral systems can increase carbon sequestration, offset greenhouse gas (GHG) emissions and reduce the carbon footprint generated by animal production. The objective of this study was to estimate GHG emissions, the tree and grass aboveground biomass production and carbon storage in differe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16821-4

    authors: Torres CMME,Jacovine LAG,Nolasco de Olivera Neto S,Fraisse CW,Soares CPB,de Castro Neto F,Ferreira LR,Zanuncio JC,Lemes PG

    更新日期:2017-12-01 00:00:00

  • Author Correction: Visualization and quantification of the degenerative pattern of the talus in unilateral varus ankle osteoarthritis.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-60514-4

    authors: Seki H,Ogihara N,Kokubo T,Suda Y,Ishii K,Nagura T

    更新日期:2020-02-19 00:00:00

  • A nucleotide-controlled conformational switch modulates the activity of eukaryotic IMP dehydrogenases.

    abstract::Inosine-5'-monophosphate dehydrogenase (IMPDH) is an essential enzyme for nucleotide metabolism and cell proliferation. Despite IMPDH is the target of drugs with antiviral, immunosuppressive and antitumor activities, its physiological mechanisms of regulation remain largely unknown. Using the enzyme from the industria...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02805-x

    authors: Buey RM,Fernández-Justel D,Marcos-Alcalde Í,Winter G,Gómez-Puertas P,de Pereda JM,Luis Revuelta J

    更新日期:2017-06-01 00:00:00

  • A process to control light in a micro resonator through a coupling modulation by surface acoustic waves.

    abstract::A novel process to control light through the coupling modulation by surface acoustic wave (SAW) is presented in an optical micro resonator. An optical waveguide modulator of a racetrack resonator on silicon-on-insulator (SOI) technology is took as an example to explore the mechanism. A finite-difference time-domain (F...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30681

    authors: Fan G,Li Y,Hu C,Lei L,Guo Y

    更新日期:2016-08-03 00:00:00

  • Gradient Relationship between Increased Mean Corpuscular Volume and Mortality Associated with Cerebral Ischemic Stroke and Ischemic Heart Disease: A Longitudinal Study on 66,294 Taiwanese.

    abstract::The gradient relationship between mean corpuscular volume (MCV) and mortality due to ischemic vascular disease has not been researched using a large-scale population-based study. This study evaluated the association between MCV and death attributable to cerebrovascular disease (CVD) and cardiovascular disease (CAD) in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-34403-w

    authors: Wu TH,Fann JC,Chen SL,Yen AM,Wen CJ,Lu YR,Chen HH,Chiu SY,Liou HH

    更新日期:2018-11-08 00:00:00

  • Growth and Morbidity of Gambian Infants are Influenced by Maternal Milk Oligosaccharides and Infant Gut Microbiota.

    abstract::Human milk oligosaccharides (HMOs) play an important role in the health of an infant as substrate for beneficial gut bacteria. Little is known about the effects of HMO composition and its changes on the morbidity and growth outcomes of infants living in areas with high infection rates. Mother's HMO composition and inf...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40466

    authors: Davis JC,Lewis ZT,Krishnan S,Bernstein RM,Moore SE,Prentice AM,Mills DA,Lebrilla CB,Zivkovic AM

    更新日期:2017-01-12 00:00:00

  • Live cell immunogold labelling of RNA polymerase II.

    abstract::Labeling nuclear proteins with electron dense probes in living cells has been a major challenge due to their inability to penetrate into nuclei. We developed a lipid-based approach for delivering antibodies coupled to 0.8 nm ultrasmall gold particles into the nucleus to label RNA polymerase II. Focussed Ion Beam slici...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08324

    authors: Orlov I,Schertel A,Zuber G,Klaholz B,Drillien R,Weiss E,Schultz P,Spehner D

    更新日期:2015-02-09 00:00:00

  • Optimal multi-photon phase sensing with a single interference fringe.

    abstract::Quantum entanglement can help to increase the precision of optical phase measurements beyond the shot noise limit (SNL) to the ultimate Heisenberg limit. However, the N-photon parity measurements required to achieve this optimal sensitivity are extremely difficult to realize with current photon detection technologies,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep02684

    authors: Xiang GY,Hofmann HF,Pryde GJ

    更新日期:2013-09-25 00:00:00

  • Sleep apnea and diabetes mellitus are independently associated with cardiovascular events and hospitalization for heart failure after coronary artery bypass grafting.

    abstract::The relative and combined effects of sleep apnea with diabetes mellitus (DM) on cardiovascular outcomes in patients undergoing coronary artery bypass grafting (CABG) remain unknown. In this secondary analysis of data from the SABOT study, 1007 patients were reclassified into four groups based on their sleep apnea and ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-78700-9

    authors: Aung AT,Koo CY,Tam WW,Chen Z,Kristanto W,Sim HW,Kojodjojo P,Kofidis T,Lee CH

    更新日期:2020-12-10 00:00:00