Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution.

Abstract:

:The straight-tusked elephants Palaeoloxodon spp. were widespread across Eurasia during the Pleistocene. Phylogenetic reconstructions using morphological traits have grouped them with Asian elephants (Elephas maximus), and many paleontologists place Palaeoloxodon within Elephas. Here, we report the recovery of full mitochondrial genomes from four and partial nuclear genomes from two P. antiquus fossils. These fossils were collected at two sites in Germany, Neumark-Nord and Weimar-Ehringsdorf, and likely date to interglacial periods ~120 and ~244 thousand years ago, respectively. Unexpectedly, nuclear and mitochondrial DNA analyses suggest that P. antiquus was a close relative of extant African forest elephants (Loxodonta cyclotis). Species previously referred to Palaeoloxodon are thus most parsimoniously explained as having diverged from the lineage of Loxodonta, indicating that Loxodonta has not been constrained to Africa. Our results demonstrate that the current picture of elephant evolution is in need of substantial revision.

journal_name

Elife

journal_title

eLife

authors

Meyer M,Palkopoulou E,Baleka S,Stiller M,Penkman KEH,Alt KW,Ishida Y,Mania D,Mallick S,Meijer T,Meller H,Nagel S,Nickel B,Ostritz S,Rohland N,Schauer K,Schüler T,Roca AL,Reich D,Shapiro B,Hofreiter M

doi

10.7554/eLife.25413

subject

Has Abstract

pub_date

2017-06-06 00:00:00

issn

2050-084X

journal_volume

6

pub_type

杂志文章

相关文献

eLife文献大全
  • Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids.

    abstract::Over the past century, soybean oil (SBO) consumption in the United States increased dramatically. The main SBO fatty acid, linoleic acid (18:2), inhibits in vitro the growth of lactobacilli, beneficial members of the small intestinal microbiota. Human-associated lactobacilli have declined in prevalence in Western micr...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.32581

    authors: Di Rienzi SC,Jacobson J,Kennedy EA,Bell ME,Shi Q,Waters JL,Lawrence P,Brenna JT,Britton RA,Walter J,Ley RE

    更新日期:2018-03-27 00:00:00

  • A Phytophthora effector recruits a host cytoplasmic transacetylase into nuclear speckles to enhance plant susceptibility.

    abstract::Oomycete pathogens secrete host cell-entering effector proteins to manipulate host immunity during infection. We previously showed that PsAvh52, an early-induced RxLR effector secreted from the soybean root rot pathogen, Phytophthora sojae, could suppress plant immunity. Here, we found that PsAvh52 is required for ful...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.40039

    authors: Li H,Wang H,Jing M,Zhu J,Guo B,Wang Y,Lin Y,Chen H,Kong L,Ma Z,Wang Y,Ye W,Dong S,Tyler B,Wang Y

    更新日期:2018-10-22 00:00:00

  • Shade-induced nuclear localization of PIF7 is regulated by phosphorylation and 14-3-3 proteins in Arabidopsis.

    abstract::Shade avoidance syndrome enables shaded plants to grow and compete effectively against their neighbors. In Arabidopsis, the shade-induced de-phosphorylation of the transcription factor PIF7 (PHYTOCHROME-INTERACTING FACTOR 7) is the key event linking light perception to stem elongation. However, the mechanism through w...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.31636

    authors: Huang X,Zhang Q,Jiang Y,Yang C,Wang Q,Li L

    更新日期:2018-06-21 00:00:00

  • Dendritic NMDA receptors in parvalbumin neurons enable strong and stable neuronal assemblies.

    abstract::Parvalbumin-expressing (PV+) GABAergic interneurons mediate feedforward and feedback inhibition and have a key role in gamma oscillations and information processing. The importance of fast synaptic recruitment and action potential initiation and repolarization, and rapid synchronous GABA release by PV+ cells, is well ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.49872

    authors: Cornford JH,Mercier MS,Leite M,Magloire V,Häusser M,Kullmann DM

    更新日期:2019-10-28 00:00:00

  • Phenotypic diversity and temporal variability in a bacterial signaling network revealed by single-cell FRET.

    abstract::We present in vivo single-cell FRET measurements in the Escherichia coli chemotaxis system that reveal pervasive signaling variability, both across cells in isogenic populations and within individual cells over time. We quantify cell-to-cell variability of adaptation, ligand response, as well as steady-state output le...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.27455

    authors: Keegstra JM,Kamino K,Anquez F,Lazova MD,Emonet T,Shimizu TS

    更新日期:2017-12-12 00:00:00

  • Metabolic control of cellular immune-competency by odors in Drosophila.

    abstract::Studies in different animal model systems have revealed the impact of odors on immune cells; however, any understanding on why and how odors control cellular immunity remained unclear. We find that Drosophila employ an olfactory-immune cross-talk to tune a specific cell type, the lamellocytes, from hematopoietic-proge...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.60376

    authors: Madhwal S,Shin M,Kapoor A,Goyal M,Joshi MK,Ur Rehman PM,Gor K,Shim J,Mukherjee T

    更新日期:2020-12-29 00:00:00

  • A recurrent regulatory change underlying altered expression and Wnt response of the stickleback armor plates gene EDA.

    abstract::Armor plate changes in sticklebacks are a classic example of repeated adaptive evolution. Previous studies identified ectodysplasin (EDA) gene as the major locus controlling recurrent plate loss in freshwater fish, though the causative DNA alterations were not known. Here we show that freshwater EDA alleles have cis-a...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.05290

    authors: O'Brown NM,Summers BR,Jones FC,Brady SD,Kingsley DM

    更新日期:2015-01-28 00:00:00

  • The synaptic ribbon is critical for sound encoding at high rates and with temporal precision.

    abstract::We studied the role of the synaptic ribbon for sound encoding at the synapses between inner hair cells (IHCs) and spiral ganglion neurons (SGNs) in mice lacking RIBEYE (RBEKO/KO). Electron and immunofluorescence microscopy revealed a lack of synaptic ribbons and an assembly of several small active zones (AZs) at each ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.29275

    authors: Jean P,Lopez de la Morena D,Michanski S,Jaime Tobón LM,Chakrabarti R,Picher MM,Neef J,Jung S,Gültas M,Maxeiner S,Neef A,Wichmann C,Strenzke N,Grabner C,Moser T

    更新日期:2018-01-12 00:00:00

  • Human motor fatigability as evoked by repetitive movements results from a gradual breakdown of surround inhibition.

    abstract::Motor fatigability emerges when demanding tasks are executed over an extended period of time. Here, we used repetitive low-force movements that cause a gradual reduction in movement speed (or 'motor slowing') to study the central component of fatigability in healthy adults. We show that motor slowing is associated wit...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.46750

    authors: Bächinger M,Lehner R,Thomas F,Hanimann S,Balsters J,Wenderoth N

    更新日期:2019-09-16 00:00:00

  • Shear stress activates ADAM10 sheddase to regulate Notch1 via the Piezo1 force sensor in endothelial cells.

    abstract::Mechanical force is a determinant of Notch signalling but the mechanism of force detection and its coupling to Notch are unclear. We propose a role for Piezo1 channels, which are mechanically-activated non-selective cation channels. In cultured microvascular endothelial cells, Piezo1 channel activation by either shear...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.50684

    authors: Caolo V,Debant M,Endesh N,Futers TS,Lichtenstein L,Bartoli F,Parsonage G,Jones EA,Beech DJ

    更新日期:2020-06-02 00:00:00

  • Dual midbrain and forebrain origins of thalamic inhibitory interneurons.

    abstract::The ubiquitous presence of inhibitory interneurons in the thalamus of primates contrasts with the sparsity of interneurons reported in mice. Here, we identify a larger than expected complexity and distribution of interneurons across the mouse thalamus, where all thalamic interneurons can be traced back to two developm...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.59272

    authors: Jager P,Moore G,Calpin P,Durmishi X,Salgarella I,Menage L,Kita Y,Wang Y,Kim DW,Blackshaw S,Schultz SR,Brickley S,Shimogori T,Delogu A

    更新日期:2021-02-01 00:00:00

  • Registered report: Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs.

    abstract::The Reproducibility Project: Cancer Biology seeks to address growing concerns about reproducibility in scientific research by conducting replications of selected experiments from a number of high-profile papers in the field of cancer biology. The papers, which were published between 2010 and 2012, were selected on the...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.12470

    authors: Phelps M,Coss C,Wang H,Cook M,Reproducibility Project: Cancer Biology.,Reproducibility Project Cancer Biology.

    更新日期:2016-03-01 00:00:00

  • Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies.

    abstract::Understanding how fungi specialize on their plant host is crucial for developing sustainable disease control. A traditional, centuries-old rice agro-system of the Yuanyang terraces was used as a model to show that virulence effectors of the rice blast fungus Magnaporthe oryzaeh play a key role in its specialization on...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.19377

    authors: Liao J,Huang H,Meusnier I,Adreit H,Ducasse A,Bonnot F,Pan L,He X,Kroj T,Fournier E,Tharreau D,Gladieux P,Morel JB

    更新日期:2016-12-23 00:00:00

  • Gi/o protein-coupled receptors in dopamine neurons inhibit the sodium leak channel NALCN.

    abstract::Dopamine (D2) receptors provide autoinhibitory feedback onto dopamine neurons through well-known interactions with voltage-gated calcium channels and G protein-coupled inwardly-rectifying potassium (GIRK) channels. Here, we reveal a third major effector involved in D2R modulation of dopaminergic neurons - the sodium l...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.40984

    authors: Philippart F,Khaliq ZM

    更新日期:2018-12-17 00:00:00

  • Orbitofrontal neurons signal sensory associations underlying model-based inference in a sensory preconditioning task.

    abstract::Using knowledge of the structure of the world to infer value is at the heart of model-based reasoning and relies on a circuit that includes the orbitofrontal cortex (OFC). Some accounts link this to the representation of biological significance or value by neurons in OFC, while other models focus on the representation...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.30373

    authors: Sadacca BF,Wied HM,Lopatina N,Saini GK,Nemirovsky D,Schoenbaum G

    更新日期:2018-03-07 00:00:00

  • ADAM17-dependent signaling is required for oncogenic human papillomavirus entry platform assembly.

    abstract::Oncogenic human papillomaviruses (HPV) are small DNA viruses that infect keratinocytes. After HPV binding to cell surface receptors, a cascade of molecular interactions mediates the infectious cellular internalization of virus particles. Aside from the virus itself, important molecular players involved in virus entry ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.44345

    authors: Mikuličić S,Finke J,Boukhallouk F,Wüstenhagen E,Sons D,Homsi Y,Reiss K,Lang T,Florin L

    更新日期:2019-05-20 00:00:00

  • The spinal cord is never at rest.

    abstract::Even when we are at rest, our spinal cords show spontaneous, yet well organised, fluctuations of activity that might reflect sensory and motor networks. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.03811

    authors: Eippert F,Tracey I

    更新日期:2014-08-05 00:00:00

  • Distinct regulation of dopamine D2S and D2L autoreceptor signaling by calcium.

    abstract::D2 autoreceptors regulate dopamine release throughout the brain. Two isoforms of the D2 receptor, D2S and D2L, are expressed in midbrain dopamine neurons. Differential roles of these isoforms as autoreceptors are poorly understood. By virally expressing the isoforms in dopamine neurons of D2 receptor knockout mice, th...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.09358

    authors: Gantz SC,Robinson BG,Buck DC,Bunzow JR,Neve RL,Williams JT,Neve KA

    更新日期:2015-08-26 00:00:00

  • Spatiotemporal regulation of autophagy during Caenorhabditis elegans aging.

    abstract::Autophagy has been linked to longevity in many species, but the underlying mechanisms are unclear. Using a GFP-tagged and a new tandem-tagged Atg8/LGG-1 reporter, we quantified autophagic vesicles and performed autophagic flux assays in multiple tissues of wild-type Caenorhabditis elegans and long-lived daf-2/insulin/...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.18459

    authors: Chang JT,Kumsta C,Hellman AB,Adams LM,Hansen M

    更新日期:2017-07-04 00:00:00

  • Akt-mTORC1 signaling regulates Acly to integrate metabolic input to control of macrophage activation.

    abstract::Macrophage activation/polarization to distinct functional states is critically supported by metabolic shifts. How polarizing signals coordinate metabolic and functional reprogramming, and the potential implications for control of macrophage activation, remains poorly understood. Here we show that IL-4 signaling co-opt...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.11612

    authors: Covarrubias AJ,Aksoylar HI,Yu J,Snyder NW,Worth AJ,Iyer SS,Wang J,Ben-Sahra I,Byles V,Polynne-Stapornkul T,Espinosa EC,Lamming D,Manning BD,Zhang Y,Blair IA,Horng T

    更新日期:2016-02-19 00:00:00

  • Calcium-dependent electrostatic control of anion access to the pore of the calcium-activated chloride channel TMEM16A.

    abstract::TMEM16A is a ligand-gated anion channel that is activated by intracellular Ca2+. This channel comprises two independent pores and closely apposed Ca2+ binding sites that are contained within each subunit of a homodimeric protein. Previously we characterized the influence of positively charged pore-lining residues on a...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.39122

    authors: Lam AK,Dutzler R

    更新日期:2018-10-12 00:00:00

  • Signalling through AMPA receptors on oligodendrocyte precursors promotes myelination by enhancing oligodendrocyte survival.

    abstract::Myelin, made by oligodendrocytes, is essential for rapid information transfer in the central nervous system. Oligodendrocyte precursors (OPs) receive glutamatergic synaptic input from axons but how this affects their development is unclear. Murine OPs in white matter express AMPA receptor (AMPAR) subunits GluA2, GluA3...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.28080

    authors: Kougioumtzidou E,Shimizu T,Hamilton NB,Tohyama K,Sprengel R,Monyer H,Attwell D,Richardson WD

    更新日期:2017-06-13 00:00:00

  • Selfing is the safest sex for Caenorhabditis tropicalis.

    abstract::Mating systems have profound effects on genetic diversity and compatibility. The convergent evolution of self-fertilization in three Caenorhabditis species provides a powerful lens to examine causes and consequences of mating system transitions. Among the selfers, Caenorhabditis tropicalis is the least genetically div...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.62587

    authors: Noble LM,Yuen J,Stevens L,Moya N,Persaud R,Moscatelli M,Jackson JL,Zhang G,Chitrakar R,Baugh LR,Braendle C,Andersen EC,Seidel HS,Rockman MV

    更新日期:2021-01-11 00:00:00

  • Building for the future.

    abstract::As the staff of the MRC Laboratory of Molecular Biology settle into their new building in Cambridge, its director Hugh Pelham explains the challenges of living up to its prestigious past. ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.00856

    authors: Pelham H

    更新日期:2013-05-28 00:00:00

  • Inhibition of mTORC1 by ER stress impairs neonatal β-cell expansion and predisposes to diabetes in the Akita mouse.

    abstract::Unresolved ER stress followed by cell death is recognized as the main cause of a multitude of pathologies including neonatal diabetes. A systematic analysis of the mechanisms of β-cell loss and dysfunction in Akita mice, in which a mutation in the proinsulin gene causes a severe form of permanent neonatal diabetes, sh...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.38472

    authors: Riahi Y,Israeli T,Yeroslaviz R,Chimenez S,Avrahami D,Stolovich-Rain M,Alter I,Sebag M,Polin N,Bernal-Mizrachi E,Dor Y,Cerasi E,Leibowitz G

    更新日期:2018-11-09 00:00:00

  • Gdf3 is required for robust Nodal signaling during germ layer formation and left-right patterning.

    abstract::Vertebrate embryonic patterning depends on signaling from Nodal, a TGFβ superfamily member. There are three Nodal orthologs in zebrafish; southpaw directs left-right asymmetries, while squint and cyclops function earlier to pattern mesendoderm. TGFβ member Vg1 is implicated in mesoderm formation but the role of the ze...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.28635

    authors: Pelliccia JL,Jindal GA,Burdine RD

    更新日期:2017-11-15 00:00:00

  • Ubiquitin-dependent regulation of a conserved DMRT protein controls sexually dimorphic synaptic connectivity and behavior.

    abstract::Sex-specific synaptic connectivity is beginning to emerge as a remarkable, but little explored feature of animal brains. We describe here a novel mechanism that promotes sexually dimorphic neuronal function and synaptic connectivity in the nervous system of the nematode Caenorhabditis elegans. We demonstrate that a ph...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.59614

    authors: Bayer EA,Stecky RC,Neal L,Katsamba PS,Ahlsen G,Balaji V,Hoppe T,Shapiro L,Oren-Suissa M,Hobert O

    更新日期:2020-10-06 00:00:00

  • C. elegans neurons have functional dendritic spines.

    abstract::Dendritic spines are specialized postsynaptic structures that transduce presynaptic signals, are regulated by neural activity and correlated with learning and memory. Most studies of spine function have focused on the mammalian nervous system. However, spine-like protrusions have been reported in C. elegans (Philbrook...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.47918

    authors: Cuentas-Condori A,Mulcahy B,He S,Palumbos S,Zhen M,Miller DM 3rd

    更新日期:2019-10-04 00:00:00

  • An unexpected role for the yeast nucleotide exchange factor Sil1 as a reductant acting on the molecular chaperone BiP.

    abstract::Unfavorable redox conditions in the endoplasmic reticulum (ER) can decrease the capacity for protein secretion, altering vital cell functions. While systems to manage reductive stress are well-established, how cells cope with an overly oxidizing ER remains largely undefined. In previous work (Wang et al., 2014), we de...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.24141

    authors: Siegenthaler KD,Pareja KA,Wang J,Sevier CS

    更新日期:2017-03-03 00:00:00

  • Body ownership promotes visual awareness.

    abstract::The sense of ownership of one's body is important for survival, e.g., in defending the body against a threat. However, in addition to affecting behavior, it also affects perception of the world. In the case of visuospatial perception, it has been shown that the sense of ownership causes external space to be perceptual...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.26022

    authors: van der Hoort B,Reingardt M,Ehrsson HH

    更新日期:2017-08-17 00:00:00