Multi-component quantitative magnetic resonance imaging by phasor representation.

Abstract:

:Quantitative magnetic resonance imaging (qMRI) is a versatile, non-destructive and non-invasive tool in life, material, and medical sciences. When multiple components contribute to the signal in a single pixel, however, it is difficult to quantify their individual contributions and characteristic parameters. Here we introduce the concept of phasor representation to qMRI to disentangle the signals from multiple components in imaging data. Plotting the phasors allowed for decomposition, unmixing, segmentation and quantification of our in vivo data from a plant stem, a human and mouse brain and a human prostate. In human brain images, we could identify 3 main T 2 components and 3 apparent diffusion coefficients; in human prostate 5 main contributing spectral shapes were distinguished. The presented phasor analysis is model-free, fast and accurate. Moreover, we also show that it works for undersampled data.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Vergeldt FJ,Prusova A,Fereidouni F,Amerongen HV,Van As H,Scheenen TWJ,Bader AN

doi

10.1038/s41598-017-00864-8

subject

Has Abstract

pub_date

2017-04-13 00:00:00

pages

861

issue

1

issn

2045-2322

pii

10.1038/s41598-017-00864-8

journal_volume

7

pub_type

杂志文章
  • Therapeutic potential of N-acetylcysteine in acrylamide acute neurotoxicity in adult zebrafish.

    abstract::Two essential key events in acrylamide (ACR) acute neurotoxicity are the formation of adducts with nucleophilic sulfhydryl groups on cysteine residues of selected proteins in the synaptic terminals and the depletion of the glutathione (GSx) stores in neural tissue. The use of N-acetylcysteine (NAC) has been recently p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53154-w

    authors: Faria M,Prats E,Gómez-Canela C,Hsu CY,Arick MA 2nd,Bedrossiantz J,Orozco M,Garcia-Reyero N,Ziv T,Ben-Lulu S,Admon A,Gómez-Oliván LM,Raldúa D

    更新日期:2019-11-11 00:00:00

  • A genome-wide enhancer/suppressor screen for Dube3a interacting genes in Drosophila melanogaster.

    abstract::The genetics underlying autism spectrum disorder (ASD) are complex. Approximately 3-5% of ASD cases arise from maternally inherited duplications of 15q11.2-q13.1, termed Duplication 15q syndrome (Dup15q). 15q11.2-q13.1 includes the gene UBE3A which is believed to underlie ASD observed in Dup15q syndrome. UBE3A is an E...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38663-y

    authors: Hope KA,McGinn A,Reiter LT

    更新日期:2019-02-20 00:00:00

  • Beyond sodefrin: evidence for a multi-component pheromone system in the model newt Cynops pyrrhogaster (Salamandridae).

    abstract::Sodefrin, a decapeptide isolated from the male dorsal gland of the Japanese fire belly newt Cynops pyrrhogaster, was the first peptide pheromone identified from a vertebrate. The fire belly salamander and sodefrin have become a model for sex pheromone investigation in aquatically courting salamanders ever since. Subse...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21880

    authors: Van Bocxlaer I,Maex M,Treer D,Janssenswillen S,Janssens R,Vandebergh W,Proost P,Bossuyt F

    更新日期:2016-03-03 00:00:00

  • The role of city size and urban form in the surface urban heat island.

    abstract::Urban climate is determined by a variety of factors, whose knowledge can help to attenuate heat stress in the context of ongoing urbanization and climate change. We study the influence of city size and urban form on the Urban Heat Island (UHI) phenomenon in Europe and find a complex interplay between UHI intensity and...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04242-2

    authors: Zhou B,Rybski D,Kropp JP

    更新日期:2017-07-06 00:00:00

  • Highly Efficient F, Cu doped TiO2 anti-bacterial visible light active photocatalytic coatings to combat hospital-acquired infections.

    abstract::Bacterial infections are a major threat to the health of patients in healthcare facilities including hospitals. One of the major causes of patient morbidity is infection with Staphylococcus aureus. One of the the most dominant nosocomial bacteria, Methicillin Resistant Staphylococcus aureus (MRSA) have been reported t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24770

    authors: Leyland NS,Podporska-Carroll J,Browne J,Hinder SJ,Quilty B,Pillai SC

    更新日期:2016-04-21 00:00:00

  • Refining the genetic structure and relationships of European cattle breeds through meta-analysis of worldwide genomic SNP data, focusing on Italian cattle.

    abstract::The availability of genotyping assays has allowed the detailed evaluation of cattle genetic diversity worldwide. However, these comprehensive studies did not include some local European populations, including autochthonous Italian cattle. In this study, we assembled a large-scale, genome-wide dataset of single nucleot...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-71375-2

    authors: Mastrangelo S,Tolone M,Ben Jemaa S,Sottile G,Di Gerlando R,Cortés O,Senczuk G,Portolano B,Pilla F,Ciani E

    更新日期:2020-09-03 00:00:00

  • Tailoring Mechanically Robust Poly(m-phenylene isophthalamide) Nanofiber/nets for Ultrathin High-Efficiency Air Filter.

    abstract::Effective promotion of air filtration applications proposed for fibers requires their real nanoscale diameter, optimized pore structure, and high service strength; however, creating such filter medium has proved to be a tremendous challenge. This study first establishes a strategy to design and fabricate novel poly(m-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40550

    authors: Zhang S,Liu H,Yin X,Li Z,Yu J,Ding B

    更新日期:2017-01-11 00:00:00

  • Cerium/diethyldithiocarbamate complex as a novel corrosion inhibitive pigment for AA2024-T3.

    abstract::In this work, cerium-diethyldithiocarbamate (Ce-DEDTC) complex was synthesized as a novel anti-corrosion pigment. The structure of the synthesized pigment was characterized by employing Fourier transfer infrared spectroscopy, X-ray diffraction, thermogravimetric analysis, inductively coupled plasma optical emission sp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61946-8

    authors: Mohammadi I,Shahrabi T,Mahdavian M,Izadi M

    更新日期:2020-03-19 00:00:00

  • Two-Aperture Microfluidic Probes as Flow Dipole: Theory and Applications.

    abstract::A microfluidic probe (MFP) is a mobile channel-less microfluidic system under which a fluid is injected from an aperture into an open space, hydrodynamically confined by a surrounding fluid, and entirely re-aspirated into a second aperture. Various MFPs have been developed, and have been used for applications ranging ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11943

    authors: Safavieh M,Qasaimeh MA,Vakil A,Juncker D,Gervais T

    更新日期:2015-07-14 00:00:00

  • The importance of simulated lung fluid (SLF) extractions for a more relevant evaluation of the oxidative potential of particulate matter.

    abstract::Particulate matter (PM) induces oxidative stress in vivo, leading to adverse health effects. Oxidative potential (OP) of PM is increasingly studied as a relevant metric for health impact (instead of PM mass concentration) as much of the ambient particle mass do not contribute to PM toxicity. Several assays have been d...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-11979-3

    authors: Calas A,Uzu G,Martins JMF,Voisin D,Spadini L,Lacroix T,Jaffrezo JL

    更新日期:2017-09-14 00:00:00

  • Antimicrobial peptide-loaded gold nanoparticle-DNA aptamer conjugates as highly effective antibacterial therapeutics against Vibrio vulnificus.

    abstract::Vibrio vulnificus causes fatal infections in humans, and antibiotics are commonly used in treatment regimens against V. vulnificus infection. However, the therapeutic effects of antibiotics are limited by multidrug resistance. In this study, we demonstrated that an antimicrobial peptide (AMP), HPA3PHis, loaded onto a ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14127-z

    authors: Lee B,Park J,Ryu M,Kim S,Joo M,Yeom JH,Kim S,Park Y,Lee K,Bae J

    更新日期:2017-10-19 00:00:00

  • In vitro and in vivo investigation of osteogenic properties of self-contained phosphate-releasing injectable purine-crosslinked chitosan-hydroxyapatite constructs.

    abstract::Bone fracture repair is a multifaceted, coordinated physiological process that requires new bone formation and resorption, eventually returning the fractured bone to its original state. Currently, a variety of different approaches are pursued to accelerate the repair of defective bones, which include the use of 'gold ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67886-7

    authors: Jahan K,Manickam G,Tabrizian M,Murshed M

    更新日期:2020-07-14 00:00:00

  • Carbon: nitrogen stoichiometry following afforestation: a global synthesis.

    abstract::Though carbon (C): nitrogen (N) stoichiometry has been widely studied in terrestrial ecosystems, little is known about its variation following afforestation. By synthesizing the results of 53 studies, we examined temporal and spatial variation in C: N ratios and in N-C scaling relationships of both the organic and the...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19117

    authors: Xu X,Li D,Cheng X,Ruan H,Luo Y

    更新日期:2016-01-08 00:00:00

  • The KDEL trafficking receptor exploits pH to tune the strength of an unusual short hydrogen bond.

    abstract::The endoplasmic reticulum (ER) is the main site of protein synthesis in eukaryotic cells and requires a high concentration of luminal chaperones to function. During protein synthesis, ER luminal chaperones are swept along the secretory pathway and must be retrieved to maintain cell viability. ER protein retrieval is a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-73906-3

    authors: Wu Z,Newstead S,Biggin PC

    更新日期:2020-10-09 00:00:00

  • Evaluation of an antibody-PNA conjugate as a clearing agent for antibody-based PNA-mediated radionuclide pretargeting.

    abstract::Radionuclide molecular imaging of cancer-specific targets is a promising method to identify patients for targeted antibody therapy. Radiolabeled full-length antibodies however suffer from slow clearance, resulting in high background radiation. To overcome this problem, a pretargeting system based on complementary pept...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77523-y

    authors: Myrhammar A,Vorobyeva A,Westerlund K,Yoneoka S,Orlova A,Tsukahara T,Tolmachev V,Karlström AE,Altai M

    更新日期:2020-11-27 00:00:00

  • Epigenetic biomarker to support classification into pluripotent and non-pluripotent cells.

    abstract::Quality control of human induced pluripotent stem cells (iPSCs) can be performed by several methods. These methods are usually relatively labor-intensive, difficult to standardize, or they do not facilitate reliable quantification. Here, we describe a biomarker to distinguish between pluripotent and non-pluripotent ce...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08973

    authors: Lenz M,Goetzke R,Schenk A,Schubert C,Veeck J,Hemeda H,Koschmieder S,Zenke M,Schuppert A,Wagner W

    更新日期:2015-03-10 00:00:00

  • Green gravel: a novel restoration tool to combat kelp forest decline.

    abstract::Kelp forests are in decline globally and large-scale intervention could be required to halt the loss of these valuable ecosystems. To date kelp forest restoration has had limited success and been expensive and unable to address the increasing scale of ecosystem deterioration. Here we developed and tested a new approac...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60553-x

    authors: Fredriksen S,Filbee-Dexter K,Norderhaug KM,Steen H,Bodvin T,Coleman MA,Moy F,Wernberg T

    更新日期:2020-03-04 00:00:00

  • Mannan-modified adenovirus targeting TERT and VEGFR-2: A universal tumour vaccine.

    abstract::Antigen-presenting cells including dendritic cells (DCs) express mannan receptors (MR) on their surface, which can be exploited in cancer therapy by designing immune-stimulatory viruses coated with mannan-modified capsids that then bind to DCs and initiate a potent immune response. Although the combination of anti-ang...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11275

    authors: Wang Y,Zhang J,Wu Y,Ding ZY,Luo XM,Liu J,Zhong WN,Deng GH,Xia XY,Deng YT,Wei YQ,Jiang Y

    更新日期:2015-06-18 00:00:00

  • Inter-cluster distance dependence of electrical conduction in nanocluster assembled films of silver: a new paradigm for design of nanostructures.

    abstract::The transport properties of films assembled from metal nanoclusters can be significantly different from the metals in their bulk or thin film forms due to quantum confinement effects and several competing energy and length scales. For a film composed of metal nanoclusters as its building blocks, the cluster size and t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07685

    authors: Bansal C,Praveen SG,Kumaran JT,Chatterjee A

    更新日期:2015-01-08 00:00:00

  • Organelle membrane derived patches: reshaping classical methods for new targets.

    abstract::Intracellular ion channels are involved in multiple signaling processes, including such crucial ones as regulation of cellular motility and fate. With 95% of the cellular membrane belonging to intracellular organelles, it is hard to overestimate the importance of intracellular ion channels. Multiple studies have been ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13968-y

    authors: Shapovalov G,Ritaine A,Bidaux G,Slomianny C,Borowiec AS,Gordienko D,Bultynck G,Skryma R,Prevarskaya N

    更新日期:2017-10-26 00:00:00

  • Giant moving vortex mass in thick magnetic nanodots.

    abstract::Magnetic vortex is one of the simplest topologically non-trivial textures in condensed matter physics. It is the ground state of submicron magnetic elements (dots) of different shapes: cylindrical, square etc. So far, the vast majority of the vortex dynamics studies were focused on thin dots with thickness 5-50 nm and...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13881

    authors: Guslienko KY,Kakazei GN,Ding J,Liu XM,Adeyeye AO

    更新日期:2015-09-10 00:00:00

  • Crystal structure of CobK reveals strand-swapping between Rossmann-fold domains and molecular basis of the reduced precorrin product trap.

    abstract::CobK catalyzes the essential reduction of the precorrin ring in the cobalamin biosynthetic pathway. The crystal structure of CobK reveals that the enzyme, despite not having the signature sequence, comprises two Rossmann fold domains which bind coenzyme and substrate respectively. The two parallel β-sheets have swappe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16943

    authors: Gu S,Sushko O,Deery E,Warren MJ,Pickersgill RW

    更新日期:2015-11-30 00:00:00

  • Rattlesnakes are extremely fast and variable when striking at kangaroo rats in nature: Three-dimensional high-speed kinematics at night.

    abstract::Predation plays a central role in the lives of most organisms. Predators must find and subdue prey to survive and reproduce, whereas prey must avoid predators to do the same. The resultant antagonistic coevolution often leads to extreme adaptations in both parties. Few examples capture the imagination like a rapid str...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40412

    authors: Higham TE,Clark RW,Collins CE,Whitford MD,Freymiller GA

    更新日期:2017-01-13 00:00:00

  • Overlapping motifs on the herpes viral proteins ICP27 and ORF57 mediate interactions with the mRNA export adaptors ALYREF and UIF.

    abstract::The TREX complex mediates the passage of bulk cellular mRNA export to the nuclear export factor TAP/NXF1 via the export adaptors ALYREF or UIF, which appear to act in a redundant manner. TREX complex recruitment to nascent RNA is coupled with 5' capping, splicing and polyadenylation. Therefore to facilitate expression...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33379-x

    authors: Tunnicliffe RB,Tian X,Storer J,Sandri-Goldin RM,Golovanov AP

    更新日期:2018-10-09 00:00:00

  • NMR spectroscopy for thin films by magnetic resonance force microscopy.

    abstract::Nuclear magnetic resonance (NMR) is a fundamental research tool that is widely used in many fields. Despite its powerful applications, unfortunately the low sensitivity of conventional NMR makes it difficult to study thin film or nano-sized samples. In this work, we report the first NMR spectrum obtained from general ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03189

    authors: Won S,Saun SB,Lee S,Lee S,Kim K,Han Y

    更新日期:2013-11-12 00:00:00

  • Validation of the Drug Abuse Screening Test (DAST-10): A study on illicit drug use among Chinese pregnant women.

    abstract::We assessed the Chinese version of the Drug Abuse Screening Test (DAST-10) for identifying illicit drug use during pregnancy among Chinese population. Chinese pregnant women attending their first antenatal visit or their first unbooked visit to the maternity ward were recruited during a 4-month study period in 2011. T...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11420

    authors: Lam LP,Leung WC,Ip P,Chow CB,Chan MF,Ng JW,Sing C,Lam YH,Mak WL,Chow KM,Chin RK

    更新日期:2015-06-19 00:00:00

  • Transcriptomics in cancer revealed by Positron Emission Tomography radiomics.

    abstract::Metabolic images from Positron Emission Tomography (PET) are used routinely for diagnosis, follow-up or treatment planning purposes of cancer patients. In this study we aimed at determining if radiomic features extracted from 18F-Fluoro Deoxy Glucose (FDG) PET images could mirror tumor transcriptomics. In this study w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62414-z

    authors: Tixier F,Cheze-le-Rest C,Schick U,Simon B,Dufour X,Key S,Pradier O,Aubry M,Hatt M,Corcos L,Visvikis D

    更新日期:2020-03-27 00:00:00

  • Mycobacterium marinum infections in Denmark from 2004 to 2017: A retrospective study of incidence, patient characteristics, treatment regimens and outcome.

    abstract::Mycobacterium marinum (M. marinum) is a slowly growing nontuberculous mycobacterium. The incidence of M. marinum infections in Denmark is unknown. We conducted a retrospective nationwide study including all culture confirmed cases of M. marinum from 2004 to 2017 in Denmark. All available medical records were reviewed....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-24702-7

    authors: Holden IK,Kehrer M,Andersen AB,Wejse C,Svensson E,Johansen IS

    更新日期:2018-04-30 00:00:00

  • Co-production of DHA and squalene by thraustochytrid from forest biomass.

    abstract::Omega-3 fatty acids, and specifically docosahexaenoic acid (DHA), are important and essential nutrients for human health. Thraustochytrids are recognised as commercial strains for nutraceuticals production, they are group of marine oleaginous microorganisms capable of co-synthesis of DHA and other valuable carotenoids...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58728-7

    authors: Patel A,Liefeldt S,Rova U,Christakopoulos P,Matsakas L

    更新日期:2020-02-06 00:00:00

  • PETModule: a motif module based approach for enhancer target gene prediction.

    abstract::The identification of enhancer-target gene (ETG) pairs is vital for the understanding of gene transcriptional regulation. Experimental approaches such as Hi-C have generated valuable resources of ETG pairs. Several computational methods have also been developed to successfully predict ETG interactions. Despite these p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30043

    authors: Zhao C,Li X,Hu H

    更新日期:2016-07-20 00:00:00