Detection of timescales in evolving complex systems.

Abstract:

:Most complex systems are intrinsically dynamic in nature. The evolution of a dynamic complex system is typically represented as a sequence of snapshots, where each snapshot describes the configuration of the system at a particular instant of time. This is often done by using constant intervals but a better approach would be to define dynamic intervals that match the evolution of the system's configuration. To this end, we propose a method that aims at detecting evolutionary changes in the configuration of a complex system, and generates intervals accordingly. We show that evolutionary timescales can be identified by looking for peaks in the similarity between the sets of events on consecutive time intervals of data. Tests on simple toy models reveal that the technique is able to detect evolutionary timescales of time-varying data both when the evolution is smooth as well as when it changes sharply. This is further corroborated by analyses of several real datasets. Our method is scalable to extremely large datasets and is computationally efficient. This allows a quick, parameter-free detection of multiple timescales in the evolution of a complex system.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Darst RK,Granell C,Arenas A,Gómez S,Saramäki J,Fortunato S

doi

10.1038/srep39713

subject

Has Abstract

pub_date

2016-12-22 00:00:00

pages

39713

issn

2045-2322

pii

srep39713

journal_volume

6

pub_type

杂志文章
  • Numerical modelling of the effects of cold atmospheric plasma on mitochondrial redox homeostasis and energy metabolism.

    abstract::A biochemical reaction model clarifies for the first time how cold atmospheric plasmas (CAPs) affect mitochondrial redox homeostasis and energy metabolism. Fundamental mitochondrial functions in pyruvic acid oxidation, the tricarboxylic acid (TCA) cycle and oxidative phosphorylation involving the respiratory chain (RC...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53219-w

    authors: Murakami T

    更新日期:2019-11-20 00:00:00

  • Biomechanical investigation of extragraft bone formation influences on the operated motion segment after anterior cervical spinal discectomy and fusion.

    abstract::Although the clinical importance of extragraft bone formation (ExGBF) and bridging (ExGBB) has been reported, few studies have investigated the biomechanical influences of ExGBF on the motion segment. In this study, ExGBF was simulated at the C5-C6 motion segment after anterior cervical discectomy and fusion using a d...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54785-9

    authors: Park WM,Jin YJ

    更新日期:2019-12-11 00:00:00

  • Maternally expressed NLRP2 links the subcortical maternal complex (SCMC) to fertility, embryogenesis and epigenetic reprogramming.

    abstract::Mammalian parental genomes contribute differently to early embryonic development. Before activation of the zygotic genome, the maternal genome provides all transcripts and proteins required for the transition from a highly specialized oocyte to a pluripotent embryo. Depletion of these maternally-encoded transcripts fr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44667

    authors: Mahadevan S,Sathappan V,Utama B,Lorenzo I,Kaskar K,Van den Veyver IB

    更新日期:2017-03-20 00:00:00

  • Characteristics, injuries, and clinical outcomes of geriatric trauma patients in Japan: an analysis of the nationwide trauma registry database.

    abstract::Geriatric trauma is a major socio-economic problem, especially among the aging Japanese society. Geriatric people are more vulnerable to trauma than younger people; thus, their outcomes are often severe. This study evaluates the characteristics of geriatric trauma divided by age in the Japanese population. We evaluate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76149-4

    authors: Miyoshi Y,Kondo Y,Hirano Y,Ishihara T,Sueyoshi K,Okamoto K,Tanaka H

    更新日期:2020-11-05 00:00:00

  • A comparison of baleen whale density estimates derived from overlapping satellite imagery and a shipborne survey.

    abstract::As whales recover from commercial exploitation, they are increasing in abundance in habitats that they have been absent from for decades. However, studying the recovery and habitat use patterns of whales, particularly in remote and inaccessible regions, frequently poses logistical and economic challenges. Here we tria...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69887-y

    authors: Bamford CCG,Kelly N,Dalla Rosa L,Cade DE,Fretwell PT,Trathan PN,Cubaynes HC,Mesquita AFC,Gerrish L,Friedlaender AS,Jackson JA

    更新日期:2020-07-31 00:00:00

  • Hypothermic Oxygenated Machine Perfusion of Liver Grafts from Brain-Dead Donors.

    abstract::Hypothermic oxygenated machine perfusion (HOPE) was introduced in liver transplantation (LT) to mitigate ischemia-reperfusion injury. Available clinical data mainly concern LT with donors after circulatory-determined death, whereas data on brain-dead donors (DBD) are scarce. To assess the impact of end-ischemic HOPE i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45843-3

    authors: Patrono D,Surra A,Catalano G,Rizza G,Berchialla P,Martini S,Tandoi F,Lupo F,Mirabella S,Stratta C,Salizzoni M,Romagnoli R

    更新日期:2019-06-27 00:00:00

  • Tendons from kangaroo rats are exceptionally strong and tough.

    abstract::Tendons must be able to withstand the forces generated by muscles and not fail. Accordingly, a previous comparative analysis across species has shown that tendon strength (i.e., failure stress) increases for larger species. In addition, the elastic modulus increases proportionally to the strength, demonstrating that t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44671-9

    authors: Javidi M,McGowan CP,Schiele NR,Lin DC

    更新日期:2019-06-03 00:00:00

  • Effects of symmetry-breaking on electromagnetic backscattering.

    abstract::Systems with a discrete rotational symmetry [Formula: see text] where [Formula: see text] that also have electromagnetic duality symmetry exhibit zero backscattering. The impact of breaking one of the two symmetries on the emerging backscattering has not yet been systematically studied. Here, we investigate the effect...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80347-5

    authors: Abdelrahman MI,Slivina E,Rockstuhl C,Fernandez-Corbaton I

    更新日期:2021-01-18 00:00:00

  • Reproductive performance of gilthead seabream (Sparus aurata) broodstock showing different expression of fatty acyl desaturase 2 and fed two dietary fatty acid profiles.

    abstract::Previous studies have shown that it is possible to nutritionally program gilthead seabream offspring through fish oil (FO) replacement by vegetable oils (VO) in the broodstock diet, to improve their ability to grow fast when fed low fish meal (FM) and FO diets during grow-out phase. However, in those studies broodstoc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72166-5

    authors: Ferosekhan S,Xu H,Turkmen S,Gómez A,Afonso JM,Fontanillas R,Rosenlund G,Kaushik S,Izquierdo M

    更新日期:2020-09-23 00:00:00

  • An ultraviolet responsive hybrid solar cell based on titania/poly(3-hexylthiophene).

    abstract::Here we present an ultraviolet responsive inorganic-organic hybrid solar cell based on titania/poly(3-hexylthiophene) (TiO(2)/P3HT) heterojuction. In this solar cell, TiO(2) is an ultraviolet light absorber and electronic conductor, P3HT is a hole conductor, the light-to-electrical conversion is realized by the cooper...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01283

    authors: Wu J,Yue G,Xiao Y,Lin J,Huang M,Lan Z,Tang Q,Huang Y,Fan L,Yin S,Sato T

    更新日期:2013-01-01 00:00:00

  • Peaches Preceded Humans: Fossil Evidence from SW China.

    abstract::Peach (Prunus persica, Rosaceae) is an extremely popular tree fruit worldwide, with an annual production near 20 million tons. Peach is widely thought to have origins in China, but its evolutionary history is largely unknown. The oldest evidence for the peach has been Chinese archaeological records dating to 8000-7000...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16794

    authors: Su T,Wilf P,Huang Y,Zhang S,Zhou Z

    更新日期:2015-11-26 00:00:00

  • Ternary Organic Solar Cells Based on a Wide-Bandgap Polymer with Enhanced Power Conversion Efficiencies.

    abstract::A low-bandgap acceptor (ITIC) was added to a binary system composed of a wide-bandgap polymer (PBT-OTT) and an acceptor (PC71BM) to increase the light harvesting efficiency of the associated organic solar cells (OSCs). A ternary blend OSC with an acceptor ratio of PC71BM:ITIC = 8:2 was found to exhibit a power convers...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48306-x

    authors: Hwang H,Sin DH,Park C,Cho K

    更新日期:2019-08-19 00:00:00

  • Rapid Characterization of Local Shape Memory Properties through Indentation.

    abstract:ABSTARCT:Shape memory alloys (SMAs) have the ability to show large recoverable shape changes upon temperature, stress or magnetic field cycling. Their shape memory, material and magnetic properties (e.g. transformation temperatures, strain, saturation magnetization and strength) determine their prospects for applicatio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13434-9

    authors: Li P,Karaca HE,Cheng YT

    更新日期:2017-11-01 00:00:00

  • Architecture of the Synaptophysin/Synaptobrevin Complex: Structural Evidence for an Entropic Clustering Function at the Synapse.

    abstract::We have purified the mammalian synaptophysin/synaptobrevin (SYP/VAMP2) complex to homogeneity in the presence of cholesterol and determined the 3D EM structure by single particle reconstruction. The structure reveals that SYP and VAMP2 assemble into a hexameric ring wherein 6 SYP molecules bind 6 VAMP2 dimers. Using t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13659

    authors: Adams DJ,Arthur CP,Stowell MH

    更新日期:2015-09-03 00:00:00

  • Preclinical dosimetry models and the prediction of clinical doses of novel positron emission tomography radiotracers.

    abstract::Dosimetry models using preclinical positron emission tomography (PET) data are commonly employed to predict the clinical radiological safety of novel radiotracers. However, unbiased clinical safety profiling remains difficult during the translational exercise from preclinical research to first-in-human studies for nov...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72830-w

    authors: Garrow AA,Andrews JPM,Gonzalez ZN,Corral CA,Portal C,Morgan TEF,Walton T,Wilson I,Newby DE,Lucatelli C,Tavares AAS

    更新日期:2020-09-29 00:00:00

  • Microstructure analysis and mechanical properties of phosphorus-reinforced ZCuPb20Sn5 alloy.

    abstract::An investigation was carried out to assess the effect of the P content on the microstructure and mechanical properties of ZCuPb20Sn5 alloy. Alloys of various compositions, (0.05, 0.1, 0.2, 0.3, 0.5% wt.% P) were melted in a melting furnace under 1200 °C and cast into metal mould, the hardness, strength and elongation ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49441-1

    authors: Ren XY,Zhang X,Hong X,Ren J

    更新日期:2019-09-16 00:00:00

  • A novel immune prognostic index for stratification of high-risk patients with early breast cancer.

    abstract::The prognostic value of current multigene assays for breast cancer is limited to hormone receptor-positive, human epidermal growth factor receptor 2-negative early breast cancer. Despite the prognostic significance of immune response-related genes in breast cancer, immune gene signatures have not been incorporated int...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80274-5

    authors: Lee H,Kwon MJ,Koo BM,Park HG,Han J,Shin YK

    更新日期:2021-01-08 00:00:00

  • Formalin-fixed paraffin-embedded renal biopsy tissues: an underexploited biospecimen resource for gene expression profiling in IgA nephropathy.

    abstract::Primary IgA nephropathy (IgAN) diagnosis is based on IgA-dominant glomerular deposits and histological scoring is done on formalin-fixed paraffin embedded tissue (FFPE) sections using the Oxford classification. Our aim was to use this underexploited resource to extract RNA and identify genes that characterize active (...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72026-2

    authors: Cox SN,Chiurlia S,Divella C,Rossini M,Serino G,Bonomini M,Sirolli V,Aiello FB,Zaza G,Squarzoni I,Gangemi C,Stangou M,Papagianni A,Haas M,Schena FP

    更新日期:2020-09-16 00:00:00

  • Effects of physical exercise on macular vessel density and choroidal thickness in children.

    abstract::We used swept-source (SS) optical coherence tomography (OCT) and OCT angiography (OCTA) to investigate the effects of moderate physical exercise on retinal and choroidal vessel densities (VDs) and thicknesses in children. One eye in each of 40 myopic children (mean age, 11.70 years) and 18 emmetropic children (mean ag...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-81770-y

    authors: Li S,Pan Y,Xu J,Li X,Spiegel DP,Bao J,Chen H

    更新日期:2021-01-21 00:00:00

  • Natural Erosion of Sandstone as Shape Optimisation.

    abstract::Natural arches, pillars and other exotic sandstone formations have always been attracting attention for their unusual shapes and amazing mechanical balance that leave a strong impression of intelligent design rather than the result of a stochastic process. It has been recently demonstrated that these shapes could have...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-17777-1

    authors: Ostanin I,Safonov A,Oseledets I

    更新日期:2017-12-11 00:00:00

  • Practical quantum private query of blocks based on unbalanced-state Bennett-Brassard-1984 quantum-key-distribution protocol.

    abstract::Until now, the only kind of practical quantum private query (QPQ), quantum-key-distribution (QKD)-based QPQ, focuses on the retrieval of a single bit. In fact, meaningful message is generally composed of multiple adjacent bits (i.e., a multi-bit block). To obtain a message a1a2···al from database, the user Alice has t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07537

    authors: Wei CY,Gao F,Wen QY,Wang TY

    更新日期:2014-12-18 00:00:00

  • Differential photosynthetic and morphological adaptations to low light affect depth distribution of two submersed macrophytes in lakes.

    abstract::To evaluate the relative importance of photosynthetic versus morphological adaptations of submersed macrophytes to low light intensity in lakes, rapid light curves (RLCs), morphological parameters, relative growth rate (RGR), clonal reproduction and abundance of two submersed macrophytes (Potamogeton maackianus and Va...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep34028

    authors: Chen J,Cao T,Zhang X,Xi Y,Ni L,Jeppesen E

    更新日期:2016-10-03 00:00:00

  • Transcriptome profiling shows gene regulation patterns in ginsenoside pathway in response to methyl jasmonate in Panax Quinquefolium adventitious root.

    abstract::Here, we combine elicitors and transcriptomics to investigate the inducible biosynthesis of the ginsenoside from the Panax quinquefolium. Treatment of P. quinquefolium adventitious root with methyl jasmonate (MJ) results in an increase in ginsenoside content (43.66 mg/g compared to 8.32 mg/g in control group). Therefo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37263

    authors: Wang J,Li J,Li J,Liu S,Wu X,Li J,Gao W

    更新日期:2016-11-23 00:00:00

  • Magnetic thin-film insulator with ultra-low spin wave damping for coherent nanomagnonics.

    abstract::Wave control in the solid state has opened new avenues in modern information technology. Surface-acoustic-wave-based devices are found as mass market products in 100 millions of cellular phones. Spin waves (magnons) would offer a boost in today's data handling and security implementations, i.e., image processing and s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06848

    authors: Yu H,Kelly Od,Cros V,Bernard R,Bortolotti P,Anane A,Brandl F,Huber R,Stasinopoulos I,Grundler D

    更新日期:2014-10-30 00:00:00

  • The neurophysiological architecture of semantic dementia: spectral dynamic causal modelling of a neurodegenerative proteinopathy.

    abstract::The selective destruction of large-scale brain networks by pathogenic protein spread is a ubiquitous theme in neurodegenerative disease. Characterising the circuit architecture of these diseases could illuminate both their pathophysiology and the computational architecture of the cognitive processes they target. Howev...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72847-1

    authors: Benhamou E,Marshall CR,Russell LL,Hardy CJD,Bond RL,Sivasathiaseelan H,Greaves CV,Friston KJ,Rohrer JD,Warren JD,Razi A

    更新日期:2020-10-01 00:00:00

  • Nano-plasmonic Bundt Optenna for broadband polarization-insensitive and enhanced infrared detection.

    abstract::Infrared detection devices are becoming miniature with micro or nano-scale size. The advantages of downsizing come on the expense of insufficient collection of infrared radiation. Therefore, utilizing nano-plasmonic optical antennas becomes mandatory. However, it is desirable to develop antennas with broad bandwidth, ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48648-6

    authors: Awad E

    更新日期:2019-08-21 00:00:00

  • Effect of nitrogen application rate on yield, forage quality, and animal performance in a tropical pasture.

    abstract::A three-year-long field experiment was conducted in a continuous grazing system with a variable stocking rate to evaluate effects of increasing nitrogen levels in Marandu grass (Brachiaria brizantha Hochst ex A. Rich Stapf "marandu") on herbage mass, forage accumulation rate (FAR), forage quality, stocking rate (SR), ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44138-x

    authors: Delevatti LM,Cardoso AS,Barbero RP,Leite RG,Romanzini EP,Ruggieri AC,Reis RA

    更新日期:2019-05-20 00:00:00

  • Mechanistic insight into the functional transition of the enzyme guanylate kinase induced by a single mutation.

    abstract::Dramatic functional changes of enzyme usually require scores of alterations in amino acid sequence. However, in the case of guanylate kinase (GK), the functional novelty is induced by a single (S→P) mutation, leading to the functional transition of the enzyme from a phosphoryl transfer kinase into a phosphorprotein in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08405

    authors: Zhang Y,Niu H,Li Y,Chu H,Shen H,Zhang D,Li G

    更新日期:2015-02-12 00:00:00

  • Effects of elevational range shift on the morphology and physiology of a carabid beetle invading the sub-Antarctic Kerguelen Islands.

    abstract::Climatic changes can induce geographic expansion and altitudinal shifts in the distribution of invasive species by offering more thermally suitable habitats. At the remote sub-Antarctic Kerguelen Islands, the predatory insect Merizodus soledadinus (Coleoptera: Carabidae), introduced in 1913, rapidly invaded coastal ha...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-57868-0

    authors: Ouisse T,Day E,Laville L,Hendrickx F,Convey P,Renault D

    更新日期:2020-01-27 00:00:00

  • Caveolae-mediated albumin transcytosis is enhanced in dengue-infected human endothelial cells: A model of vascular leakage in dengue hemorrhagic fever.

    abstract::Vascular leakage is a life-threatening complication of dengue virus (DENV) infection. Previously, association between "paracellular" endothelial hyperpermeability and plasma leakage had been extensively investigated. However, whether "transcellular" endothelial leakage is involved in dengue hemorrhagic fever (DHF) and...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep31855

    authors: Chanthick C,Kanlaya R,Kiatbumrung R,Pattanakitsakul SN,Thongboonkerd V

    更新日期:2016-08-22 00:00:00