Elimination of HIV-1 Genomes from Human T-lymphoid Cells by CRISPR/Cas9 Gene Editing.

Abstract:

:We employed an RNA-guided CRISPR/Cas9 DNA editing system to precisely remove the entire HIV-1 genome spanning between 5' and 3' LTRs of integrated HIV-1 proviral DNA copies from latently infected human CD4+ T-cells. Comprehensive assessment of whole-genome sequencing of HIV-1 eradicated cells ruled out any off-target effects by our CRISPR/Cas9 technology that might compromise the integrity of the host genome and further showed no effect on several cell health indices including viability, cell cycle and apoptosis. Persistent co-expression of Cas9 and the specific targeting guide RNAs in HIV-1-eradicated T-cells protected them against new infection by HIV-1. Lentivirus-delivered CRISPR/Cas9 significantly diminished HIV-1 replication in infected primary CD4+ T-cell cultures and drastically reduced viral load in ex vivo culture of CD4+ T-cells obtained from HIV-1 infected patients. Thus, gene editing using CRISPR/Cas9 may provide a new therapeutic path for eliminating HIV-1 DNA from CD4+ T-cells and potentially serve as a novel and effective platform toward curing AIDS.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Kaminski R,Chen Y,Fischer T,Tedaldi E,Napoli A,Zhang Y,Karn J,Hu W,Khalili K

doi

10.1038/srep22555

subject

Has Abstract

pub_date

2016-03-04 00:00:00

pages

22555

issn

2045-2322

pii

srep22555

journal_volume

6

pub_type

杂志文章
  • Gallic acid improves cardiac dysfunction and fibrosis in pressure overload-induced heart failure.

    abstract::Gallic acid is a trihydroxybenzoic acid found in tea leaves and some plants. Here, we report the effect of gallic acid on cardiac dysfunction and fibrosis in a mouse model of pressure overload-induced heart failure and in primary rat cardiac fibroblasts, and compare the effects of gallic acid with those of drugs used ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27599-4

    authors: Jin L,Sun S,Ryu Y,Piao ZH,Liu B,Choi SY,Kim GR,Kim HS,Kee HJ,Jeong MH

    更新日期:2018-06-18 00:00:00

  • Computational design of host transcription-factors sets whose misregulation mimics the transcriptomic effect of viral infections.

    abstract::The molecular mechanisms underlying viral pathogenesis are yet poorly understood owed to the large number of factors involved and the complexity of their interactions. Could we identify a minimal set of host transcription factors (TF) whose misregulation would result in the transcriptional profile characteristic of in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01006

    authors: Carrera J,Elena SF

    更新日期:2012-01-01 00:00:00

  • Transcriptome sequencing and differential gene expression analysis of the schistosome-transmitting snail Oncomelania hupensis inhabiting hilly and marshland regions.

    abstract::The freshwater snail Oncomelania hupensis is the unique intermediate host of the blood fluke Schistosoma japonicum, which is the major cause of schistosomiasis. The snail inhabits two contrasting environments: the hilly and marshland regions. The hilly snails are smaller in size and have the typical smooth shell, wher...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16084-z

    authors: Zhao JS,Wang AY,Zhao HB,Chen YH

    更新日期:2017-11-17 00:00:00

  • Hepatitis B virus X protein is capable of down-regulating protein level of host antiviral protein APOBEC3G.

    abstract::The apolipoprotein B mRNA editing catalytic polypeptide-like (APOBEC) family proteins bind RNA and single-stranded DNA, and create C-to-U base modifications through cytidine deaminase activity. APOBEC3G restricts human immunodeficiency virus 1 (HIV-1) infection by creating hypermutations in proviral DNA, while HIV-1-e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40783

    authors: Chen R,Zhao X,Wang Y,Xie Y,Liu J

    更新日期:2017-01-18 00:00:00

  • Feasibility of a circulation model for the assessment of endovascular recanalization procedures and periprocedural thromboembolism in-vitro.

    abstract::Aim of this study was to establish a simple and highly reproducible physiological circulation model to investigate endovascular device performance. The developed circulation model included a pneumatically driven pulsatile pump to generate a flow rate of 2.7 L/min at 70 beats per minute. Sections from the superficial f...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53607-2

    authors: Rusch R,Trentmann J,Hummitzsch L,Rusch M,Aludin S,Haneya A,Albrecht M,Schäfer JP,Puehler T,Cremer J,Berndt R

    更新日期:2019-11-22 00:00:00

  • Reference genes for quantitative real-time PCR analysis in symbiont Entomomyces delphacidicola of Nilaparvata lugens (Stål).

    abstract::Nilaparvata lugens (Stål) (Hemiptera: Delphacidae) is a major rice pest that harbors an endosymbiont ascomycete fungus, Entomomyces delphacidicola str. NLU (also known as yeast-like symbiont, YLS). Driving by demand of novel population management tactics (e.g. RNAi), the importance of YLS has been studied and revealed...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep42206

    authors: Wan PJ,Tang YH,Yuan SY,He JC,Wang WX,Lai FX,Fu Q

    更新日期:2017-02-13 00:00:00

  • Disparate subcellular location of putative sortase substrates in Clostridium difficile.

    abstract::Clostridium difficile is a gastrointestinal pathogen but how the bacterium colonises this niche is still little understood. Sortase enzymes covalently attach specific bacterial proteins to the peptidoglycan cell wall and are often involved in colonisation by pathogens. Here we show C. difficile proteins CD2537 and CD3...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08322-1

    authors: Peltier J,Shaw HA,Wren BW,Fairweather NF

    更新日期:2017-08-23 00:00:00

  • A Strategy to enhance Eu3+ emission from LiYF4:Eu nanophosphors and green-to-orange multicolor tunable, transparent nanophosphor-polymer composites.

    abstract::LiYF4:Eu nanophosphors with a single tetragonal phase are synthesized, and various strategies to enhance the Eu(3+) emission from the nanophosphors are investigated. The optimized Eu(3+) concentration is 35 mol%, and the red emission peaks due to the (5)D0 →(7)FJ (J = 1 and 2) transitions of Eu(3+) ions are further en...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07866

    authors: Kim SY,Won YH,Jang HS

    更新日期:2015-01-19 00:00:00

  • The application of a biostimulant based on tannins affects root architecture and improves tolerance to salinity in tomato plants.

    abstract::Roots have important roles for plants to withstand adverse environmental conditions, including salt stress. Biostimulant application was shown to enhance plant resilience towards abiotic stresses. Here, we studied the effect of a tannin-based biostimulant on tomato (Solanum lycopersicum L.) grown under salt stress con...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79770-5

    authors: Campobenedetto C,Mannino G,Beekwilder J,Contartese V,Karlova R,Bertea CM

    更新日期:2021-01-11 00:00:00

  • Mapping plasmonic near-field profiles and interferences by surface-enhanced Raman scattering.

    abstract::Mapping near-field profiles and dynamics of surface plasmon polaritons is crucial for understanding their fundamental optical properties and designing miniaturized photonic devices. This requires a spatial resolution on the sub-wavelength scale because the effective polariton wavelength is shorter than free-space exci...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03064

    authors: Du L,Lei DY,Yuan G,Fang H,Zhang X,Wang Q,Tang D,Min C,Maier SA,Yuan X

    更新日期:2013-10-29 00:00:00

  • Genomic signatures of local adaptation reveal source-sink dynamics in a high gene flow fish species.

    abstract::Understanding source-sink dynamics is important for conservation management, particularly when climatic events alter species' distributions. Following a 2011 'marine heatwave' in Western Australia, we observed high recruitment of the endemic fisheries target species Choerodon rubescens, towards the cooler (southern) e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09224-y

    authors: Cure K,Thomas L,Hobbs JA,Fairclough DV,Kennington WJ

    更新日期:2017-08-17 00:00:00

  • Association between systemic oxidative stress and visual field damage in open-angle glaucoma.

    abstract::Local and systemic oxidative stress in intraocular pressure (IOP) elevation and optic nerve damage may be involved in the pathogenesis of glaucoma. We reported previously that a lower level of systemic antioxidative capacity is associated with IOP elevation in open-angle glaucoma (OAG). We assessed the correlation bet...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25792

    authors: Tanito M,Kaidzu S,Takai Y,Ohira A

    更新日期:2016-05-11 00:00:00

  • Effect of grain structure on Charpy impact behavior of copper.

    abstract::Nanostructured (NS) and ultrafine-grained (UFG) materials have high strength and relatively low ductility. Their toughness has not been comprehensively investigated. Here we report the Charpy impact behavior and the corresponding microstructural evolutions in UFG Cu with equi-axed and elongated grains which were prepa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44783

    authors: Liang N,Zhao Y,Wang J,Zhu Y

    更新日期:2017-03-17 00:00:00

  • Effective gene expression in the rat dorsal root ganglia with a non-viral vector delivered via spinal nerve injection.

    abstract::Delivering gene constructs into the dorsal root ganglia (DRG) is a powerful but challenging therapeutic strategy for sensory disorders affecting the DRG and their peripheral processes. The current delivery methods of direct intra-DRG injection and intrathecal injection have several disadvantages, including potential i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35612

    authors: Chang MF,Hsieh JH,Chiang H,Kan HW,Huang CM,Chellis L,Lin BS,Miaw SC,Pan CL,Chao CC,Hsieh ST

    更新日期:2016-10-17 00:00:00

  • Determinants of Quantitative Optical Coherence Tomography Angiography Metrics in Patients with Diabetes.

    abstract::Early microvascular damage in diabetes (e.g. capillary nonperfusion and ischemia) can now be assessed and quantified with optical coherence tomography-angiography (OCT-A). The morphology of vascular tissue is indeed affected by different factors; however, there is a paucity of data examining whether OCT-A metrics are ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02767-0

    authors: Tang FY,Ng DS,Lam A,Luk F,Wong R,Chan C,Mohamed S,Fong A,Lok J,Tso T,Lai F,Brelen M,Wong TY,Tham CC,Cheung CY

    更新日期:2017-05-31 00:00:00

  • Publisher Correction: Fast, sensitive method for trisaccharide biomarker detection in mucopolysaccharidosis type 1.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-018-23332-3

    authors: Makino E,Klodnitsky H,Leonard J,Lillie J,Lund TC,Marshall J,Nietupski J,Orchard PJ,Miller WP,Phaneuf C,Tietz D,Varban ML,Donovan M,Belenki A

    更新日期:2018-03-19 00:00:00

  • Topological insulator bismuth selenide as a theranostic platform for simultaneous cancer imaging and therapy.

    abstract::Employing theranostic nanoparticles, which combine both therapeutic and diagnostic capabilities in one dose, has promise to propel the biomedical field toward personalized medicine. Here we investigate the theranostic properties of topological insulator bismuth selenide (Bi2Se3) in in vivo and in vitro system for the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01998

    authors: Li J,Jiang F,Yang B,Song XR,Liu Y,Yang HH,Cao DR,Shi WR,Chen GN

    更新日期:2013-01-01 00:00:00

  • Anatomy of the external branch of the superior laryngeal nerve in Asian population.

    abstract::Injury to the external branch of the superior laryngeal nerve (eSLN) can cause a hoarse or weak voice with dysergia of the cricothyroid. The present study provided the topographic information of the eSLN in the Asian and verified anatomical validity of the landmarks previously recruited to localize the eSLN. Thirty sp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15070-9

    authors: Cha YH,Moon SY,Jehoon O,Tansatit T,Yang HM

    更新日期:2017-11-02 00:00:00

  • Driven progressive evolution of genome sequence complexity in Cyanobacteria.

    abstract::Progressive evolution, or the tendency towards increasing complexity, is a controversial issue in biology, which resolution entails a proper measurement of complexity. Genomes are the best entities to address this challenge, as they encode the historical information of a species' biotic and environmental interactions....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76014-4

    authors: Moya A,Oliver JL,Verdú M,Delaye L,Arnau V,Bernaola-Galván P,de la Fuente R,Díaz W,Gómez-Martín C,González FM,Latorre A,Lebrón R,Román-Roldán R

    更新日期:2020-11-04 00:00:00

  • Analysis of rice nuclear-localized seed-expressed proteins and their database (RSNP-DB).

    abstract::Nuclear proteins are primarily regulatory factors governing gene expression. Multiple factors determine the localization of a protein in the nucleus. An upright identification of nuclear proteins is way far from accuracy. We have attempted to combine information from subcellular prediction tools, experimental evidence...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70713-8

    authors: Deveshwar P,Sharma S,Prusty A,Sinha N,Zargar SM,Karwal D,Parashar V,Singh S,Tyagi AK

    更新日期:2020-09-15 00:00:00

  • A Fully Automated System Using A Convolutional Neural Network to Predict Renal Allograft Rejection: Extra-validation with Giga-pixel Immunostained Slides.

    abstract::Pathologic diagnoses mainly depend on visual scoring by pathologists, a process that can be time-consuming, laborious, and susceptible to inter- and/or intra-observer variations. This study proposes a novel method to enhance pathologic scoring of renal allograft rejection. A fully automated system using a convolutiona...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-41479-5

    authors: Kim YG,Choi G,Go H,Cho Y,Lee H,Lee AR,Park B,Kim N

    更新日期:2019-03-26 00:00:00

  • Reactive saccade adaptation boosts orienting of visuospatial attention.

    abstract::Attention and saccadic eye movements are critical components of visual perception. Recent studies proposed the hypothesis of a tight coupling between saccadic adaptation (SA) and attention: SA increases the processing speed of unpredictable stimuli, while increased attentional load boosts SA. Moreover, their cortical ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70120-z

    authors: Nicolas J,Bidet-Caulet A,Pélisson D

    更新日期:2020-08-10 00:00:00

  • Multi-band MIM refractive index biosensor based on Ag-air grating with equivalent circuit and T-matrix methods in near-infrared region.

    abstract::In this paper, a multi-band metal-insulator-metal (MIM) perfect absorber with refractive index sensing capability has been investigated in near-infrared region. The proposed structure has been studied for biomedical applications such as detection of solution of glucose in water, diagnosis of different stages of malari...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63459-w

    authors: Nejat M,Nozhat N

    更新日期:2020-04-14 00:00:00

  • Chronic post-stroke aphasia severity is determined by fragmentation of residual white matter networks.

    abstract::Many stroke survivors with aphasia in the acute period experience spontaneous recovery within the first six months after the stroke. However, approximately 30-40% sustain permanent aphasia and the factors determining incomplete recovery are unclear. Suboptimal recovery may be influenced by disruption of areas seemingl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07607-9

    authors: Marebwa BK,Fridriksson J,Yourganov G,Feenaughty L,Rorden C,Bonilha L

    更新日期:2017-08-15 00:00:00

  • A functional investigation of the suppression of CpG and UpA dinucleotide frequencies in plant RNA virus genomes.

    abstract::Frequencies of CpG and UpA dinucleotides in most plant RNA virus genomes show degrees of suppression comparable to those of vertebrate RNA viruses. While pathways that target CpG and UpAs in HIV-1 and echovirus 7 genomes and restrict their replication have been partly characterised, whether an analogous process drives...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54853-0

    authors: Ibrahim A,Fros J,Bertran A,Sechan F,Odon V,Torrance L,Kormelink R,Simmonds P

    更新日期:2019-12-04 00:00:00

  • Interface engineering of graphene for universal applications as both anode and cathode in organic photovoltaics.

    abstract::The high transparency of graphene, together with its good electrical conductivity and mechanical robustness, enable its use as transparent electrodes in optoelectronic devices such as solar cells. While initial demonstrations of graphene-based organic photovoltaics (OPV) have been promising, realization of scalable te...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01581

    authors: Park H,Chang S,Smith M,Gradečak S,Kong J

    更新日期:2013-01-01 00:00:00

  • Geometry- and Length Scale-Dependent Deformation and Recovery on Micro- and Nanopatterned Shape Memory Polymer Surfaces.

    abstract::Micro- and nanoscale surface textures, when optimally designed, present a unique approach to improve surface functionalities. Coupling surface texture with shape memory polymers may generate reversibly tuneable surface properties. A shape memory polyetherurethane is used to prepare various surface textures including 2...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23686

    authors: Lee WL,Low HY

    更新日期:2016-03-30 00:00:00

  • Harvesting more grain zinc of wheat for human health.

    abstract::Increasing grain zinc (Zn) concentration of cereals for minimizing Zn malnutrition in two billion people represents an important global humanitarian challenge. Grain Zn in field-grown wheat at the global scale ranges from 20.4 to 30.5 mg kg-1, showing a solid gap to the biofortification target for human health (40 mg ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07484-2

    authors: Chen XP,Zhang YQ,Tong YP,Xue YF,Liu DY,Zhang W,Deng Y,Meng QF,Yue SC,Yan P,Cui ZL,Shi XJ,Guo SW,Sun YX,Ye YL,Wang ZH,Jia LL,Ma WQ,He MR,Zhang XY,Kou CL,Li YT,Tan DS,Cakmak I,Zhang FS,Zou CQ

    更新日期:2017-08-01 00:00:00

  • Author Correction: Signal quality of simultaneously recorded endovascular, subdural and epidural signals are comparable.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-018-36257-8

    authors: John SE,Opie NL,Wong YT,Rind GS,Ronayne SM,Gerboni G,Bauquier SH,O'Brien TJ,May CN,Grayden DB,Oxley TJ

    更新日期:2018-11-27 00:00:00

  • A Multi-scale Biophysical Approach to Develop Structure-Property Relationships in Oral Biofilms.

    abstract::Over the last 5-10 years, optical coherence tomography (OCT) and atomic force microscopy (AFM) have been individually applied to monitor the morphological and mechanical properties of various single-species biofilms respectively. This investigation looked to combine OCT and AFM as a multi-scale approach to understand ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23798-1

    authors: Pattem J,Davrandi M,Aguayo S,Allan E,Spratt D,Bozec L

    更新日期:2018-04-09 00:00:00