Onco-proteogenomics: cancer proteomics joins forces with genomics.

Abstract:

:The complexities of tumor genomes are rapidly being uncovered, but how they are regulated into functional proteomes remains poorly understood. Standard proteomics workflows use databases of known proteins, but these databases do not capture the uniqueness of the cancer transcriptome, with its point mutations, unusual splice variants and gene fusions. Onco-proteogenomics integrates mass spectrometry-generated data with genomic information to identify tumor-specific peptides. Linking tumor-derived DNA, RNA and protein measurements into a central-dogma perspective has the potential to improve our understanding of cancer biology.

journal_name

Nat Methods

journal_title

Nature methods

authors

Alfaro JA,Sinha A,Kislinger T,Boutros PC

doi

10.1038/nmeth.3138

subject

Has Abstract

pub_date

2014-11-01 00:00:00

pages

1107-13

issue

11

eissn

1548-7091

issn

1548-7105

pii

nmeth.3138

journal_volume

11

pub_type

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