Relative contributions of neutral and non-neutral genetic differentiation to inform conservation of steelhead trout across highly variable landscapes.

Abstract:

:Mounting evidence of climatic effects on riverine environments and adaptive responses of fishes have elicited growing conservation concerns. Measures to rectify population declines include assessment of local extinction risk, population ecology, viability, and genetic differentiation. While conservation planning has been largely informed by neutral genetic structure, there has been a dearth of critical information regarding the role of non-neutral or functional genetic variation. We evaluated genetic variation among steelhead trout of the Columbia River Basin, which supports diverse populations distributed among dynamic landscapes. We categorized 188 SNP loci as either putatively neutral or candidates for divergent selection (non-neutral) using a multitest association approach. Neutral variation distinguished lineages and defined broad-scale population structure consistent with previous studies, but fine-scale resolution was also detected at levels not previously observed. Within distinct coastal and inland lineages, we identified nine and 22 candidate loci commonly associated with precipitation or temperature variables and putatively under divergent selection. Observed patterns of non-neutral variation suggest overall climate is likely to shape local adaptation (e.g., potential rapid evolution) of steelhead trout in the Columbia River region. Broad geographic patterns of neutral and non-neutral variation demonstrated here can be used to accommodate priorities for regional management and inform long-term conservation of this species.

journal_name

Evol Appl

authors

Matala AP,Ackerman MW,Campbell MR,Narum SR

doi

10.1111/eva.12174

subject

Has Abstract

pub_date

2014-06-01 00:00:00

pages

682-701

issue

6

issn

1752-4571

journal_volume

7

pub_type

杂志文章
  • Preventive evolutionary medicine of cancers.

    abstract::Evolutionary theory predicts that once an individual reaches an age of sufficiently low Darwinian fitness, (s)he will have reduced chances of keeping cancerous lesions in check. While we clearly need to better understand the emergence of precursor states and early malignancies as well as their mitigation by the microe...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12033

    authors: Hochberg ME,Thomas F,Assenat E,Hibner U

    更新日期:2013-01-01 00:00:00

  • Identifying geographic hot spots of reassortment in a multipartite plant virus.

    abstract::Reassortment between different species or strains plays a key role in the evolution of multipartite plant viruses and can have important epidemiological implications. Identifying geographic locations where reassortant lineages are most likely to emerge could be a valuable strategy for informing disease management and ...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12156

    authors: Savory FR,Varma V,Ramakrishnan U

    更新日期:2014-05-01 00:00:00

  • Recovery of a nearly extinct Galápagos tortoise despite minimal genetic variation.

    abstract::A species of Galápagos tortoise endemic to Española Island was reduced to just 12 females and three males that have been bred in captivity since 1971 and have produced over 1700 offspring now repatriated to the island. Our molecular genetic analyses of juveniles repatriated to and surviving on the island indicate that...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12014

    authors: Milinkovitch MC,Kanitz R,Tiedemann R,Tapia W,Llerena F,Caccone A,Gibbs JP,Powell JR

    更新日期:2013-02-01 00:00:00

  • Contemporary evolution and the dynamics of invasion in crop-wild hybrids with heritable variation for two weedy life-histories.

    abstract::Gene flow in crop-wild complexes between phenotypically differentiated ancestors may transfer adaptive genetic variation that alters the fecundity and, potentially, the population growth (λ) of weeds. We created biotypes with potentially invasive traits, early flowering or long leaves, in wild radish (Raphanus raphani...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12366

    authors: Campbell LG,Teitel Z,Miriti MN

    更新日期:2016-02-28 00:00:00

  • Microarray analysis yields candidate markers for rotation resistance in the western corn rootworm beetle, Diabrotica virgifera virgifera.

    abstract::As pest species may evolve resistance to chemical controls, they may also evolve resistance to cultural control methods. Yearly rotation of corn (Zea mays) with another crop interrupts the life cycle of the western corn rootworm beetle (Diabrotica virgifera virgifera, Coleoptera: Chrysomelidae), but behavioral resista...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2009.00094.x

    authors: Knolhoff LM,Walden KK,Ratcliffe ST,Onstad DW,Robertson HM

    更新日期:2010-01-01 00:00:00

  • Corrigendum.

    abstract::[This corrects the article DOI: 10.1111/eva.12607.]. ...

    journal_title:Evolutionary applications

    pub_type: 已发布勘误

    doi:10.1111/eva.12800

    authors:

    更新日期:2019-11-01 00:00:00

  • The impact of fishing-induced mortality on the evolution of alternative life-history tactics in brook charr.

    abstract::Although contemporary trends indicative of evolutionary change have been detected in the life-history traits of exploited populations, it is not known to what extent fishing influences the evolution of alternative life-history tactics in migratory species such as salmonids. Here, we build a model to predict the evolut...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2008.00022.x

    authors: Thériault V,Dunlop ES,Dieckmann U,Bernatchez L,Dodson JJ

    更新日期:2008-05-01 00:00:00

  • Ecology and evolution of pathogens in natural populations of Lepidoptera.

    abstract::Pathogens are ubiquitous in insect populations and yet few studies examine their dynamics and impacts on host populations. We discuss four lepidopteran systems and explore their contributions to disease ecology and evolution. More specifically, we elucidate the role of pathogens in insect population dynamics. For thre...

    journal_title:Evolutionary applications

    pub_type: 杂志文章,评审

    doi:10.1111/eva.12328

    authors: Myers JH,Cory JS

    更新日期:2015-11-23 00:00:00

  • Direction and magnitude of natural selection on body size differ among age-classes of seaward-migrating Pacific salmon.

    abstract::Due to the mediating role of body size in determining fitness, the "bigger-is-better" hypothesis still pervades evolutionary ecology despite evidence that natural selection on phenotypic traits varies in time and space. For Pacific salmon (genus Oncorhynchus), most individual studies quantify selection across a narrow...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12957

    authors: Ulaski ME,Finkle H,Westley PAH

    更新日期:2020-04-09 00:00:00

  • Underutilized resources for studying the evolution of invasive species during their introduction, establishment, and lag phases.

    abstract::The early phases of biological invasions are poorly understood. In particular, during the introduction, establishment, and possible lag phases, it is unclear to what extent evolution must take place for an introduced species to transition from established to expanding. In this study, we highlight three disparate data ...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2009.00101.x

    authors: Marsico TD,Burt JW,Espeland EK,Gilchrist GW,Jamieson MA,Lindström L,Roderick GK,Swope S,Szűcs M,Tsutsui ND

    更新日期:2010-03-01 00:00:00

  • Hunting and mountain sheep: Do current harvest practices affect horn growth?

    abstract::The influence of human harvest on evolution of secondary sexual characteristics has implications for sustainable management of wildlife populations. The phenotypic consequences of selectively removing males with large horns or antlers from ungulate populations have been a topic of heightened concern in recent years. H...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12841

    authors: LaSharr TN,Long RA,Heffelfinger JR,Bleich VC,Krausman PR,Bowyer RT,Shannon JM,Klaver RW,Brewer CE,Cox M,Holland AA,Hubbs A,Lehman CP,Muir JD,Sterling B,Monteith KL

    更新日期:2019-07-29 00:00:00

  • Simulating local adaptation to climate of forest trees with a Physio-Demo-Genetics model.

    abstract::One challenge of evolutionary ecology is to predict the rate and mechanisms of population adaptation to environmental variations. The variations in most life history traits are shaped both by individual genotypic and by environmental variation. Forest trees exhibit high levels of genetic diversity, large population si...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12143

    authors: Oddou-Muratorio S,Davi H

    更新日期:2014-04-01 00:00:00

  • Plasticity and genetic adaptation mediate amphibian and reptile responses to climate change.

    abstract::Phenotypic plasticity and genetic adaptation are predicted to mitigate some of the negative biotic consequences of climate change. Here, we evaluate evidence for plastic and evolutionary responses to climate variation in amphibians and reptiles via a literature review and meta-analysis. We included studies that either...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12114

    authors: Urban MC,Richardson JL,Freidenfelds NA

    更新日期:2014-01-01 00:00:00

  • The genomics of domestication special issue editorial.

    abstract::Domestication has been of major interest to biologists for centuries, whether for creating new plants and animal types or more formally exploring the principles of evolution. Such studies have long used combinations of phenotypic and genetic evidence. Recently, the advent of a large number of genomes and genomic tools...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12693

    authors: Kantar MB,Bruford MW,Rieseberg LH

    更新日期:2018-09-17 00:00:00

  • Assessing strategies to minimize unintended fitness consequences of aquaculture on wild populations.

    abstract::Artificial propagation programs focused on production, such as commercial aquaculture or forestry, entail strong domestication selection. Spillover from such programs can cause unintended fitness and demographic consequences for wild conspecifics. The range of possible management practices to minimize such consequence...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12089

    authors: Baskett ML,Burgess SC,Waples RS

    更新日期:2013-11-01 00:00:00

  • Evolutionary ecology of Chagas disease; what do we know and what do we need?

    abstract::The aetiological agent of Chagas disease, Trypanosoma cruzi, is a key human pathogen afflicting most populations of Latin America. This vectorborne parasite is transmitted by haematophageous triatomines, whose control by large-scale insecticide spraying has been the main strategy to limit the impact of the disease for...

    journal_title:Evolutionary applications

    pub_type: 杂志文章,评审

    doi:10.1111/eva.12582

    authors: Flores-Ferrer A,Marcou O,Waleckx E,Dumonteil E,Gourbière S

    更新日期:2017-12-25 00:00:00

  • Tracing the origin of the early wet-season Anopheles coluzzii in the Sahel.

    abstract::In arid environments, the source of the malaria mosquito populations that re-establish soon after first rains remains a puzzle and alternative explanations have been proposed. Using genetic data, we evaluated whether the early rainy season (RS) population of Anopheles coluzzii is descended from the preceding late RS g...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12486

    authors: Lehmann T,Weetman D,Huestis DL,Yaro AS,Kassogue Y,Diallo M,Donnelly MJ,Dao A

    更新日期:2017-05-26 00:00:00

  • Predation shapes the impact of cancer on population dynamics and the evolution of cancer resistance.

    abstract::Cancer is a widespread disease that affects most of the metazoans. However, cancer development is a slow process and, long before causing the death of the individual, may weaken organisms' capacities and impair their interactions with other species. Yet, the impact of cancer development on biotic interactions, and ove...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12951

    authors: Perret C,Gidoin C,Ujvari B,Thomas F,Roche B

    更新日期:2020-06-26 00:00:00

  • Asymmetrical local adaptation of maize landraces along an altitudinal gradient.

    abstract::Crop landraces are managed populations that evolve in response to gene flow and selection. Cross-pollination among fields, seed sharing by farmers, and selection by management and environmental conditions play roles in shaping crop characteristics. We used common gardens to explore the local adaptation of maize (Zea m...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2008.00038.x

    authors: Mercer K,Martínez-Vásquez Á,Perales HR

    更新日期:2008-08-01 00:00:00

  • Genotyping-by-sequencing of genome-wide microsatellite loci reveals fine-scale harvest composition in a coastal Atlantic salmon fishery.

    abstract::Individual assignment and genetic mixture analysis are commonly utilized in contemporary wildlife and fisheries management. Although microsatellite loci provide unparalleled numbers of alleles per locus, their use in assignment applications is increasingly limited. However, next-generation sequencing, in conjunction w...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12606

    authors: Bradbury IR,Wringe BF,Watson B,Paterson I,Horne J,Beiko R,Lehnert SJ,Clément M,Anderson EC,Jeffery NW,Duffy S,Sylvester E,Robertson M,Bentzen P

    更新日期:2018-03-11 00:00:00

  • Range-wide population genomics of the Mexican fruit fly: Toward development of pathway analysis tools.

    abstract::Recurrently invading pests provide unique challenges for pest management, but also present opportunities to utilize genomics to understand invasion dynamics and inform regulatory management through pathway analysis. In the southern United States, the Mexican fruit fly Anastrepha ludens is such a pest, and its incursio...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12824

    authors: Dupuis JR,Ruiz-Arce R,Barr NB,Thomas DB,Geib SM

    更新日期:2019-06-13 00:00:00

  • Transcriptomic responses to emamectin benzoate in Pacific and Atlantic Canada salmon lice Lepeophtheirus salmonis with differing levels of drug resistance.

    abstract::Salmon lice Lepeophtheirus salmonis are an ecologically and economically important parasite of wild and farmed salmon. In Scotland, Norway, and Eastern Canada, L. salmonis have developed resistance to emamectin benzoate (EMB), one of the few parasiticides available for salmon lice. Drug resistance mechanisms can be co...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12237

    authors: Sutherland BJ,Poley JD,Igboeli OO,Jantzen JR,Fast MD,Koop BF,Jones SR

    更新日期:2015-02-01 00:00:00

  • Weird genotypes? Don't discard them, transmissible cancer could be an explanation.

    abstract::Genetic chimerism is rarely considered in the analysis of population genetics data, because assumed to be an exceptionally rare, mostly benign, developmental accident. An unappreciated source of chimerism is transmissible cancer, when malignant cells have become independent parasites and can infect other individuals. ...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12439

    authors: Riquet F,Simon A,Bierne N

    更新日期:2016-12-16 00:00:00

  • The sexually dimorphic on the Y-chromosome gene (sdY) is a conserved male-specific Y-chromosome sequence in many salmonids.

    abstract::All salmonid species investigated to date have been characterized with a male heterogametic sex-determination system. However, as these species do not share any Y-chromosome conserved synteny, there remains a debate on whether they share a common master sex-determining gene. In this study, we investigated the extent o...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12032

    authors: Yano A,Nicol B,Jouanno E,Quillet E,Fostier A,Guyomard R,Guiguen Y

    更新日期:2013-04-01 00:00:00

  • Fighting microbial drug resistance: a primer on the role of evolutionary biology in public health.

    abstract::Although microbes have been evolving resistance to antimicrobials for millennia, the spread of resistance in pathogen populations calls for the development of new drugs and treatment strategies. We propose that successful, long-term resistance management requires a better understanding of how resistance evolves in the...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12254

    authors: Perron GG,Inglis RF,Pennings PS,Cobey S

    更新日期:2015-03-01 00:00:00

  • A continuously changing selective context on microbial communities associated with fish, from egg to fork.

    abstract::Fast increase of fish aquaculture production to meet consumer demands is accompanied by important ecological concerns such as disease outbreaks. Meanwhile, food waste is an important concern with fish products since they are highly perishable. Recent aquaculture and fish product microbiology, and more recently, microb...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.13027

    authors: Derome N,Filteau M

    更新日期:2020-06-09 00:00:00

  • Phylogeographic diversification and postglacial range dynamics shed light on the conservation of the kelp Saccharina japonica.

    abstract::Studies of postglacial range shifts could enhance our understanding of seaweed species' responses to climate change and hence facilitate the conservation of natural resources. However, the distribution dynamics and phylogeographic diversification of the commercially and ecologically important kelp Saccharina japonica ...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12756

    authors: Zhang J,Yao J,Hu ZM,Jueterbock A,Yotsukura N,Krupnova TN,Nagasato C,Duan D

    更新日期:2019-01-12 00:00:00

  • The Trojan Female Technique for pest control: a candidate mitochondrial mutation confers low male fertility across diverse nuclear backgrounds in Drosophila melanogaster.

    abstract::Pest species represent a major ongoing threat to global biodiversity. Effective management approaches are required that regulate pest numbers, while minimizing collateral damage to nontarget species. The Trojan Female Technique (TFT) was recently proposed as a prospective approach to biological pest control. The TFT d...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12297

    authors: Dowling DK,Tompkins DM,Gemmell NJ

    更新日期:2015-10-01 00:00:00

  • Common garden comparisons of native and introduced plant populations: latitudinal clines can obscure evolutionary inferences.

    abstract::Common garden studies are increasingly used to identify differences in phenotypic traits between native and introduced genotypes, often ignoring sources of among-population variation within each range. We re-analyzed data from 32 common garden studies of 28 plant species that tested for rapid evolution associated with...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2008.00053.x

    authors: Colautti RI,Maron JL,Barrett SC

    更新日期:2009-05-01 00:00:00

  • Spatial structure facilitates the accumulation and persistence of antibiotic-resistant mutants in biofilms.

    abstract::The emergence and spread of antibiotic resistance in bacterial pathogens are a global crisis. Because many bacterial infections are caused by pathogens that reside in biofilms, we sought to investigate how biofilms influence the evolution of antibiotic resistance. We hypothesize that the inherent spatial structure of ...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12728

    authors: France MT,Cornea A,Kehlet-Delgado H,Forney LJ

    更新日期:2018-12-22 00:00:00