The genomics of domestication special issue editorial.

Abstract:

:Domestication has been of major interest to biologists for centuries, whether for creating new plants and animal types or more formally exploring the principles of evolution. Such studies have long used combinations of phenotypic and genetic evidence. Recently, the advent of a large number of genomes and genomic tools across a wide array of domesticated plant and animal species has reinvigorated the study of domestication. These genomic data, which can be easily generated for nearly any species, often provide great insight with or without a reference genome. The comparison of genome wide data from domestic and wild species has ignited a wave of insight into human, plant, and animal history with a new range of questions becoming accessible. With this in mind, this issue of Evolutionary Applications includes eleven papers covering a wide range of perspectives and methodologies relevant to understanding genomic variation under domestication.

journal_name

Evol Appl

authors

Kantar MB,Bruford MW,Rieseberg LH

doi

10.1111/eva.12693

subject

Has Abstract

pub_date

2018-09-17 00:00:00

pages

3-5

issue

1

issn

1752-4571

pii

EVA12693

journal_volume

12

pub_type

杂志文章
  • The Trojan Female Technique for pest control: a candidate mitochondrial mutation confers low male fertility across diverse nuclear backgrounds in Drosophila melanogaster.

    abstract::Pest species represent a major ongoing threat to global biodiversity. Effective management approaches are required that regulate pest numbers, while minimizing collateral damage to nontarget species. The Trojan Female Technique (TFT) was recently proposed as a prospective approach to biological pest control. The TFT d...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12297

    authors: Dowling DK,Tompkins DM,Gemmell NJ

    更新日期:2015-10-01 00:00:00

  • Extreme seascape drives local recruitment and genetic divergence in brooding and spawning corals in remote north-west Australia.

    abstract::Management strategies designed to conserve coral reefs threatened by climate change need to incorporate knowledge of the spatial distribution of inter- and intra-specific genetic diversity. We characterized patterns of genetic diversity and connectivity using single nucleotide polymorphisms (SNPs) in two reef-building...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.13033

    authors: Underwood JN,Richards Z,Berry O,Oades D,Howard A,Gilmour JP

    更新日期:2020-06-22 00:00:00

  • Evolutionary ecology of Chagas disease; what do we know and what do we need?

    abstract::The aetiological agent of Chagas disease, Trypanosoma cruzi, is a key human pathogen afflicting most populations of Latin America. This vectorborne parasite is transmitted by haematophageous triatomines, whose control by large-scale insecticide spraying has been the main strategy to limit the impact of the disease for...

    journal_title:Evolutionary applications

    pub_type: 杂志文章,评审

    doi:10.1111/eva.12582

    authors: Flores-Ferrer A,Marcou O,Waleckx E,Dumonteil E,Gourbière S

    更新日期:2017-12-25 00:00:00

  • Habitat-mediated size selection in endangered Atlantic salmon fry: selectional restoration assessment.

    abstract::Preservation of adaptive variation is a top priority of many species restoration programs, but most restoration activities are conducted without direct knowledge of selection that might foster or impair adaptation and restoration goals. In this study, we quantified geographic variation in selection on fry size of enda...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2010.00126.x

    authors: Bailey MM,Kinnison MT

    更新日期:2010-07-01 00:00:00

  • Mosaics, mixtures, rotations or pyramiding: What is the optimal strategy to deploy major gene resistance?

    abstract::Once deployed uniformly in the field, genetically controlled plant resistance is often quickly overcome by pathogens, resulting in dramatic losses. Several strategies have been proposed to constrain the evolutionary potential of pathogens and thus increase resistance durability. These strategies can be classified into...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12681

    authors: Rimbaud L,Papaïx J,Barrett LG,Burdon JJ,Thrall PH

    更新日期:2018-09-17 00:00:00

  • Virulence and resistance in a mosquito-microsporidium interaction.

    abstract::We review the results of a series of experiments involving Aedes aegypti and its microsporidian parasite Vavraia culicis to illustrate how intra-specific competition and parasitism shape life history traits. More specifically these experiments showed that some major components of virulence are host condition-dependent...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2007.00004.x

    authors: Michalakis Y,Bédhomme S,Biron DG,Rivero A,Sidobre C,Agnew P

    更新日期:2008-02-01 00:00:00

  • The evolution of new enzyme function: lessons from xenobiotic metabolizing bacteria versus insecticide-resistant insects.

    abstract::Here, we compare the evolutionary routes by which bacteria and insects have evolved enzymatic processes for the degradation of four classes of synthetic chemical insecticide. For insects, the selective advantage of such degradative activities is survival on exposure to the insecticide, whereas for the bacteria the adv...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2010.00175.x

    authors: Russell RJ,Scott C,Jackson CJ,Pandey R,Pandey G,Taylor MC,Coppin CW,Liu JW,Oakeshott JG

    更新日期:2011-03-01 00:00:00

  • Host plants and Wolbachia shape the population genetics of sympatric herbivore populations.

    abstract::Changing climate and land-use practices have the potential to bring previously isolated populations of pest insects into new sympatry. This heightens the need to better understand how differing patterns of host-plant association, and unique endosymbionts, serve to promote genetic isolation or integration. We addressed...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.13079

    authors: Fu Z,Meier AR,Epstein B,Bergland AO,Castillo Carrillo CI,Cooper WR,Cruzado RK,Horton DR,Jensen AS,Kelley JL,Rashed A,Reitz SR,Rondon SI,Thinakaran J,Wenninger EJ,Wohleb CH,Crowder DW,Snyder WE

    更新日期:2020-09-12 00:00:00

  • Genetic correlations between adults and larvae in a marine fish: potential effects of fishery selection on population replenishment.

    abstract::Correlated genetic responses have been hypothesized as important components of fishery-induced evolution, although predictive data from wild populations have been difficult to obtain. Here, we demonstrate substantial genetic correlations between a trait often subjected to fishery selection (adult body length) and trai...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2011.00185.x

    authors: Johnson DW,Christie MR,Moye J,Hixon MA

    更新日期:2011-09-01 00:00:00

  • Peto's paradox revisited: theoretical evolutionary dynamics of cancer in wild populations.

    abstract::If the occurrence of cancer is the result of a random lottery among cells, then body mass, a surrogate for cells number, should predict cancer incidence. Despite some support in humans, this assertion does not hold over the range of different natural animal species where cancer incidence is known. Explaining the so-ca...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12025

    authors: Roche B,Sprouffske K,Hbid H,Missé D,Thomas F

    更新日期:2013-01-01 00:00:00

  • Invest more and die faster: The life history of a parasite on intensive farms.

    abstract::Organisms are expected to respond to alterations in their survival by evolutionary changes in their life history traits. As agriculture and aquaculture have become increasingly intensive in the past decades, there has been growing interest in their evolutionary effects on the life histories of agri- and aquacultural p...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12488

    authors: Mennerat A,Ugelvik MS,Håkonsrud Jensen C,Skorping A

    更新日期:2017-06-21 00:00:00

  • Hybridization and the spread of the apple maggot fly, Rhagoletis pomonella (Diptera: Tephritidae), in the northwestern United States.

    abstract::Hybridization may be an important process interjecting variation into insect populations enabling host plant shifts and the origin of new economic pests. Here, we examine whether hybridization between the native snowberry-infesting fruit fly Rhagoletis zephyria (Snow) and the introduced quarantine pest R. pomonella (W...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12298

    authors: Arcella T,Hood GR,Powell TH,Sim SB,Yee WL,Schwarz D,Egan SP,Goughnour RB,Smith JJ,Feder JL

    更新日期:2015-09-01 00:00:00

  • Range-wide population genomics of the Mexican fruit fly: Toward development of pathway analysis tools.

    abstract::Recurrently invading pests provide unique challenges for pest management, but also present opportunities to utilize genomics to understand invasion dynamics and inform regulatory management through pathway analysis. In the southern United States, the Mexican fruit fly Anastrepha ludens is such a pest, and its incursio...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12824

    authors: Dupuis JR,Ruiz-Arce R,Barr NB,Thomas DB,Geib SM

    更新日期:2019-06-13 00:00:00

  • Population genomics analyses of European ibex species show lower diversity and higher inbreeding in reintroduced populations.

    abstract::Restoration of lost species ranges to their native distribution is key for the survival of endangered species. However, reintroductions often fail and long-term genetic consequences are poorly understood. Alpine ibex (Capra ibex) are wild goats that recovered from <100 individuals to ~50,000 within a century by popula...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12490

    authors: Grossen C,Biebach I,Angelone-Alasaad S,Keller LF,Croll D

    更新日期:2017-10-27 00:00:00

  • Adaptation to drought is coupled with slow growth, but independent from phenology in marginal silver fir (Abies alba Mill.) populations.

    abstract::Drought is one of the most important selection pressures for forest trees in the context of climate change. Yet, the different evolutionary mechanisms, and their environmental drivers, by which certain populations become more drought tolerant than others is still little understood. We studied adaptation to drought in ...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.13029

    authors: Csilléry K,Buchmann N,Fady B

    更新日期:2020-06-17 00:00:00

  • Common garden comparisons of native and introduced plant populations: latitudinal clines can obscure evolutionary inferences.

    abstract::Common garden studies are increasingly used to identify differences in phenotypic traits between native and introduced genotypes, often ignoring sources of among-population variation within each range. We re-analyzed data from 32 common garden studies of 28 plant species that tested for rapid evolution associated with...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2008.00053.x

    authors: Colautti RI,Maron JL,Barrett SC

    更新日期:2009-05-01 00:00:00

  • Fates beyond traits: ecological consequences of human-induced trait change.

    abstract::Human-induced trait change has been documented in freshwater, marine, and terrestrial ecosystems worldwide. These trait changes are driven by phenotypic plasticity and contemporary evolution. While efforts to manage human-induced trait change are beginning to receive some attention, managing its ecological consequence...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2011.00212.x

    authors: Palkovacs EP,Kinnison MT,Correa C,Dalton CM,Hendry AP

    更新日期:2012-02-01 00:00:00

  • Fine-scale seascape genomics of an exploited marine species, the common cockle Cerastoderma edule, using a multimodelling approach.

    abstract::Population dynamics of marine species that are sessile as adults are driven by oceanographic dispersal of larvae from spawning to nursery grounds. This is mediated by life-history traits such as the timing and frequency of spawning, larval behaviour and duration, and settlement success. Here, we use 1725 single nucleo...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12932

    authors: Coscia I,Wilmes SB,Ironside JE,Goward-Brown A,O'Dea E,Malham SK,McDevitt AD,Robins PE

    更新日期:2020-02-24 00:00:00

  • Managing cryptic biodiversity: Fine-scale intralacustrine speciation along a benthic gradient in Alpine whitefish (Coregonus spp.).

    abstract::Whitefish (Coregonus spp.) are an important catch for many freshwater fisheries, particularly in Switzerland. In support of this, supplemental stocking of whitefish species is carried out, despite lacking complete knowledge of the extent, distribution and origin of whitefish diversity in these lakes, potentially threa...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12446

    authors: Hudson AG,Lundsgaard-Hansen B,Lucek K,Vonlanthen P,Seehausen O

    更新日期:2016-12-20 00:00:00

  • Genes predict long distance migration and large body size in a migratory fish, Pacific lamprey.

    abstract::Elucidation of genetic mechanisms underpinning migratory behavior could help predict how changes in genetic diversity may affect future spatiotemporal distribution of a migratory species. This ability would benefit conservation of one such declining species, anadromous Pacific lamprey (Entosphenus tridentatus). Nonphi...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12203

    authors: Hess JE,Caudill CC,Keefer ML,McIlraith BJ,Moser ML,Narum SR

    更新日期:2014-12-01 00:00:00

  • Cancer stem cells as 'units of selection'.

    abstract::Cancer development is widely recognized to be a somatic cell evolutionary process with complex dynamics and highly variable time frames. Variant cells and descendent subclones gain competitive advantage via their fitness in relation to micro-environmental selective pressures. In this context, the 'unit' of selection i...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12017

    authors: Greaves M

    更新日期:2013-01-01 00:00:00

  • Adaptive genetic markers discriminate migratory runs of Chinook salmon (Oncorhynchus tshawytscha) amid continued gene flow.

    abstract::Neutral genetic markers are routinely used to define distinct units within species that warrant discrete management. Human-induced changes to gene flow however may reduce the power of such an approach. We tested the efficiency of adaptive versus neutral genetic markers in differentiating temporally divergent migratory...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12095

    authors: O'Malley KG,Jacobson DP,Kurth R,Dill AJ,Banks MA

    更新日期:2013-12-01 00:00:00

  • Life-history evolution and elevated natural mortality in a population of Atlantic cod (Gadus morhua).

    abstract::Fisheries-induced evolution has been hypothesized to delay the recovery of collapsed fish stocks through effects on their productivity. The cod stock in the southern Gulf of St. Lawrence (SGSL) collapsed in the early 1990s and has shown no recovery since then, due mainly to high natural mortality of adult cod. Age and...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2010.00128.x

    authors: Swain DP

    更新日期:2011-01-01 00:00:00

  • Genome-wide SNPs resolve spatiotemporal patterns of connectivity within striped marlin (Kajikia audax), a broadly distributed and highly migratory pelagic species.

    abstract::Genomic methodologies offer unprecedented opportunities for statistically robust studies of species broadly distributed in environments conducive to high gene flow, providing valuable information for wildlife conservation and management. Here, we sequence restriction site-associated DNA to characterize genome-wide sin...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12892

    authors: Mamoozadeh NR,Graves JE,McDowell JR

    更新日期:2019-11-22 00:00:00

  • Pattern of local adaptation to quantitative host resistance in a major pathogen of a perennial crop.

    abstract::Understanding the mechanisms involved in pathogen adaptation to quantitative resistance in plants has a key role to play in establishing durable strategies for resistance deployment, especially in perennial crops. The erosion of quantitative resistance has been recently suspected in Cuba and the Dominican Republic for...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12904

    authors: Dumartinet T,Abadie C,Bonnot F,Carreel F,Roussel V,Habas R,Martinez RT,Perez-Vicente L,Carlier J

    更新日期:2019-12-31 00:00:00

  • Long-term urbanization impacts the eastern golden frog (Pelophylax plancyi) in Shanghai City: Demographic history, genetic structure, and implications for amphibian conservation in intensively urbanizing environments.

    abstract::Understanding the mechanisms of how urbanization influences the evolution of native species is vital for urban wildlife ecology and conservation in the Anthropocene. With thousands of years of agriculture-dominated historical urbanization followed by 40 years of intensive and rapid urbanization, Shanghai provides an i...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.13156

    authors: Wei X,Huang M,Yue Q,Ma S,Li B,Mu Z,Peng C,Gao W,Liu W,Zheng J,Weng X,Sun X,Zuo Q,Bo S,Yuan X,Zhang W,Yang G,Ding Y,Wang X,Wang T,Hua P,Wang Z

    更新日期:2020-11-07 00:00:00

  • Assessing strategies to minimize unintended fitness consequences of aquaculture on wild populations.

    abstract::Artificial propagation programs focused on production, such as commercial aquaculture or forestry, entail strong domestication selection. Spillover from such programs can cause unintended fitness and demographic consequences for wild conspecifics. The range of possible management practices to minimize such consequence...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/eva.12089

    authors: Baskett ML,Burgess SC,Waples RS

    更新日期:2013-11-01 00:00:00

  • Genetic and maternal effects on tail spine and body length in the invasive spiny water flea (Bythotrephes longimanus).

    abstract::Interest in the evolution of invasive species has grown in recent years, yet few studies have investigated sources of variation in invasive species traits experiencing natural selection. The spiny water flea, Bythotrephes longimanus, is an invasive zooplankton in the Great Lakes that exhibits seasonal changes in tail ...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2011.00221.x

    authors: Miehls AL,Peacor SD,McAdam AG

    更新日期:2012-04-01 00:00:00

  • Potential responses to climate change in organisms with complex life histories: evolution and plasticity in Pacific salmon.

    abstract::Salmon life histories are finely tuned to local environmental conditions, which are intimately linked to climate. We summarize the likely impacts of climate change on the physical environment of salmon in the Pacific Northwest and discuss the potential evolutionary consequences of these changes, with particular refere...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2008.00033.x

    authors: Crozier LG,Hendry AP,Lawson PW,Quinn TP,Mantua NJ,Battin J,Shaw RG,Huey RB

    更新日期:2008-05-01 00:00:00

  • The impact of fishing-induced mortality on the evolution of alternative life-history tactics in brook charr.

    abstract::Although contemporary trends indicative of evolutionary change have been detected in the life-history traits of exploited populations, it is not known to what extent fishing influences the evolution of alternative life-history tactics in migratory species such as salmonids. Here, we build a model to predict the evolut...

    journal_title:Evolutionary applications

    pub_type: 杂志文章

    doi:10.1111/j.1752-4571.2008.00022.x

    authors: Thériault V,Dunlop ES,Dieckmann U,Bernatchez L,Dodson JJ

    更新日期:2008-05-01 00:00:00