A 4D neonatal head model for diffuse optical imaging of pre-term to term infants.

Abstract:

:Diffuse optical tomography is most accurate when an individual's MRI data can be used as a spatial prior for image reconstruction and for visualization of the resulting images of changes in oxy- and deoxy-hemoglobin concentration. As this necessitates an MRI scan to be performed for each study, which undermines many of the advantages of diffuse optical methods, the use of registered atlases to model the individual's anatomy is becoming commonplace. Infant studies require carefully age-matched atlases because of the rapid growth and maturation of the infant brain. In this paper, we present a 4D neonatal head model which, for each week from 29 to 44 weeks post-menstrual age, includes: 1) a multi-layered tissue mask which identifies extra-cerebral layers, cerebrospinal fluid, gray matter, white matter, cerebellum and brainstem, 2) a high-density tetrahedral head mesh, 3) surface meshes for the scalp, gray-matter and white matter layers and 4) cranial landmarks and 10-5 locations on the scalp surface. This package, freely available online at www.ucl.ac.uk/medphys/research/4dneonatalmodel can be applied by users of near-infrared spectroscopy and diffuse optical tomography to optimize probe locations, optimize image reconstruction, register data to cortical locations and ultimately improve the accuracy and interpretation of diffuse optical techniques in newborn populations.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Brigadoi S,Aljabar P,Kuklisova-Murgasova M,Arridge SR,Cooper RJ

doi

10.1016/j.neuroimage.2014.06.028

subject

Has Abstract

pub_date

2014-10-15 00:00:00

pages

385-94

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(14)00505-9

journal_volume

100

pub_type

杂志文章
  • The Dynamics of Belief Updating in Human Cooperation: Findings from inter-brain ERP hyperscanning.

    abstract::Generally, successful cooperation can only be established when the interacting persons believe that they would not be betrayed; this belief can be updated by observing the other persons' actual choices. Thus, the process of belief updating plays an important role in conditional cooperation. Using the Prisoner's Dilemm...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.05.029

    authors: Zhang D,Lin Y,Jing Y,Feng C,Gu R

    更新日期:2019-09-01 00:00:00

  • The New York Head-A precise standardized volume conductor model for EEG source localization and tES targeting.

    abstract::In source localization of electroencephalograpic (EEG) signals, as well as in targeted transcranial electric current stimulation (tES), a volume conductor model is required to describe the flow of electric currents in the head. Boundary element models (BEM) can be readily computed to represent major tissue compartment...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.12.019

    authors: Huang Y,Parra LC,Haufe S

    更新日期:2016-10-15 00:00:00

  • Can high-field MREIT be used to directly detect neural activity? Theoretical considerations.

    abstract::We sought to determine the feasibility of directly studying neural tissue activity by analysis of differential phase shifts in MRI signals that occurred when trickle currents were applied to a bath containing active or resting neural tissue. We developed a finite element bidomain model of an aplysia abdominal ganglion...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.04.005

    authors: Sadleir RJ,Grant SC,Woo EJ

    更新日期:2010-08-01 00:00:00

  • Task-dependent activations of human auditory cortex during spatial discrimination and spatial memory tasks.

    abstract::In the present study, we applied high-resolution functional magnetic resonance imaging (fMRI) of the human auditory cortex (AC) and adjacent areas to compare activations during spatial discrimination and spatial n-back memory tasks that were varied parametrically in difficulty. We found that activations in the anterio...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.10.069

    authors: Rinne T,Koistinen S,Talja S,Wikman P,Salonen O

    更新日期:2012-02-15 00:00:00

  • The effect of preceding context on inhibition: an event-related fMRI study.

    abstract::In this study we combined event-related fMRI with a parametric manipulation of the go nogo paradigm to examine the effect of preceding context on inhibitory processes. Nogo trials were preceded by either 1, 3, or 5 go trials and then compared to one another. Two distinct patterns of activation were associated with beh...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1074

    authors: Durston S,Thomas KM,Worden MS,Yang Y,Casey BJ

    更新日期:2002-06-01 00:00:00

  • Children with dyslexia lack multiple specializations along the visual word-form (VWF) system.

    abstract::Developmental dyslexia has been associated with a dysfunction of a brain region in the left inferior occipitotemporal cortex, called the "visual word-form area" (VWFA). In adult normal readers, the VWFA is specialized for print processing and sensitive to the orthographic familiarity of letter strings. However, it is ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.05.021

    authors: van der Mark S,Bucher K,Maurer U,Schulz E,Brem S,Buckelmüller J,Kronbichler M,Loenneker T,Klaver P,Martin E,Brandeis D

    更新日期:2009-10-01 00:00:00

  • Dynamic time warping outperforms Pearson correlation in detecting atypical functional connectivity in autism spectrum disorders.

    abstract::Resting state fMRI (rsfMRI) is frequently used to study brain function, including in clinical populations. Similarity of blood-oxygen-level-dependent (BOLD) fluctuations during rsfMRI between brain regions is thought to reflect intrinsic functional connectivity (FC), potentially due to history of coactivation. To quan...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117383

    authors: Linke AC,Mash LE,Fong CH,Kinnear MK,Kohli JS,Wilkinson M,Tung R,Jao Keehn RJ,Carper RA,Fishman I,Müller RA

    更新日期:2020-12-01 00:00:00

  • Searchlight-based multi-voxel pattern analysis of fMRI by cross-validated MANOVA.

    abstract::Multi-voxel pattern analysis (MVPA) is a fruitful and increasingly popular complement to traditional univariate methods of analyzing neuroimaging data. We propose to replace the standard 'decoding' approach to searchlight-based MVPA, measuring the performance of a classifier by its accuracy, with a method based on the...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.11.043

    authors: Allefeld C,Haynes JD

    更新日期:2014-04-01 00:00:00

  • Imaging brain hemodynamic changes during rat forepaw electrical stimulation using functional photoacoustic microscopy.

    abstract::The present study reported the development of a novel functional photoacoustic microscopy (fPAM) system for investigating hemodynamic changes in rat cortical vessels associated with electrical forepaw stimulation. Imaging of blood optical absorption by fPAM at multiple appropriately-selected and distinct wavelengths c...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.03.065

    authors: Liao LD,Li ML,Lai HY,Shih YY,Lo YC,Tsang S,Chao PC,Lin CT,Jaw FS,Chen YY

    更新日期:2010-08-15 00:00:00

  • Ethical issues in global neuroimaging genetics collaborations.

    abstract::Neuroimaging genetics is a rapidly developing field that combines neuropsychiatric genetics studies with imaging modalities to investigate how genetic variation influences brain structure and function. As both genetic and imaging technologies improve further, their combined power may hold translational potential in te...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117208

    authors: Palk A,Illes J,Thompson PM,Stein DJ

    更新日期:2020-11-01 00:00:00

  • Oxygen metabolism, oxygen extraction and positron emission tomography: Historical perspective and impact on basic and clinical neuroscience.

    abstract::Oxygen utilization is central to the human brain's high metabolic rate. Measurement of this fundamental process, in both disease and health, has been a focus of research attention over the last 35 years. This review plots the course of the use of oxygen-15 to study regional cerebral oxygen extraction and metabolism us...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2011.12.036

    authors: Baron JC,Jones T

    更新日期:2012-06-01 00:00:00

  • Disentangling in vivo the effects of iron content and atrophy on the ageing human brain.

    abstract::Evidence from magnetic resonance imaging (MRI) studies shows that healthy aging is associated with profound changes in cortical and subcortical brain structures. The reliable delineation of cortex and basal ganglia using automated computational anatomy methods based on T1-weighted images remains challenging, which res...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.09.044

    authors: Lorio S,Lutti A,Kherif F,Ruef A,Dukart J,Chowdhury R,Frackowiak RS,Ashburner J,Helms G,Weiskopf N,Draganski B

    更新日期:2014-12-01 00:00:00

  • Battery powered thought: enhancement of attention, learning, and memory in healthy adults using transcranial direct current stimulation.

    abstract::This article reviews studies demonstrating enhancement with transcranial direct current stimulation (tDCS) of attention, learning, and memory processes in healthy adults. Given that these are fundamental cognitive functions, they may also mediate stimulation effects on other higher-order processes such as decision-mak...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2013.07.083

    authors: Coffman BA,Clark VP,Parasuraman R

    更新日期:2014-01-15 00:00:00

  • The effect of switching between sequential and repetitive movements on cortical activation.

    abstract::We used whole-head functional magnetic resonance imaging (fMRI) to investigate the effect of switching between different sequential and repetitive movements in the context of conditional and fixed tasks. Four different movement tasks were applied: (1) unpredictable switching between two movement sequences comprising s...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2000.0626

    authors: Jäncke L,Himmelbach M,Shah NJ,Zilles K

    更新日期:2000-11-01 00:00:00

  • fMRI assessment of language lateralization: an objective approach.

    abstract::Language lateralization based on functional magnetic resonance imaging (fMRI) is often used in clinical neurological settings. Currently, interpretation of the distribution, pattern and extent of language activation can be heavily dependent on the chosen statistical threshold. The aim of the present study was to 1) te...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.01.059

    authors: Abbott DF,Waites AB,Lillywhite LM,Jackson GD

    更新日期:2010-05-01 00:00:00

  • White matter microstructural variability mediates the relation between obesity and cognition in healthy adults.

    abstract::Obesity has been linked with structural and functional brain changes. However, the impact of obesity on brain and cognition in aging remains debatable, especially for white matter. We therefore aimed to determine the effects of obesity on white matter microstructure and potential implications for cognition in a well-c...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.01.028

    authors: Zhang R,Beyer F,Lampe L,Luck T,Riedel-Heller SG,Loeffler M,Schroeter ML,Stumvoll M,Villringer A,Witte AV

    更新日期:2018-05-15 00:00:00

  • Cognitive processing speed and the structure of white matter pathways: convergent evidence from normal variation and lesion studies.

    abstract::We investigated the relation between cognitive processing speed and structural properties of white matter pathways via convergent imaging studies in healthy and brain-injured groups. Voxel-based morphometry (VBM) was applied to diffusion tensor imaging data from thirty-nine young healthy subjects in order to investiga...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.03.057

    authors: Turken A,Whitfield-Gabrieli S,Bammer R,Baldo JV,Dronkers NF,Gabrieli JD

    更新日期:2008-08-15 00:00:00

  • Comparator and non-comparator mechanisms of change detection in the context of speech--an ERP study.

    abstract::Automatic change detection reflects a cognitive memory-based comparison mechanism as well as a sensorial non-comparator mechanism based on differential states of refractoriness. The purpose of this study was to examine whether the comparator mechanism of the mismatch negativity component (MMN) is differentially affect...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.09.010

    authors: Laufer I,Negishi M,Constable RT

    更新日期:2009-01-15 00:00:00

  • Multifaceted genomic risk for brain function in schizophrenia.

    abstract::Recently, deriving candidate endophenotypes from brain imaging data has become a valuable approach to study genetic influences on schizophrenia (SZ), whose pathophysiology remains unclear. In this work we utilized a multivariate approach, parallel independent component analysis, to identify genomic risk components ass...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.03.022

    authors: Chen J,Calhoun VD,Pearlson GD,Ehrlich S,Turner JA,Ho BC,Wassink TH,Michael AM,Liu J

    更新日期:2012-07-16 00:00:00

  • Parametric analysis of rate-dependent hemodynamic response functions of cortical and subcortical brain structures during auditorily cued finger tapping: a fMRI study.

    abstract::A multitude of functional imaging studies revealed a mass activation effect at the level of the sensorimotor cortex during repetitive finger-tapping or finger-to-thumb opposition tasks in terms of either a stepwise or a monotonic relationship between movement rate and hemodynamic response. With respect to subcortical ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/s1053-8119(03)00003-x

    authors: Riecker A,Wildgruber D,Mathiak K,Grodd W,Ackermann H

    更新日期:2003-03-01 00:00:00

  • The influence of brain tumor treatment on pathological delta activity in MEG.

    abstract::The goal of the MEG study was to investigate the influence of tumor treatment on pathological delta activity (1-4 Hz). The treatment consisted of neurosurgery, and in some of the patients, additional radiotherapy. MEG and MR recordings were made both before and after the treatment in 17 patients. The signal power in t...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2003.07.030

    authors: de Jongh A,Baayen JC,de Munck JC,Heethaar RM,Vandertop WP,Stam CJ

    更新日期:2003-12-01 00:00:00

  • Oxytocin reduces neural activity in the pain circuitry when seeing pain in others.

    abstract::Our empathetic abilities allow us to feel the pain of others. This phenomenon of vicarious feeling arises because the neural circuitry of feeling pain and seeing pain in others is shared. The neuropeptide oxytocin (OXT) is considered a robust facilitator of empathy, as intranasal OXT studies have repeatedly been shown...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.03.049

    authors: Bos PA,Montoya ER,Hermans EJ,Keysers C,van Honk J

    更新日期:2015-06-01 00:00:00

  • Evaluating the consistency and specificity of neuroimaging data using meta-analysis.

    abstract::Making sense of a neuroimaging literature that is growing in scope and complexity will require increasingly sophisticated tools for synthesizing findings across studies. Meta-analysis of neuroimaging studies fills a unique niche in this process: It can be used to evaluate the consistency of findings across different l...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2008.10.061

    authors: Wager TD,Lindquist MA,Nichols TE,Kober H,Van Snellenberg JX

    更新日期:2009-03-01 00:00:00

  • Functional brain interactions that serve cognitive-affective processing during pain and placebo analgesia.

    abstract::Pain requires the integration of sensory, cognitive, and affective information. The use of placebo is a common methodological ploy in many fields, including pain. Neuroimaging studies of pain and placebo analgesia (PA) have yet to identify a mechanism of action. Because PA must result from higher order processes, it i...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.07.057

    authors: Craggs JG,Price DD,Verne GN,Perlstein WM,Robinson MM

    更新日期:2007-12-01 00:00:00

  • Gradient and shim technologies for ultra high field MRI.

    abstract::Ultra High Field (UHF) MRI requires improved gradient and shim performance to fully realize the promised gains (SNR as well as spatial, spectral, diffusion resolution) that higher main magnetic fields offer. Both the more challenging UHF environment by itself, as well as the higher currents used in high performance co...

    journal_title:NeuroImage

    pub_type: 杂志文章,评审

    doi:10.1016/j.neuroimage.2016.11.033

    authors: Winkler SA,Schmitt F,Landes H,de Bever J,Wade T,Alejski A,Rutt BK

    更新日期:2018-03-01 00:00:00

  • Ageing shows a pattern of cerebellar degeneration analogous, but not equal, to that in patients suffering from cerebellar degenerative disease.

    abstract::Ageing generally leads to impairments in cognitive function and the ability to execute and learn new movements. While the causes of these impairments are often multi-factorial, integrity of the cerebellum in an elderly population is an important predictive factor of both motor function and cognitive function. A simila...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.03.084

    authors: Hulst T,van der Geest JN,Thürling M,Goericke S,Frens MA,Timmann D,Donchin O

    更新日期:2015-08-01 00:00:00

  • The same analysis approach: Practical protection against the pitfalls of novel neuroimaging analysis methods.

    abstract::Standard neuroimaging data analysis based on traditional principles of experimental design, modelling, and statistical inference is increasingly complemented by novel analysis methods, driven e.g. by machine learning methods. While these novel approaches provide new insights into neuroimaging data, they often have une...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.12.083

    authors: Görgen K,Hebart MN,Allefeld C,Haynes JD

    更新日期:2018-10-15 00:00:00

  • WITHDRAWN: Neurofeedback-mediated self-regulation of the dopaminergic midbrain.

    abstract::The publisher regrets due to an error in the publishing process the above articles was accidentally withdrawn and has now been published in (Neuroimage 83C December 2013 https://doi.org/10.1016/j.neuroimage.2013.05.115). The publisher would like to apologize for any inconvenience caused. ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.02.041

    authors: Sulzer J,Sitaram R,Blefari ML,Kollias S,Birbaumer N,Stephan KE,Luft A,Gassert R

    更新日期:2013-07-15 00:00:00

  • Reduction of motion-related artifacts in resting state fMRI using aCompCor.

    abstract::Recent studies have illustrated that motion-related artifacts remain in resting-state fMRI (rs-fMRI) data even after common corrective processing procedures have been applied, but the extent to which head motion distorts the data may be modulated by the corrective approach taken. We compare two different methods for e...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.03.028

    authors: Muschelli J,Nebel MB,Caffo BS,Barber AD,Pekar JJ,Mostofsky SH

    更新日期:2014-08-01 00:00:00

  • Decoding the motion aftereffect in human visual cortex.

    abstract::In the motion aftereffect (MAE), adapting to a moving stimulus causes a subsequently presented stationary stimulus to appear to move in the opposite direction. Recently, the neural basis of the motion aftereffect has received considerable interest, and a number of brain areas have been implicated in the generation of ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.06.034

    authors: Hogendoorn H,Verstraten FA

    更新日期:2013-11-15 00:00:00