Cloning, expression, and characterization of a thermostable GH51 α-L-arabinofuranosidase from Paenibacillus sp. DG-22.

Abstract:

:The gene encoding α-L-arabinofuranosidase (AFase) from Paenibacillus sp. DG-22 was cloned, sequenced, and expressed in Escherichia coli. The AFase gene (abfA) comprises a 1,509 bp open reading frame encoding 502 amino acids with a molecular mass of 56,520 daltons. The deduced amino acid sequence of the gene shows that AbfA is an enzyme consisting of only a catalytic domain, and that the enzyme has significant similarity to AFases classified into the family 51 of the glycosyl hydrolases. abfA was subcloned into the pQE60 expression vector to fuse it with a six-histidine tag and the recombinant AFase (rAbfA) was purified to homogeneity. The specific activity of the recombinant enzyme was 96.7 U/mg protein. Determination of the apparent molecular mass by gel-filtration chromatography indicated that AbfA has a tetrameric structure. The optimal pH and temperature of the enzyme were 6.0 and 60°C, respectively. The enzyme activity was completely inhibited by 1 mM HgCl2. rAbfA was active only towards p-nitrophephenyl α-L-arabinofuranoside and exhibited Km and Vmax values of 3.5 mM and 306.1 U/mg, respectively. rAbfA showed a synergistic effect in combination with endoxylanase on the degradation of oat spelt xylan and wheat arabinoxylan.

journal_name

J Microbiol Biotechnol

authors

Lee SH,Lee YE

doi

10.4014/jmb.1308.08078

subject

Has Abstract

pub_date

2014-02-28 00:00:00

pages

236-44

issue

2

eissn

1017-7825

issn

1738-8872

pii

10.4014/jmb.1308.08078

journal_volume

24

pub_type

杂志文章
  • Antiinflammatory effect of lactic acid bacteria: inhibition of cyclooxygenase-2 by suppressing nuclear factor-kappaB in Raw264.7 macrophage cells.

    abstract::Lactobacillus casei 3260 (L. casei 3260) was evaluated in relation to the inflammatory response mediated by lipopolysaccharide (LPS)-induced nuclear factor-kappaB (NF-kappaB) and cyclooxygenase-2 (COX-2) expression in Raw264.7 macrophage cells. The treatment of Raw264.7 cells with L. casei 3260 significantly inhibited...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Lee JM,Hwang KT,Jun WJ,Park CS,Lee MY

    更新日期:2008-10-01 00:00:00

  • Conessine Treatment Reduces Dexamethasone-Induced Muscle Atrophy by Regulating MuRF1 and Atrogin-1 Expression.

    abstract::Conessine, a steroidal alkaloid, is a potent histamine H3 antagonist with antimalarial activity. We recently reported that conessine treatment interferes with H₂O₂-induced cell death by regulating autophagy. However, the cellular signaling pathways involved in conessine treatment are not fully understood. Here, we rep...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1711.11009

    authors: Kim H,Jang M,Park R,Jo D,Choi I,Choe J,Oh WK,Park J

    更新日期:2018-04-28 00:00:00

  • Biodegradation of di-n-butyl phthalate by Rhodococcus sp. JDC-11 and molecular detection of 3, 4-phthalate dioxygenase gene.

    abstract::Rhodococcus sp. JDC-11, capable of utilizing di-n-butyl phthalate (DBP) as the sole source of carbon and energy, was isolated from sewage sludge and confirmed mainly based on 16S rRNA gene sequence analysis. The optimum pH, temperature, and agitation rate for DBP degradation by Rhodococcus sp. JDC-11 was 8.0, 30 degre...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1004.04034

    authors: Jin DC,Liang RX,Dai QY,Zhang RY,Wu XL,Chao WL

    更新日期:2010-10-01 00:00:00

  • Lipoteichoic acid from Lactobacillus plantarum inhibits the expression of platelet-activating factor receptor induced by Staphylococcus aureus lipoteichoic acid or Escherichia coli lipopolysaccharide in human monocyte-like cells.

    abstract::Platelet-activating factor receptor (PAFR) plays an important role in bacterial infection and inflammation. We examined the effect of the bacterial cell wall components lipopolysaccharide (LPS) and lipoteichoic acid (LTA) from Lactobacillus plantarum (pLTA) and Staphylococcus aureus (aLTA) on PAFR expression in THP-1,...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1403.03012

    authors: Kim H,Jung BJ,Jeong J,Chun H,Chung DK

    更新日期:2014-08-01 00:00:00

  • Effect of gcl, glcB and aceA disruption on glyoxylate conversion by Pseudomonas putida JM37.

    abstract::Pseudomonas putida JM 37 metabolized glyoxylate at a specific rate of 55 g/g dry biomass/day. In order to investigate their role, three genes encoding enzymes that potentially convert glyoxylate were disrupted, namely tartronate semialdehyde synthase (gcl), malate synthase (glcB) and isocitrate lyase (aceA). Strains w...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0912.12005

    authors: Li XZ,Klebensberger J,Rosche B

    更新日期:2010-06-01 00:00:00

  • Heme Derived from Corynebacterium glutamicum: A Potential Iron Additive for Swine and an Electron Carrier Additive for Lactic Acid Bacterial Culture.

    abstract::To investigate the potential applications of bacterial heme, aminolevulinic acid synthase (HemA) was expressed in a Corynebacterium glutamicum HA strain that had been adaptively evolved against oxidative stress. The red pigment from the constructed strain was extracted and it exhibited the typical heme absorbance at 4...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1611.11010

    authors: Choi SI,Park J,Kim P

    更新日期:2017-03-28 00:00:00

  • Surface-Displayed Porcine IFN-λ3 in Lactobacillus plantarum Inhibits Porcine Enteric Coronavirus Infection of Porcine Intestinal Epithelial Cells.

    abstract::Interferon (IFN)-λ plays an essential role in mucosal cells which exhibit strong antiviral activity. Lactobacillus plantarum (L. plantarum) has substantial application potential in the food and medical industries because of its probiotic properties. Alphacoronaviruses, especially porcine epidemic diarrhea virus (PEDV)...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1909.09041

    authors: Liu YS,Liu Q,Jiang YL,Yang WT,Huang HB,Shi CW,Yang GL,Wang CF

    更新日期:2020-04-28 00:00:00

  • Restoration of Traditional Korean Nuruk and Analysis of the Brewing Characteristics.

    abstract::In this study, a total of 58 different kinds of nuruk (a traditional Korean fermentation starter) were prepared, including 46 kinds of restored nuruk from ancient documents. Each nuruk was evaluated by analysis of its saccharification power, and the enzyme activities of glucoamylase, α-amylase, β-amylase, protease, an...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1610.10039

    authors: Lee JE,Lee AR,Kim H,Lee E,Kim TW,Shin WC,Kim JH

    更新日期:2017-05-28 00:00:00

  • Proteomic identification and characterization of Vibrio vulnificus proteins induced upon exposure to INT-407 intestinal epithelial cells.

    abstract::Proteomic analysis led to identification of the proteins of Vibrio vulnificus that were induced upon exposure to INT-407 cells, and 7 of which belong to the functional categories such as amino acid transport/metabolism, nucleotide transport/metabolism, posttranslational modification/protein turnover/chaperones, and tr...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Oh MH,Jeong HG,Choi SH

    更新日期:2008-05-01 00:00:00

  • Algorithm for predicting functionally equivalent proteins from BLAST and HMMER searches.

    abstract::In order to predict biologically significant attributes such as function from protein sequences, searching against large databases for homologous proteins is a common practice. In particular, BLAST and HMMER are widely used in a variety of biological fields. However, sequencehomologous proteins determined by BLAST and...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1203.03050

    authors: Yu DS,Lee DH,Kim SK,Lee CH,Song JY,Kong EB,Kim JF

    更新日期:2012-08-01 00:00:00

  • Development of a protein secretion system with the application of sec-dependent protein secretion components.

    abstract::In order to induce high levels of protein secretion, we have constructed a recombinant plasmid, designated pBP244, into which was incorporated key components of the type-II Sec-dependent secretion system, including LepB (signal peptidase), SecA (ATPase), and SecB (chaperone). The biological activities of the LepB, Sec...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Kim SW,Kim YH,Yoo AY,Yu JE,Hur J,Lee JH,Cha J,Kang HY

    更新日期:2007-08-01 00:00:00

  • Hydoroxyhibiscone A, a novel human neutrophil elastase inhibitor from Hibiscus syriacus.

    abstract::In an ongoing investigation of compounds from natural products that exhibit anti-aging properties, hydroxyhibiscone A (1), a new furanosesquiterpenoid, together with hibiscone D (2), was isolated from the root bark of Hibiscus syriacus. Utilizing UV, IR, NMR, and MS spectroscopic analyses, these chemical structures we...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1004.04028

    authors: Ryoo IJ,Yun BS,Lee IK,Kim YH,Lee IS,Ahn JS,Bae K,Yoo ID

    更新日期:2010-08-01 00:00:00

  • Characterization of Dye Decolorization in Cell-Free Culture Broth of Trametes versicolor CBR43.

    abstract::The dye decolorization rate in a cell-free culture broth of the white-rot fungus Trametes versicolor CBR43 was studied, including the effects of inhibitors of NaCl, Zn(II), and Cd(II) on dye decolorization activity. The maximum rates of dye decolorization in cell-free culture broth were 1,410, 44.7, 41.2, and 0.19 μmo...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1608.08008

    authors: Ryu H,Ryu HW,Cho KS

    更新日期:2017-01-28 00:00:00

  • Optimal Temperature and Light Intensity for Improved Mixotrophic Metabolism of Chlorella sorokiniana Treating Livestock Wastewater.

    abstract::Mixotrophic microalgal growth gives a great premise for wastewater treatment based on photoautotrophic nutrient utilization and heterotrophic organic removal while producing renewable biomass. There remains a need for a control strategy to enrich them in a photobioreactor. This study performed a series of batch experi...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1707.07007

    authors: Lee TH,Jang JK,Kim HW

    更新日期:2017-11-28 00:00:00

  • Selection of High Laccase-Producing Coriolopsis gallica Strain T906: Mutation Breeding, Strain Characterization, and Features of the Extracellular Laccases.

    abstract::Commercial application of laccase is often hampered by insufficient enzyme stocks, with very low yields obtained from natural sources. This study aimed to improve laccase production by mutation of a Coriolopsis gallica strain and to determine the biological properties of the mutant. The high-yield laccase strain C. ga...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1604.04011

    authors: Xu X,Feng L,Han Z,Luo S,Wu A,Xie J

    更新日期:2016-09-28 00:00:00

  • Genetic and phenotypic diversity of carbofuran-degrading bacteria isolated from agricultural soils.

    abstract::Thirty-seven carbofuran-degrading bacteria were isolated from agricultural soils, and their genetic and phenotypic characteristics were investigated. The isolates were able to utilize carbofuran as a sole source of carbon and energy. Analysis of the 16S rRNA gene sequence indicated that the isolates were related to me...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1108.08087

    authors: Shin DH,Kim DU,Seong CN,Song HG,Ka JO

    更新日期:2012-04-01 00:00:00

  • Apoptosis of human hepatocarcinoma (HepG2) and neuroblastoma (SKN-SH) cells induced by polysaccharides-peptide complexes produced by submerged mycelial culture of an entomopathogenic fungus Cordyceps sphecocephala.

    abstract::Three different polysaccharide-peptide complexes (PPC, named as Fr-I, Fr-II, and Fr-III) were produced by submerged mycelial culture of an entomopathogenic fungus Cordyceps sphecocephala, and their anticancer activities were investigated in human hepatocarcinoma (HepG2) and neuroblastoma (SK-N-SH) cells. The highest i...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Oh JY,Baek YM,Kim SW,Hwang HJ,Hwang HS,Lee SH,Yun JW

    更新日期:2008-03-01 00:00:00

  • Exploring the effects of carbon sources on the metabolic capacity for shikimic acid production in Escherichia coli using in silico metabolic predictions.

    abstract::Effects of various industrially important carbon sources (glucose, sucrose, xylose, gluconate, and glycerol) on shikimic acid (SA) biosynthesis in Escherichia coli were investigated to gain new insight into the metabolic capability for overproducing SA. At the outset, constraints-based flux analysis using the genome-s...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Ahn JO,Lee HW,Saha R,Park MS,Jung JK,Lee DY

    更新日期:2008-11-01 00:00:00

  • Rehmannia glutinosa ameliorates scopolamine-induced learning and memory impairment in rats.

    abstract::Many studies have shown that the steamed root of Rehmannia glutinosa (SRG), which is widely used in the treatment of various neurodegenerative diseases in the context of Korean traditional medicine, is effective for improving cognitive and memory impairments. The purpose of this study was to examine whether SRG extrac...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1104.04012

    authors: Lee B,Shim I,Lee H,Hahm DH

    更新日期:2011-08-01 00:00:00

  • Emodin Successfully Inhibited Invasion of Brucella abortus Via Modulting Adherence, Microtubule Dynamics and ERK Signaling Pathway in RAW 264.7 Cells.

    abstract::The aim of this work is to investigate the protective efficacy of emodin, an active, naturally-occurring anthraquinone derivative of several traditional Chinese herbs, against Brucella abortus infection in macrophages. Brucella were incubated with different concentrations of emodin and showed that bacterial survival r...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1804.04040

    authors: Huy TXN,Reyes AWB,Hop HT,Arayan LT,Son VH,Min W,Lee HJ,Kim S

    更新日期:2018-10-28 00:00:00

  • Nematicidal and Plant Growth-Promoting Activity of Enterobacter asburiae HK169: Genome Analysis Provides Insight into Its Biological Activities.

    abstract::In the course of screening for microbes with nematicidal activity, we found that Enterobacter asburiae HK169 displayed promising nematicidal activity against the root-knot nematode Meloidogyne incognita, along with plant growth-promoting properties. Soil drenching of a culture of HK169 reduced gall formation by 66% wh...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1801.01021

    authors: Oh M,Han JW,Lee C,Choi GJ,Kim H

    更新日期:2018-06-28 00:00:00

  • Bioethanol production from the hydrolysate of rape stem in a surface-aerated fermentor.

    abstract::In this study, we investigated the feasibility of producing bioethanol from the hydrolysate of rape stem. Specifically, the most ideal yeast strain was screened, and the microaeration was performed by surface aeration on a liquid medium surface. Among the yeast strains examined, Pichia stipitis CBS 7126 displayed the ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1008.08001

    authors: Yeon JH,Lee SE,Choi WY,Choi WS,Kim IC,Lee HY,Jung KH

    更新日期:2011-01-01 00:00:00

  • Comparison of traditional and commercial vinegars based on metabolite profiling and antioxidant activity.

    abstract::Metabolite profiles of seven commercial vinegars and two traditional vinegars were performed by gas chromatography time-of-flight mass spectrometry with multivariate statistical analysis. During alcohol fermentation, yeast, nuruk, and koji were used as sugars for nutrients and as fermentation substrates. Commercial an...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1408.08021

    authors: Jang YK,Lee MY,Kim HY,Lee S,Yeo SH,Baek SY,Lee CH

    更新日期:2015-02-01 00:00:00

  • Reaction pattern of Bacillus cereus D-11 chitosanase on chitooligosaccharide alcohols.

    abstract::The purified endochitosanase (Mw 41 kDa) from bacterium Bacillus cereus D-11 hydrolyzed chitooligomers (GlcN)5-7 into chitobiose, chitotriose, and chitotetraose as the final products. The minimal size of the oligosaccharides for enzymatic hydrolysis was a pentamer. To further investigate the cleavage pattern of this e...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0805.306

    authors: Gao XA,Jung WJ,Kuk JH,Park RD

    更新日期:2009-04-01 00:00:00

  • Simultaneous detection and identification of Bacillus cereus group bacteria using multiplex PCR.

    abstract::Bacillus cereus group bacteria share a significant degree of genetic similarity. Thus, to differentiate and identify the Bacillus cereus group efficiently, a multiplex PCR method using the gyrB and groEL genes as diagnostic markers is suggested for simultaneous detection. The assay yielded a 400 bp amplicon for the gr...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Park SH,Kim HJ,Kim JH,Kim TW,Kim HY

    更新日期:2007-07-01 00:00:00

  • Optimal Fermentation Conditions of Hyaluronidase Inhibition Activity on Asparagus cochinchinensis Merrill by Weissella cibaria.

    abstract::This study was conducted to evaluate the hyaluronidase (HAase) inhibition activity of Asparagus cochinchinesis (AC) extracts following fermentation by Weissella cibaria through response surface methodology. To optimize the HAase inhibition activity, a central composite design was introduced based on four variables: th...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1611.11051

    authors: Kim M,Kim WB,Koo KY,Kim BR,Kim D,Lee S,Son HJ,Hwang DY,Kim DS,Lee CY,Lee H

    更新日期:2017-04-28 00:00:00

  • Metabolic Engineering for Improved Fermentation of L-Arabinose.

    abstract::L-Arabinose, a five carbon sugar, has not been considered as an important bioresource because most studies have focused on D-xylose, another type of five-carbon sugar that is prevalent as a monomeric structure of hemicellulose. In fact, L-arabinose is also an important monomer of hemicellulose, but its content is much...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.4014/jmb.1812.12015

    authors: Ye S,Kim JW,Kim SR

    更新日期:2019-03-28 00:00:00

  • Comparative study of rhizobacterial community structure of plant species in oil-contaminated soil.

    abstract::In this study, the identity and distribution of plants and the structure of their associated rhizobacterial communities were examined in an oil-contaminated site. The number of plant species that formed a community or were scattered was 24. The species living in soil highly contaminated with total petroleum hydrocarbo...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1003.03022

    authors: Lee EH,Cho KS,Kim J

    更新日期:2010-09-01 00:00:00

  • Immobilization and characterization of tannase from a metagenomic library and its use for removal of tannins from green tea infusion.

    abstract::Tannase (Tan410) from a soil metagenomic library was immobilized on different supports, including mesoporous silica SBA-15, chitosan, calcium alginate, and amberlite IRC 50. Entrapment in calcium alginate beads was comparatively found to be the best method and was further characterized. The optimum pH of the immobiliz...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1308.08047

    authors: Yao J,Chen Q,Zhong G,Cao W,Yu A,Liu Y

    更新日期:2014-01-01 00:00:00

  • Elucidation of multifaceted evolutionary processes of microorganisms by comparative genome-based analysis.

    abstract::The evolution of living organisms occurs via a combination of highly complicated processes that involve modification of various features such as appearance, metabolism and sensing systems. To understand the evolution of life, it is necessary to understand how each biological feature has been optimized in response to n...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0905.05017

    authors: Nguyen TV,Hong SH,Lee SY

    更新日期:2009-11-01 00:00:00