Comparative study of rhizobacterial community structure of plant species in oil-contaminated soil.

Abstract:

:In this study, the identity and distribution of plants and the structure of their associated rhizobacterial communities were examined in an oil-contaminated site. The number of plant species that formed a community or were scattered was 24. The species living in soil highly contaminated with total petroleum hydrocarbon (TPH) (9,000-4,5000 mg/g-soil) were Cynodon dactylon, Persicaria lapathifolia, and Calystegia soldanella (a halophytic species). Among the 24 plant species, the following have been known to be effective for oil removal: C. dactylon, Digitaria sanguinalis, and Cyperus orthostachyus. Denaturing gradient gel electrophoresis (DGGE) profile analysis showed that the following pairs of plant species had highly similar (above 70%) rhizobacterial community structures: Artemisia princeps and Hemistepta lyrata; C. dactylon and P. lapathifolia; Carex kobomugi and Cardamine flexuosa; and Equisetum arvense and D. sanguinalis. The major groups of rhizobacteria were Betaproteobacteria, Gamma-proteobacteria, Chloroflexi, Actinobacteria, and unknown. Based on DGGE analysis, P. lapathifolia, found for the first time in this study growing in the presence of high TPH, may be a good species for phytoremediation of oil-contaminated soils and in particular, C. soldanella may be useful for soils with high TPH and salt concentrations. Overall, this study suggests that the plant roots, regardless of plant species, may have a similar influence on the bacterial community structure in oil-contaminated soil.

journal_name

J Microbiol Biotechnol

authors

Lee EH,Cho KS,Kim J

doi

10.4014/jmb.1003.03022

subject

Has Abstract

pub_date

2010-09-01 00:00:00

pages

1339-47

issue

9

eissn

1017-7825

issn

1738-8872

pii

JMB020-09-12

journal_volume

20

pub_type

杂志文章
  • Higher biomass productivity of microalgae in an attached growth system, using wastewater.

    abstract::Although most algae cultivation systems are operated in suspended culture, an attached growth system can offer several advantages over suspended systems. Algal cultivation becomes light-limited as the microalgal concentration increases in the suspended system; on the other hand, sunlight penetrates deeper and stronger...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1406.06057

    authors: Lee SH,Oh HM,Jo BH,Lee SA,Shin SY,Kim HS,Lee SH,Ahn CY

    更新日期:2014-11-28 00:00:00

  • Agricultural fertilizers as economical alternative for cultivation of Haematococcus pluvialis.

    abstract::A Haematococcus pluvialis strain isolated from the ruins of Ephesus in Turkey was investigated as regards its adaptation to laboratory conditions and maximum growth rate. In the first stage of the experiment, the growth of H. pluvialis was compared in common culture media. Furthermore, in an effort to minimize the cul...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Dalay MC,Imamoglu E,Demirel Z

    更新日期:2007-03-01 00:00:00

  • Lipoteichoic Acid Isolated from Staphylococcus aureus Induces Both Epithelial-Mesenchymal Transition and Wound Healing in HaCaT Cells.

    abstract::Lipoteichoic acid (LTA), a cell wall component of gram-positive bacteria, is recognized by Toll-like receptor 2, expressed on certain mammalian cell surfaces, initiating signaling cascades that include nuclear factor kappa-light-chain-enhancer of activated B cells (NF-κB) and mitogen-activated protein kinase. There ar...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1703.03068

    authors: Kim S,Kim HE,Kang B,Lee YW,Kim H,Chung DK

    更新日期:2017-10-28 00:00:00

  • Characterization of Bacillus polyfermenticus KJS-2 as a probiotic.

    abstract::The identification and characterization of Bacillus polyfermenticus KJS-2 (B. polyfermenticus KJS-2) was conducted using TEM, an API 50CHB kit, 16S rDNA sequencing, a phylogenetic tree, and catalase and oxidase testing. The conversion rate of glucose to lactic acid by B. polyfermenticus KJS-2 was found to be 60.71+/-4...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0903.113

    authors: Kim KM,Kim MJ,Kim DH,Park YS,Kang JS

    更新日期:2009-09-01 00:00:00

  • Effect of culture conditions and signal peptide on production of human recombinant N-acetylgalactosamine-6-sulfate sulfatase in Escherichia coli BL21.

    abstract::The production and characterization of an active recombinant N-acetylgalactosamine-6-sulfate sulfatase (GALNS) in Escherichia coli BL21(DE3) has been previously reported. In this study, the effect of the signal peptide (SP), inducer concentration, process scale, and operational mode (batch and semi-continuous) on GALN...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1211.11044

    authors: Hernández A,Velásquez O,Leonardi F,Soto C,Rodríguez A,Lizaraso L,Mosquera Á,Bohórquez J,Coronado A,Espejo Á,Sierra R,Sánchez OF,Alméciga-Díaz CJ,Barrera LA

    更新日期:2013-05-01 00:00:00

  • Development of predictive mathematical model for the growth kinetics of Staphylococcus aureus by response surface model.

    abstract::A response surface model was developed for predicting the growth rates of Staphylococcus aureus in tryptic soy broth (TSB) medium as a function of combined effects of temperature, pH, and NaCl. The TSB containing six different concentrations of NaCl (0, 2, 4, 6, 8, and 10%) was adjusted to an initial of six different ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Seo KY,Heo SK,Lee C,Chung DH,Kim MG,Lee KH,Kim KS,Bahk GJ,Bae DH,Kim KY,Kims CH,Ha SD

    更新日期:2007-09-01 00:00:00

  • Naringenin exerts cytoprotective effect against paraquat-induced toxicity in human bronchial epithelial BEAS-2B cells through NRF2 activation.

    abstract:UNLABELLED:We have previously shown that paraquat (PQ)-induced oxidative stress causes dramatic damage in various human cell lines. Naringenin (NG) is an active flavanone, which has been reported to have beneficial bioactivities, including antioxidative, anti-inflammatory, and antitumorigenic activities, with a relativ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1402.02001

    authors: Podder B,Song HY,Kim YS

    更新日期:2014-05-01 00:00:00

  • An antiproliferative ribonuclease from fruiting bodies of the wild mushroom Russula delica.

    abstract::An antiproliferative ribonuclease with a new N-terminal sequence was purified from fruiting bodies of the edible wild mushroom Russula delica in this study. This novel ribonuclease was unadsorbed on DEAE-cellulose, but absorbed on SP-Sepharose and Q-Sepharose. It had a molecular mass of 14 kDa as judged by fast protei...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0911.11022

    authors: Zhao S,Zhao Y,Li S,Zhang G,Wang H,Ng TB

    更新日期:2010-04-01 00:00:00

  • Isolation and Evaluation of Bacillus Strains for Industrial Production of 2,3-Butanediol.

    abstract::Biologically produced 2,3-butanediol (2,3-BDO) has diverse industrial applications. In this study, schematic isolation and screening procedures were designed to obtain generally regarded as safe (GRAS) and efficient 2,3-BDO producers. Over 4,000 candidate strains were isolated by pretreatment and enrichment, and the i...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1710.10038

    authors: Song CW,Rathnasingh C,Park JM,Lee J,Song H

    更新日期:2018-03-28 00:00:00

  • Effects of silkworm hemolymph on cell viability and hCTLA4Ig production in transgenic rice cell suspension cultures.

    abstract::Silkworm hemolymph (SH), prepared from fifth-instar larvae of Bombyx mori and heat-treated at 60 degrees C for 30 min, was used to improve cell viability and the production of human cytotoxic T-lymphocyte antigen 4-immunoglobulin (hCTLA4Ig) in transgenic Oryza sativa L. cell suspension cultures. Even though SH could n...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Cheon SH,Lee KH,Kwon JY,Ryu HN,Yu DH,Choi YS,Kim DI

    更新日期:2007-12-01 00:00:00

  • A Synergy Effect of Trisodium Phosphate and Ethanol on Inactivation of Murine Norovirus 1 on Lettuce and Bell Pepper.

    abstract::The synergy effect of trisodium phosphate (TSP) and ethanol against murine norovirus 1 (MNV-1), as a surrogate for human noroviruses, on fresh produces was evaluated. More than 2% (w/v) of TSP effectively inactivated MNV-1. The single treatment of 1% TSP or 30% ethanol for 30 min was not effective on MNV-1; however, c...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1503.03032

    authors: Kim EJ,Lee YD,Kim KY,Park JH

    更新日期:2015-12-28 00:00:00

  • Identification of a Gene Involved in the Negative Regulation of Pyomelanin Production in Ralstonia solanacearum.

    abstract::Ralstonia solanacearum causes bacterial wilt in a wide variety of host plant species and produces a melanin-like blackish-brown pigment in stationary phase when grown in minimal medium supplemented with tyrosine. To study melanin production regulation in R. solanacearum, five mutants exhibiting overproduction of melan...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1705.05049

    authors: Ahmad S,Lee SY,Khan R,Kong HG,Son GJ,Roy N,Choi K,Lee SW

    更新日期:2017-09-28 00:00:00

  • Nitric Oxide Inhibition and Procollagen Type I Peptide Synthesis Activities of a Phenolic Amide Identified from the Stem of Lycium chinense Miller.

    abstract::The bioactivities of boxthron fruits, a source of oriental medicine, are well known, whereas phytochemical studies of the boxthorn stem are rare. In this study, the stem extract of boxthorn (Lycium chinense Miller) and its subfractions were evaluated for their effects on nitric oxide (NO) inhibition and procollagen ty...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1702.02004

    authors: Gil CS,Chang MS,Eom SH

    更新日期:2017-08-28 00:00:00

  • Homology modeling and docking studies of Streptomyces peucetius CYP147F1 as limonene hydroxylase.

    abstract::Homology modeling of Streptomyces peucetius CYP147F1 was constructed using three cytochrome P450 structures, CYP107L1, CYPVdh, and CYPeryF, as templates. The lowest energy SPCYP147F1 model was then assessed for stereochemical quality and side-chain environment by Accelrys Discovery Studio 3.1 software. Further actives...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1112.12053

    authors: Bhattarai S,Liou K,Oh TJ

    更新日期:2012-07-01 00:00:00

  • Evaluation of a pretreatment method for two-dimensional gel electrophoresis of synovial fluid using cartilage oligomeric matrix protein as a marker.

    abstract::Osteoarthritis (OA) is the most common rheumatic pathology. One of the major objectives of OA research is the development of early diagnostic strategies such as those using proteomic technology. Synovial fluid (SF) in OA patients is a potential source of biomarkers for OA. The efficient and reliable preparation of SF ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1111.11005

    authors: Kong MK,Min BH,Lee PC

    更新日期:2012-05-01 00:00:00

  • Molecular characterization of a novel vegetative insecticidal protein from Bacillus thuringiensis effective against sap-sucking insect pest.

    abstract::Several isolates of Bacillus thuringiensis (Bt) were screened for the vegetative insecticidal protein (Vip) effective against sap-sucking insect pests. Screening results were based on LC(50) values against cotton aphid (Aphis gossypii), one of the dangerous pests of various crop plants including cotton. Among the isol...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1105.05030

    authors: Sattar S,Maiti MK

    更新日期:2011-09-01 00:00:00

  • Morphology and adhesion of Campylobacter jejuni to chicken skin under varying conditions.

    abstract::The adhesion of Campylobacter jejuni to chicken skin, along with the associated morphological changes under aerobic conditions at 4, 25, and 37 degrees C and microaerobic (O2 5%, CO2 10%, N2 85%) conditions, were investigated using confocal laser scanning microscopy (CLSM), flow cytometry, and plate counting. The morp...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Jang KI,Kim MG,Ha SD,Kim KS,Lee KH,Chung DH,Kim CH,Kim KY

    更新日期:2007-02-01 00:00:00

  • Development of an in vitro test system measuring transcriptional downregulatory activities on IL-13.

    abstract::Interleukin-13 (IL-13) has been proposed as a therapeutic target for bronchial asthma as it plays crucial roles in the pathogenesis of the disease. We developed an in vitro test system measuring transcriptional downregulatory activities on IL-13 as a primary screening method to select drug candidates from natural prod...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Choi JJ,Park BK,Park S,Yun CY,Kim DH,Kim JS,Hwang ES,Jin M

    更新日期:2009-03-01 00:00:00

  • Impact of Breed on the Fecal Microbiome of Dogs under the Same Dietary Condition.

    abstract::The gut microbiome influences the health and well-being of dogs. However, little is known about the impact of breed on the fecal microbiome composition in dogs. Therefore, we aimed to investigate the differences in the fecal microbiome in three breeds of dog fed and housed under the same conditions, namely eight Malte...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1906.06048

    authors: Reddy KE,Kim HR,Jeong JY,So KM,Lee S,Ji SY,Kim M,Lee HJ,Lee S,Kim KH,Kim M

    更新日期:2019-12-28 00:00:00

  • New fermentation technique for complete digestion of soybean protein.

    abstract::The aim of this study was to develop a new fermentation method in order to improve the digestion of soybean protein, and to promote normal fermentation of soybean. A proximate composition, such as moisture, pH, and reducing sugar, of fermented soybeans by the new fermentation was similar to those of controls. Neutral ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Lee JO,Park MH,Choi YH,Ha YL,Ryu CH

    更新日期:2007-11-01 00:00:00

  • Quantitative Analysis of Milk-Derived microRNAs and Microbiota during the Manufacturing and Ripening of Soft Cheese.

    abstract::MicroRNAs (miRNAs) are abundant in bovine milk and milk derived from other livestock, and they have functional roles in infants and in the secretion process of mammary glands. However, few studies have evaluated miRNAs in dairy processes, such as during cheese making and ripening. Thus, we investigated the characteris...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1705.05006

    authors: Oh S,Park MR,Ryu S,Maburutse B,Kim JU,Kim Y

    更新日期:2017-09-28 00:00:00

  • A Laboratory-Scale Study of the Applicability of a Halophilic Sediment Bioelectrochemical System for in situ Reclamation of Water and Sediment in Brackish Aquaculture Ponds: Establishment, Bacterial Community and Performance Evaluation.

    abstract::In this study, we investigated the potential of using sediment bioelectrochemical systems (SBESs) for in situ treatment of the water and sediment in brackish aquaculture ponds polluted with uneaten feed. An SBES integrated into a laboratory-scale tank simulating a brackish aquaculture pond was established. This test t...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1905.05043

    authors: Pham HT,Tran HT,Vu LT,Dang HT,Nguyen TTT,Dang THT,Nguyen MTT,Nguyen HQ,Kim BH

    更新日期:2019-07-28 00:00:00

  • A preparative purification process for recombinant hepatitis B core antigen using online capture by expanded bed adsorption followed by size-exclusion chromatography.

    abstract::Hepatitis B core antigen (HBcAg) is an important serological marker used in the diagnosis of hepatitis B virus (HBV) infections. In the current study, a fast and efficient preparative purification protocol for truncated HBcAg from Escherichia coli disruptate was developed. The recombinant HBcAg was first captured by a...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0804.254

    authors: Ho CW,Tan WS,Chong FC,Ling TC,Tey BT

    更新日期:2009-04-01 00:00:00

  • Purification and Identification of Antioxidant Peptides from Enzymatic Hydrolysate of Spirulina platensis.

    abstract::The aim of this study was to isolate antioxidant peptides from an enzymatic hydrolysate of Spirulina platensis. A novel antioxidant peptide was obtained by ultrafiltration, gel filtration chromatography, and reverse-phase high-performance liquid chromatography, with the 1,1-diphenyl-2-picrylhydrazyl (DPPH) radical sca...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1601.01033

    authors: Yu J,Hu Y,Xue M,Dun Y,Li S,Peng N,Liang Y,Zhao S

    更新日期:2016-07-28 00:00:00

  • Effect of different biosynthetic precursors on the production of nargenicin A1 from metabolically engineered Nocardia sp. CS682.

    abstract::Nargenicin A1 is a 28-membered polyketide macrolide, with antibacterial activity against methicillin-resistant Staphylococcus aureus, produced by Nocardia sp. CS682. In this study, the production of nargenicin A1 was improved by enhancing the supply of different biosynthetic precursors. In Nocardia sp. CS682 (KCTC1129...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1202.02027

    authors: Koju D,Maharjan S,Dhakal D,Yoo JC,Sohng JK

    更新日期:2012-08-01 00:00:00

  • Algicidal activity of a dibenzofuran-degrader Rhodococcus sp.

    abstract::Rhodococcus sp. strain p52, a previously isolated dibenzofuran degrader, could effectively inhibit the growth of cyanobacteria, including species of Microcystis, Anabaena, and Nodularia. When strain p52 was inoculated at the concentration of 7.7×10(7) CFU/ml, 93.5% of exponentially growing Microcystis aeruginosa (7.3×...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1208.08018

    authors: Wang MH,Peng P,Liu YM,Jia RB,Li L

    更新日期:2013-02-01 00:00:00

  • Nonstructural protein of severe fever with thrombocytopenia syndrome phlebovirus inhibits TBK1 to evade interferon-mediated response.

    abstract::Severe fever with thrombocytopenia syndrome virus (SFTSV) is an emerging phlebovirus of the Phenuiviridae family that has been circulating in East Asian countries, such as China, Japan, and South Korea. Despite the increasing infection rates and relatively high mortality rate, there is limited information available re...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2008.08048

    authors: Lee JK,Shin OS

    更新日期:2020-12-31 00:00:00

  • Expression, purification, and characterization of C-terminal amidated glucagon in Streptomyces lividans.

    abstract::Glucagon, a peptide hormone produced by alpha-cells of Langerhans islets, is a physiological antagonist of insulin and stimulator of its secretion. In order to improve its bioactivity, we modified its structure at the C-terminus by amidation catalyzed by a recombinant amidase in bacterial cells. The human gene coding ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Qi X,Jiang R,Yao C,Zhang R,Li Y

    更新日期:2008-06-01 00:00:00

  • Paenibacillus donghaensis sp. nov., a xylan-degrading and nitrogen-fixing bacterium isolated from East Sea sediment.

    abstract::A Gram-positive and endospore-forming strain, JH8T, was isolated from deep-sea sediment and identified as a member of the genus Paenibacillus on the basis of 16S rRNA gene sequence and phenotypic analyses. According to a phylogenetic analysis, the most closely related species was Paenibacillus wynnii LMG 22176T (96.9%...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Choi JH,Im WT,Yoo JS,Lee SM,Moon DS,Kim HJ,Rhee SK,Roh DH

    更新日期:2008-02-01 00:00:00

  • Effects of N-/C-Terminal Extra Tags on the Optimal Reaction Conditions, Activity, and Quaternary Structure of Bacillus thuringiensis Glucose 1-Dehydrogenase.

    abstract::Glucose dehydrogenase (GDH) is an oxidoreductase enzyme and is used as a biocatalyst to regenerate NAD(P)H in reductase-mediated chiral synthesis reactions. In this study, the glucose 1-dehydrogenase B gene (gdhB) was cloned from Bacillus thuringiensis subsp. kurstaki, and wild-type (GDH-BTWT) and His-tagged (GDH-BTN-...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1603.03021

    authors: Hyun J,Abigail M,Choo JW,Ryu J,Kim HK

    更新日期:2016-10-28 00:00:00