Abstract:
:Recent studies have shown that lysines can be posttranslationally modified by various types of acylations. However, except for acetylation, very little is known about their scope and cellular distribution. We mapped thousands of succinylation sites in bacteria (E. coli), yeast (S. cerevisiae), human (HeLa) cells, and mouse liver tissue, demonstrating widespread succinylation in diverse organisms. A majority of succinylation sites in bacteria, yeast, and mouse liver were acetylated at the same position. Quantitative analysis of succinylation in yeast showed that succinylation was globally altered by growth conditions and mutations that affected succinyl-coenzyme A (succinyl-CoA) metabolism in the tricarboxylic acid cycle, indicating that succinylation levels are globally affected by succinyl-CoA concentration. We preferentially detected succinylation on abundant proteins, suggesting that succinylation occurs at a low level and that many succinylation sites remain unidentified. These data provide a systems-wide view of succinylation and its dynamic regulation and show its extensive overlap with acetylation.
journal_name
Cell Repjournal_title
Cell reportsauthors
Weinert BT,Schölz C,Wagner SA,Iesmantavicius V,Su D,Daniel JA,Choudhary Cdoi
10.1016/j.celrep.2013.07.024subject
Has Abstractpub_date
2013-08-29 00:00:00pages
842-51issue
4issn
2211-1247pii
S2211-1247(13)00386-0journal_volume
4pub_type
杂志文章相关文献
Cell Reports文献大全abstract::The brain is a major site of relapse for several cancers, yet deciphering the mechanisms of brain metastasis remains a challenge because of the complexity of the brain tumor microenvironment (TME). To define the molecular landscape of brain metastasis from intact tissue in vivo, we employ an RNA-sequencing-based appro...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2019.03.085
更新日期:2019-04-23 00:00:00
abstract::Exposure to low-dose irradiation causes transiently elevated expression of the long ncRNA PARTICLE (gene PARTICLE, promoter of MAT2A-antisense radiation-induced circulating lncRNA). PARTICLE affords both a cytosolic scaffold for the tumor suppressor methionine adenosyltransferase (MAT2A) and a nuclear genetic platform...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2015.03.043
更新日期:2015-04-21 00:00:00
abstract::The guardian of the genome, p53, is often mutated in cancer and may contribute to therapeutic resistance. Given that p53 is intact and functional in normal tissues, we harnessed its potential to inhibit the growth of p53-deficient cancer cells. Specific activation of p53 in normal fibroblasts selectively induced apopt...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2013.12.020
更新日期:2014-01-30 00:00:00
abstract::The innate immune system senses cytosolic dsDNA and bacterial cyclic dinucleotides and initiates signaling via the adaptor STING to induce type 1 interferon (IFN) response. We demonstrate here that BTK-deficient cells have impaired IFN-β production and TBK1/IRF3 activation when stimulated with agonists or infected wit...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2015.01.039
更新日期:2015-02-24 00:00:00
abstract::Studies in vertebrates have outlined conserved molecular control of definitive endoderm (END) development. However, recent work also shows that key molecular aspects of human END regulation differ even from rodents. Differentiation of human embryonic stem cells (ESCs) to END offers a tractable system to study the mole...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2019.03.076
更新日期:2019-04-16 00:00:00
abstract::Oligodendrogenesis occurs during early postnatal development, coincident with neurogenesis and synaptogenesis, raising the possibility that microglia-dependent pruning mechanisms that modulate neurons regulate myelin sheath formation. Here we show a population of ameboid microglia migrating from the ventricular zone i...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.108047
更新日期:2020-08-18 00:00:00
abstract::The recent success of derivation of mammalian haploid embryonic stem cells (haESCs) has provided a powerful tool for large-scale functional analysis of the mammalian genome. However, haESCs rapidly become diploidized after differentiation, posing challenges for genetic analysis. Here, we show that the spontaneous dipl...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2017.07.081
更新日期:2017-08-29 00:00:00
abstract::Genetic and clinical association studies have identified disrupted in schizophrenia 1 (DISC1) as a candidate risk gene for major mental illness. DISC1 is interrupted by a balanced chr(1;11) translocation in a Scottish family in which the translocation predisposes to psychiatric disorders. We investigate the consequenc...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2015.07.061
更新日期:2015-09-01 00:00:00
abstract::Oct4 is an essential regulator of pluripotency in vivo and in vitro in embryonic stem cells, as well as a key mediator of the reprogramming of somatic cells into induced pluripotent stem cells. It is not known whether activation and/or repression of specific genes by Oct4 is relevant to these functions. Here, we show ...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2011.12.002
更新日期:2012-02-23 00:00:00
abstract::In the presynaptic terminal, the magnitude and location of Ca2+ entry through voltage-gated Ca2+ channels (VGCCs) regulate the efficacy of neurotransmitter release. However, how presynaptic active zone proteins control mammalian VGCC levels and organization is unclear. To address this, we deleted the CAST/ELKS protein...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2018.06.024
更新日期:2018-07-10 00:00:00
abstract::Investigating mechanisms that regulate endothelial cell (EC) growth and survival is important for understanding EC homeostasis and how ECs maintain stem cell niches. We report here that targeted loss of Id genes in adult ECs results in dilated, leaky sinusoids and a pro-inflammatory state that increases in severity ov...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.107572
更新日期:2020-04-28 00:00:00
abstract::The histone lysine demethylase KDM4C is often overexpressed in cancers primarily through gene amplification. The molecular mechanisms of KDM4C action in tumorigenesis are not well defined. Here, we report that KDM4C transcriptionally activates amino acid biosynthesis and transport, leading to a significant increase in...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2015.12.053
更新日期:2016-01-26 00:00:00
abstract::The timing of food intake and nutrient utilization is critical to health and regulated partly by the circadian clock. Increased amplitude of circadian oscillations and metabolic output has been found to improve health in diabetic and obesity mouse models. Here, we report a function for the circadian deadenylase Noctur...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2018.01.011
更新日期:2018-01-30 00:00:00
abstract::Attempts to generate functional blood cells from human pluripotent stem cells (hPSCs) remain largely unsuccessful, mainly due to the lack of understanding of the regulatory network of human hematopoiesis. In this study, we identified leucine-rich-repeat-containing G-protein-coupled receptor 4 (LGR4) as an essential re...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.107600
更新日期:2020-05-05 00:00:00
abstract::The interaction between oxysterols and the G protein-coupled receptor Epstein-Barr virus-induced gene 2 (EBI2) fine-tunes immune cell migration, a mechanism efficiently targeted by several disease-modifying treatments developed to treat multiple sclerosis (MS), such as natalizumab. We previously showed that memory CD4...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2016.12.006
更新日期:2017-01-03 00:00:00
abstract::Hypermethylation-mediated tumor suppressor gene (TSG) silencing is a central epigenetic alteration in RAS-dependent tumorigenesis. Ten-eleven translocation (TET) enzymes can depress DNA methylation by hydroxylation of 5-methylcytosine (5mC) bases to 5-hydroxymethylcytosine (5hmC). Here, we report that suppression of T...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2014.10.063
更新日期:2014-12-11 00:00:00
abstract::Bat cells and tissue have elevated basal expression levels of antiviral genes commonly associated with interferon alpha (IFNα) signaling. Here, we show Interferon Regulatory Factor 1 (IRF1), 3, and 7 levels are elevated in most bat tissues and that, basally, IRFs contribute to the expression of type I IFN ligands and ...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.108345
更新日期:2020-11-03 00:00:00
abstract::The Hedgehog (Hh) and Wnt/β-Catenin (Wnt) cascades are morphogen pathways whose pronounced influence on adult liver metabolism has been identified in recent years. How both pathways communicate and control liver metabolic functions are largely unknown. Detecting core components of Wnt and Hh signaling and mathematical...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2019.11.104
更新日期:2019-12-24 00:00:00
abstract::Sex differences in autoimmunity and infection suggest that a better understanding of molecular sex differences will improve the diagnosis and treatment of immune-related disease. We identified 144 differentially expressed genes, referred to as immune sex expression signature (iSEXS), between human males and females us...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2019.10.019
更新日期:2019-11-12 00:00:00
abstract::Either caspase-1 or caspase-11 can cleave gasdermin D to cause pyroptosis, eliminating intracellular replication niches. We previously showed that macrophages detect Burkholderia thailandensis via NLRC4, triggering the release of interleukin (IL)-18 and driving an essential interferon (IFN)-γ response that primes casp...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.107967
更新日期:2020-07-28 00:00:00
abstract::Eukaryotic DNA replication licensing is a prerequisite for, and plays a role in, regulating genome duplication that occurs exactly once per cell cycle. ORC (origin recognition complex) binds to and marks replication origins throughout the cell cycle and loads other replication-initiation proteins onto replication orig...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.02.046
更新日期:2020-03-10 00:00:00
abstract::Electrons feed into the mitochondrial electron transport chain (mETC) from NAD- or FAD-dependent enzymes. A shift from glucose to fatty acids increases electron flux through FAD, which can saturate the oxidation capacity of the dedicated coenzyme Q (CoQ) pool and result in the generation of reactive oxygen species. To...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2016.03.009
更新日期:2016-04-05 00:00:00
abstract::53BP1 plays a central role in dictating DNA repair choice between non-homologous end joining (NHEJ) and homologous recombination (HR), which is important for the sensitivity to poly(ADP-ribose) polymerase inhibitors (PARPis) of BRCA1-deficient cancers. In this study, we show that FOXK1 associates with 53BP1 and regula...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.108018
更新日期:2020-08-11 00:00:00
abstract::In spinal muscular atrophy, a neurodegenerative disease caused by ubiquitous deficiency in the survival motor neuron (SMN) protein, sensory-motor synaptic dysfunction and increased excitability precede motor neuron (MN) loss. Whether central synaptic dysfunction and MN hyperexcitability are cell-autonomous events or t...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2016.06.087
更新日期:2016-08-02 00:00:00
abstract::Organisms need to assess their nutritional state and adapt their digestive capacity to the demands for various nutrients. Modulation of digestive enzyme production represents a rational step to regulate nutriment uptake. However, the role of digestion in nutrient homeostasis has been largely neglected. In this study, ...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2014.08.064
更新日期:2014-10-09 00:00:00
abstract::Chronic itch or pruritus is a debilitating disorder that is refractory to conventional anti-histamine treatment. Kappa opioid receptor (KOR) agonists have been used to treat chronic itch, but the underlying mechanism remains elusive. Here, we find that KOR and gastrin-releasing peptide receptor (GRPR) overlap in the s...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2018.03.087
更新日期:2018-04-17 00:00:00
abstract::Bacterial genes that change in expression upon environmental disturbance have commonly been seen as those that must also phenotypically matter. However, several studies suggest that differentially expressed genes are rarely phenotypically important. We demonstrate, for Gram-positive and Gram-negative bacteria, that th...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2017.07.062
更新日期:2017-08-15 00:00:00
abstract::Wiskott-Aldrich syndrome protein (WASp) is a main cytoskeletal regulator in B cells. WASp-interacting protein (WIP) binds to and stabilizes WASp but also interacts with actin. Using mice with a mutated actin binding domain of WIP (WIPΔABD), we here investigated the role of WIP binding to actin during B cell activation...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2018.06.051
更新日期:2018-07-17 00:00:00
abstract::The innate immune system plays key roles in tissue regeneration. For example, microglia promote neurogenesis in Müller glia in birds and fish after injury. Although mammalian retina does not normally regenerate, neurogenesis can be induced in mouse Müller glia by Ascl1, a proneural transcription factor. We show that i...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2020.108507
更新日期:2020-12-15 00:00:00
abstract::Increased calpain activity is linked to neuroinflammation including a heritable retinal disease caused by hyper-activating mutations in the calcium-activated calpain-5 (CAPN5) protease. Although structures for classical calpains are known, the structure of CAPN5, a non-classical calpain, remains undetermined. Here we ...
journal_title:Cell reports
pub_type: 杂志文章
doi:10.1016/j.celrep.2019.12.077
更新日期:2020-01-21 00:00:00