Sequence analysis of a cryptic plasmid pKW2124 from Weissella cibaria KLC140 and construction of a surface display vector.

Abstract:

:Plasmid isolation of kimchi-derived Weissella cibaria KLC140 revealed six different plasmids. The smallest plasmid, pKW2124, was DNA sequenced and characterized, showing 2,124 bp with a GC content of 36.39% and five putative open reading frames (ORFs). In silico analysis of these ORFs showed ORF1 encodes a putative replication protein similar to rolling circular replication proteins from other lactic acid bacteria. However, a single-stranded intermediate was not detected when S1 nuclease was treated, suggesting it may follow theta replication. Interestingly, the replication initiation site of this plasmid is 100% identical to other plasmids from lactic acid bacteria, suggesting it may function for replication initiation. To construct a surface layer expression vector, pTSLGFP, slpA encoding the surface layer protein from Lactobacillus acidophilus was PCR amplified and fused with the gfp gene, forming a SLGFP fused gene. The plasmid pKW2124 was cloned into the XbaI site of pUC19, forming an Weissella-E. coli shuttle vector pKUW22. NheI-linearized pTSLGFP was ligated into pKUWCAT containing pKUW22 and the chloramphenicol acetyltransferase gene from pEK104, resulting in an 8.6 kb pKWCSLGFP surface layer expression vector. After transformation of this vector into W. cibaria KLC140, a GFP fluorescence signal was detected on the surface of the transformant, substantiating production of SLGFP fused protein and its secretion. This is the first report for construction of a Weissella surface layer expression vector, which may be useful for surface layer production of beneficial proteins in Weissella.

journal_name

J Microbiol Biotechnol

authors

Kim SY,Oh CG,Lee YJ,Choi KH,Shin DS,Lee SK,Park KJ,Shin H,Park MS,Lee JH

doi

10.4014/jmb.1301.01018

subject

Has Abstract

pub_date

2013-04-01 00:00:00

pages

545-54

issue

4

eissn

1017-7825

issn

1738-8872

pii

JMB023-04-15

journal_volume

23

pub_type

杂志文章
  • Bifunctional recombinant fusion enzyme between maltooligosyltrehalose synthase and maltooligosyltrehalose trehalohydrolase of thermophilic microorganism Metallosphaera hakonensis.

    abstract::MhMTS and MhMTH are trehalose (alpha-D-glucopyranosyl- [1,1]-alpha-D-glucopyranose) biosynthesis genes of the thermophilic microorganism Metallosphaera hakonensis, and encode a maltooligosyltrehalose synthase (MhMTS) and a maltooligosyltrehalose trehalohydrolase (MhMTH), respectively. In this study, the two genes were...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Seo JS,An JH,Cheong JJ,Choi YD,Kim CH

    更新日期:2008-09-01 00:00:00

  • Optimal Temperature and Light Intensity for Improved Mixotrophic Metabolism of Chlorella sorokiniana Treating Livestock Wastewater.

    abstract::Mixotrophic microalgal growth gives a great premise for wastewater treatment based on photoautotrophic nutrient utilization and heterotrophic organic removal while producing renewable biomass. There remains a need for a control strategy to enrich them in a photobioreactor. This study performed a series of batch experi...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1707.07007

    authors: Lee TH,Jang JK,Kim HW

    更新日期:2017-11-28 00:00:00

  • Effect of ionic liquid on the kinetics of peroxidase catalysis.

    abstract::The effect of a water-miscible ionic liquid, 1-butyl-3-methylimidazolium tetrafluoroborate ([BMIM][BF4]), on the horseradish peroxidase (HRP)-catalyzed oxidation of 2-methoxyphenol (guaiacol) with hydrogen peroxide (H2O2) was investigated. HRP maintains its high activity in the aqueous mixtures containing various conc...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Lee YM,Kwon OY,Yoo IK,Ryu KG

    更新日期:2007-04-01 00:00:00

  • Immobilization and characterization of tannase from a metagenomic library and its use for removal of tannins from green tea infusion.

    abstract::Tannase (Tan410) from a soil metagenomic library was immobilized on different supports, including mesoporous silica SBA-15, chitosan, calcium alginate, and amberlite IRC 50. Entrapment in calcium alginate beads was comparatively found to be the best method and was further characterized. The optimum pH of the immobiliz...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1308.08047

    authors: Yao J,Chen Q,Zhong G,Cao W,Yu A,Liu Y

    更新日期:2014-01-01 00:00:00

  • Influence of plant species and environmental conditions on epiphytic and endophytic pink-pigmented facultative methylotrophic bacterial populations associated with field-grown rice cultivars.

    abstract::The total methylotrophic population associated with rice plants from different cultivars was enumerated at three different stages: vegetative, flowering, and harvesting. The bacterial population in the leaf, rhizosphere soil, endophytic in the stem and roots, and epiphytic in the florets and grains were determined fro...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Madhaiyan M,Poonguzhali S,Sa T

    更新日期:2007-10-01 00:00:00

  • Inhibitory effect of hexane fraction from Myagropsis myagroides on pancreatic α-amylase in vitro.

    abstract::A Myagropsis myagroides (Mm) methanol extract showed α-amylase inhibitory activity of 13% at a concentration of 5 mg/ml. Results showed that the hexane fraction from the Mm methanol extract exhibited α-amylase inhibitory activity with an IC50 value of 4.24 mg/ml. The hexane fraction was separated using silica-gel colu...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1409.09012

    authors: Pak WM,Kim KB,Kim MJ,Cho JY,Ahn DH

    更新日期:2015-03-01 00:00:00

  • Role of LuxIR Homologue AnoIR in Acinetobacter nosocomialis and the Effect of Virstatin on the Expression of anoR Gene.

    abstract::Quorum sensing is a process of cell-to-cell communication in which bacteria produce autoinducers as signaling molecules to sense cell density and coordinate gene expression. In the present study, a LuxI-type synthase, AnoI, and a LuxR-type regulator, AnoR, were identified in Acinetobacter nosocomialis, an important no...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1504.04069

    authors: Oh MH,Choi CH

    更新日期:2015-08-01 00:00:00

  • Diversity and Plant Growth-Promoting Effects of Fungal Endophytes Isolated from Salt-Tolerant Plants.

    abstract::Fungal endophytes are symbiotic microorganisms that are often found in asymptomatic plants. This study describes the genetic diversity of the fungal endophytes isolated from the roots of plants sampled from the west coast of Korea. Five halophytic plant species, Limonium tetragonum, Suaeda australis, Suaeda maritima, ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2006.06050

    authors: Khalmuratova I,Choi DH,Woo JR,Jeong MJ,Oh Y,Kim YG,Lee IJ,Choo YS,Kim JG

    更新日期:2020-11-28 00:00:00

  • Characterization of Bacillus polyfermenticus KJS-2 as a probiotic.

    abstract::The identification and characterization of Bacillus polyfermenticus KJS-2 (B. polyfermenticus KJS-2) was conducted using TEM, an API 50CHB kit, 16S rDNA sequencing, a phylogenetic tree, and catalase and oxidase testing. The conversion rate of glucose to lactic acid by B. polyfermenticus KJS-2 was found to be 60.71+/-4...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.0903.113

    authors: Kim KM,Kim MJ,Kim DH,Park YS,Kang JS

    更新日期:2009-09-01 00:00:00

  • Interaction between the quorum sensing and stringent response regulation systems in the enterohemorrhagic Escherichia coli O157:H7 EDL933 strain.

    abstract::Quorum sensing and the stringent response are well-known regulation systems for the expression of virulence genes in enterohemorrhagic Escherichia coli (EHEC). However, how these two systems interact is not well known. E. coli strains with mutations in two regulation systems, ΔluxS (ECM101) and ΔluxSΔrelAΔspoT (ECM201...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Oh KH,Cho SH

    更新日期:2014-03-28 00:00:00

  • Enhanced production of gamma-aminobutyric acid using rice bran extracts by Lactobacillus sakei B2-16.

    abstract::An efficient and simple fermentation process was developed for the production of gamma-amminobutyric acid (GABA) by Lactobacillus sakei B2-16. When the L. sakei B2-16 was cultivated in the rice bran extracts medium containing 4% sucrose, 1% yeast extract and 12% monosodium glutamate, the maximum GABA concentration rea...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Kook MC,Seo MJ,Cheigh CI,Pyun YR,Cho SC,Park H

    更新日期:2010-04-01 00:00:00

  • Alteration of the Metabolome Profile in Endothelial Cells by Overexpression of miR-143/145.

    abstract::Communication between endothelial cells (ECs) and smooth muscle cells (SMCs) via miR-143/145 clusters is vital to vascular stability. Previous research demonstrates that miR-143/145 released from ECs can regulate SMC proliferation and migration. In addition, a recent study has found that SMCs also have the capability ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1507.07103

    authors: Wang W,Yang Y,Wang Y,Pang L,Huang J,Tao H,Sun X,Liu C

    更新日期:2016-03-01 00:00:00

  • Anaerobic lipid degradation through acidification and methanization.

    abstract::In biological wastewater treatment high lipid concentration is known to inhibit microorganisms and cause active biomass flotation. To reduce lipid inhibition, a two-phase anaerobic system, consisting of an anaerobic sequencing batch reactor (ASBR) and an upflow anaerobic sludge blanket (UASB) reactor, was applied to s...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Kim I,Kim SH,Shin HS,Jung JY

    更新日期:2010-01-01 00:00:00

  • Study of specific oligosaccharide structures related with swine flu (H1N1) and avian flu, and tamiflu as their remedy.

    abstract::The infection of pandemic influenza viruses such as swine flu (H1N1) and avian flu viruses to the host cells is related to the following two factors: First, the surface protein such as HA (hemagglutinin) and NA (neuraminidase) of the influenza virus. Second, the specific structure of the oligosaccharide [sialic acid(a...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章,评审

    doi:10.4014/jmb.1009.09013

    authors: Yoo ES

    更新日期:2011-05-01 00:00:00

  • Difference in the Gut Microbiome between Ovariectomy-Induced Obesity and Diet-Induced Obesity.

    abstract::During menopausal transition, the imbalance of estrogen causes body weight gain. Although gut microbiome dysbiosis has been reported in postmenopausal obesity, it is not clear whether there is any difference in the microbiome profile between dietary-induced obesity and postmenopausal obesity. Therefore, in this study,...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1710.10001

    authors: Choi S,Hwang YJ,Shin MJ,Yi H

    更新日期:2017-12-28 00:00:00

  • Efficacy of Poly-Gamma-Glutamic Acid in Women with High-Risk Human Papillomavirus-Positive Vaginal Intraepithelial Neoplasia: an Observational Pilot Study.

    abstract::Poly-gamma-glutamic acid (γ-PGA) is a natural polymer that is synthesized by Bacillus species and has been reported to have antitumor activity. The aim of this study was to investigate the effect of γ-PGA on the treatment of vaginal intraepithelial neoplasia (VAIN). A retrospective observational study on γ-PGA therapy...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1503.03106

    authors: Koo YJ,Min KJ,Hong JH,Lee JK

    更新日期:2015-07-01 00:00:00

  • Alternative Carcinogenicity Screening Assay Using Colon Cancer Stem Cells: A Quantitative PCR (qPCR)-Based Prediction System for Colon Carcinogenesis.

    abstract::The carcinogenicity of chemicals in the environment is a major concern. Recently, numerous studies have attempted to develop methods for predicting carcinogenicity, including rodent and cell-based approaches. However, rodent carcinogenicity tests for evaluating the carcinogenic potential of a chemical to humans are ti...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1712.12043

    authors: Bak Y,Jang HJ,Shin JW,Kim SJ,Chun HW,Seo JH,No SH,Chae JI,Son DH,Lee SY,Hong J,Yoon DY

    更新日期:2018-04-28 00:00:00

  • The Flower Extract of Abelmoschus manihot (Linn.) Increases Cyclin D1 Expression and Activates Cell Proliferation.

    abstract::Abelmoschus manihot (Linn.) is a medicinal herbal plant that is commonly used to treat chronic kidney disease and hepatitis. However, its effect on cell proliferation has not been clearly revealed. In this report, we sought to determine the effect of the flower extract of A. manihot (FA) on cell proliferation. Based o...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2002.02024

    authors: Park YI,Cha YE,Jang M,Park R,Namkoong S,Kwak J,Jang IS,Park J

    更新日期:2020-07-28 00:00:00

  • Isolation of Probiotic Piliated Lactobacillus rhamnosus Strains from Human Fecal Microbiota Using SpaA Antiserum-Based Colony Immunoblotting.

    abstract::Piliated Lactobacillus rhamnosus (pLR) strains possess higher adherent capacity than non-piliated strains. The objective of this study was to isolate and characterize probiotic pLR strains in human fecal samples. To this end, mouse polyclonal antiserum (anti-SpaA) against the recombinant pilus protein (SpaA) of L. rha...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1705.05055

    authors: Yang ZQ,Xue Y,Rao SQ,Zhang M,Gao L,Yin YQ,Chen DW,Zhou XH,Jiao XA

    更新日期:2017-11-28 00:00:00

  • Improving Catalytic Efficiency and Changing Substrate Spectrum for Asymmetric Biocatalytic Reductive Amination.

    abstract::With the advantages of biocatalytic method, enzymes have been excavated for the synthesis of chiral amino acids by the reductive amination of ketones, offering a promising way of producing pharmaceutical intermediates. In this work, a robust phenylalanine dehydrogenase (PheDH) with wide substrate spectrum and high cat...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1907.07015

    authors: Jiang W,Wang Y

    更新日期:2020-01-28 00:00:00

  • Genome-wide drug-induced haploinsufficient screening of fission yeast for identification of hydrazinocurcumin targets.

    abstract::Hydrazinocurcumin (HC), a synthetic derivative of curcumin, has been reported to inhibit angiogenesis via unknown mechanisms. Understanding the molecular mechanisms of the drug's action is important for the development of improved compounds with better pharmacological properties. A genomewide drug-induced haploinsuffi...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Baek ST,Kim DU,Han S,Woo IS,Nam M,Kim L,Heo KS,Lee H,Hwang HR,Choi SJ,Won M,Lee M,Park SK,Lee S,Kwon HJ,Maeng PJ,Park HM,Park Y,Kim D,Hoe KL

    更新日期:2008-02-01 00:00:00

  • Ecotype-dependent genetic regulation of bolting time in the Arabidopsis mutants with increased number of leaves.

    abstract::Leaves are the major biomass-producing organs in herbaceous plants and mainly develop during vegetative stage by activities of shoot apical meristem. There is a strong correlation between leaf number and bolting, a characteristic phenotype during the transition to reproductive phase in Arabidopsis thaliana. In order t...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Lee BH

    更新日期:2009-06-01 00:00:00

  • Bioethanol production from the hydrolysate of rape stem in a surface-aerated fermentor.

    abstract::In this study, we investigated the feasibility of producing bioethanol from the hydrolysate of rape stem. Specifically, the most ideal yeast strain was screened, and the microaeration was performed by surface aeration on a liquid medium surface. Among the yeast strains examined, Pichia stipitis CBS 7126 displayed the ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1008.08001

    authors: Yeon JH,Lee SE,Choi WY,Choi WS,Kim IC,Lee HY,Jung KH

    更新日期:2011-01-01 00:00:00

  • Optimization of yeast surface-displayed cDNA library screening for low abundance targets.

    abstract::The yeast surface-displayed cDNA library has been used to identify unknown antigens. However, when unknown target antigens show moderate-to-low abundance, some modifications are needed in the screening process. In this study, a directional random-primed cDNA library was used to increase the number of candidates for th...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1409.09079

    authors: Kim JY,Kim HK,Jang HJ,Kim EK,Kim MK

    更新日期:2015-04-01 00:00:00

  • Morphology and adhesion of Campylobacter jejuni to chicken skin under varying conditions.

    abstract::The adhesion of Campylobacter jejuni to chicken skin, along with the associated morphological changes under aerobic conditions at 4, 25, and 37 degrees C and microaerobic (O2 5%, CO2 10%, N2 85%) conditions, were investigated using confocal laser scanning microscopy (CLSM), flow cytometry, and plate counting. The morp...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:

    authors: Jang KI,Kim MG,Ha SD,Kim KS,Lee KH,Chung DH,Kim CH,Kim KY

    更新日期:2007-02-01 00:00:00

  • A Bioactive Fraction from Streptomyces sp. Enhances Maize Tolerance against Drought Stress.

    abstract::Drought stress is threatening the growth and productivity of many economical crops. Therefore, it is necessary to establish innovative and efficient approaches for improving crop growth and productivity. Here we investigated the potentials of the cell-free extract of Actinobacteria (Ac) isolated from a semi-arid habit...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.2003.03034

    authors: Warrad M,Hassan YM,Mohamed MSM,Hagagy N,Al-Maghrabi OA,Selim S,Saleh AM,AbdElgawad H

    更新日期:2020-08-28 00:00:00

  • Evaluation of a pretreatment method for two-dimensional gel electrophoresis of synovial fluid using cartilage oligomeric matrix protein as a marker.

    abstract::Osteoarthritis (OA) is the most common rheumatic pathology. One of the major objectives of OA research is the development of early diagnostic strategies such as those using proteomic technology. Synovial fluid (SF) in OA patients is a potential source of biomarkers for OA. The efficient and reliable preparation of SF ...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1111.11005

    authors: Kong MK,Min BH,Lee PC

    更新日期:2012-05-01 00:00:00

  • Antagonistic potentiality of Trichoderma harzianum towards seed-borne fungal pathogens of winter wheat cv. Protiva in vitro and in vivo.

    abstract::The antagonistic effect of Trichoderma harzianum on a range of seed-borne fungal pathogens of wheat (viz. Fusarium graminearum, Bipolaris sorokiniana, Aspergillus spp., and Penicillium spp.) was assessed. The potential of T. harzianum as a biocontrol agent was tested in vitro and under field conditions. Coculture of t...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1107.07063

    authors: Hasan MM,Rahman SM,Kim GH,Abdallah E,Oh DH

    更新日期:2012-05-01 00:00:00

  • Characterization of gibberellin biosynthetic gene cluster from Fusarium proliferatum.

    abstract::Gibberellins (GAs) are a group of phytohormones that control many developmental processes in higher plants. We report the cloning and expression pattern of gibberellin biosynthesis genes from a new GA-producing fungus, Fusarium proliferatum (strain KGL0401). These genes sequences are deposited in the National Center f...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1212.12029

    authors: Rim SO,You YH,Yoon H,Kim YE,Lee JH,Kang MS,Kim C,Seu YB,Kim JG

    更新日期:2013-05-01 00:00:00

  • Purification of capsular polysaccharide produced by Streptococcus pneumoniae serotype 19A.

    abstract::Streptococcus pneumoniae is a major cause of invasive infection in young infants and older adults. There are currently 90 capsular serotypes identified and 23 serotypes (1, 2, 3, 4, 5, 6B, 7F, 8, 9N, 9V, 10A, 11A, 12F, 14, 15B, 17F, 18C, 19F, 19A, 20, 22F, 23F, and 33F) are responsible for about 90% of invasive diseas...

    journal_title:Journal of microbiology and biotechnology

    pub_type: 杂志文章

    doi:10.4014/jmb.1010.10043

    authors: Jung SJ,Seo ES,Yun SI,Minh BN,Jin SD,Ryu HJ,Kim D

    更新日期:2011-07-01 00:00:00