A hydration-based biophysical index for the onset of soil microbial coexistence.

Abstract:

:Mechanistic exploration of the origins of the unparalleled soil microbial biodiversity represents a vast and uncharted scientific frontier. Quantification of candidate mechanisms that promote and sustain such diversity must be linked with microbial functions and measurable biophysical interactions at appropriate scales. We report a novel microbial coexistence index (CI) that links macroscopic soil hydration conditions with microscale aquatic habitat fragmentation that impose restrictions on cell dispersion and growth rates of competing microbial populations cohabiting soil surfaces. The index predicts a surprisingly narrow range of soil hydration conditions that suppress microbial coexistence; and for most natural conditions found in soil hydration supports coexistence. The critical hydration conditions and relative abundances of competing species are consistent with limited experimental observations and with individual-based model simulations. The proposed metric offers a means for systematic evaluation of factors that regulate microbial coexistence in an ecologically consistent fashion.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Wang G,Or D

doi

10.1038/srep00881

subject

Has Abstract

pub_date

2012-01-01 00:00:00

pages

881

issn

2045-2322

journal_volume

2

pub_type

杂志文章
  • Hormone therapy at early post-menopause increases cognitive control-related prefrontal activity.

    abstract::Clinical data have been equivocal and controversial as to the benefits to the brain and cognition of hormone therapy (HT) in postmenopausal women. Recent reevaluation of the role of estrogens proposed that HT may effectively prevent the deleterious effects of aging on cognition, and reduces the risks of dementia, incl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44917

    authors: Girard R,Météreau E,Thomas J,Pugeat M,Qu C,Dreher JC

    更新日期:2017-03-21 00:00:00

  • Author Correction: Designing a whole cell bioreporter to show antioxidant activities of agents that work by promotion of the KEAP1-NRF2 signaling pathway.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-74319-y

    authors: Mozaheb N,Arefian E,Amoozegar MA

    更新日期:2020-10-28 00:00:00

  • D-serine, a novel uremic toxin, induces senescence in human renal tubular cells via GCN2 activation.

    abstract::The prevalence of chronic kidney disease (CKD), characterized by progressive renal dysfunction with tubulointerstitial fibrosis, is increasing because of societal aging. Uremic toxins, accumulated during renal dysfunction, cause kidney damage, leading to renal deterioration. A recent metabolomic analysis revealed that...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-11049-8

    authors: Okada A,Nangaku M,Jao TM,Maekawa H,Ishimono Y,Kawakami T,Inagi R

    更新日期:2017-09-11 00:00:00

  • Control of source fertility on the eruptive activity of Piton de la Fournaise volcano, La Réunion.

    abstract::The eruptive activity of basaltic hotspot volcanoes displays major fluctuations on times scales of years to decades. Theses fluctuations are thought to reflect changes in the rate of mantle melt supply. However, the crustal filter generally masks the mantle processes involved. Here, we show that the cyclic and general...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32809-0

    authors: Vlastélic I,Di Muro A,Bachèlery P,Gurioli L,Auclair D,Gannoun A

    更新日期:2018-09-27 00:00:00

  • Altered metabolic gene expression in the brain of a triprolyl-human amylin transgenic mouse model of type 2 diabetes.

    abstract::Type 2 diabetes mellitus is a major health concern worldwide; however, the molecular mechanism underlying its development is poorly understood. The hormone amylin is postulated to be involved, as human amylin forms amyloid in the pancreases of diabetic patients, and oligomers have been shown to be cytotoxic to β-cells...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51088-x

    authors: Nie T,Zhang S,Vazhoor Amarsingh G,Liu H,McCann MJ,Cooper GJS

    更新日期:2019-10-10 00:00:00

  • Kinetics of recruitment and allosteric activation of ARHGEF25 isoforms by the heterotrimeric G-protein Gαq.

    abstract::Rho GTPases are master regulators of the eukaryotic cytoskeleton. The activation of Rho GTPases is governed by Rho guanine nucleotide exchange factors (GEFs). Three RhoGEF isoforms are produced by the gene ARHGEF25; p63RhoGEF580, GEFT and a recently discovered longer isoform of 619 amino acids (p63RhoGEF619). The subc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36825

    authors: van Unen J,Yin T,Wu YI,Mastop M,Gadella TW Jr,Goedhart J

    更新日期:2016-11-11 00:00:00

  • Fecal Bacterial Communities in treated HIV infected individuals on two antiretroviral regimens.

    abstract::Intestinal microbiome changes that occur in HIV positive individuals on different antiretroviral therapy (ART) regimens are important to understand, as they are potentially linked with chronic inflammation and microbiome-linked comorbidities that occur at increased incidence in this population. We conducted a cross-se...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43741

    authors: Pinto-Cardoso S,Lozupone C,Briceño O,Alva-Hernández S,Téllez N,Adriana A,Murakami-Ogasawara A,Reyes-Terán G

    更新日期:2017-03-06 00:00:00

  • Visuo-acoustic stimulation that helps you to relax: A virtual reality setup for patients in the intensive care unit.

    abstract::After prolonged stay in an intensive care unit (ICU) patients often complain about cognitive impairments that affect health-related quality of life after discharge. The aim of this proof-of-concept study was to test the feasibility and effects of controlled visual and acoustic stimulation in a virtual reality (VR) set...

    journal_title:Scientific reports

    pub_type: 临床试验,杂志文章

    doi:10.1038/s41598-017-13153-1

    authors: Gerber SM,Jeitziner MM,Wyss P,Chesham A,Urwyler P,Müri RM,Jakob SM,Nef T

    更新日期:2017-10-16 00:00:00

  • In-situ behavioural and physiological responses of Antarctic microphytobenthos to ocean acidification.

    abstract::Ocean acidification (OA) is predicted to alter benthic marine community structure and function, however, there is a paucity of field experiments in benthic soft sediment communities and ecosystems. Benthic diatoms are important components of Antarctic coastal ecosystems, however very little is known of how they will r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-36233-2

    authors: Black JG,Stark JS,Johnstone GJ,McMinn A,Boyd P,McKinlay J,Wootherspoon S,Runcie JW

    更新日期:2019-02-13 00:00:00

  • Distinct enhancement of sub-bandgap photoresponse through intermediate band in high dose implanted ZnTe:O alloys.

    abstract::The demand for high efficiency intermediate band (IB) solar cells is driving efforts in producing high quality IB photovoltaic materials. Here, we demonstrate ZnTe:O highly mismatched alloys synthesized by high dose ion implantation and pulsed laser melting exhibiting optically active IB states and efficient sub-gap p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44399

    authors: Li J,Ye J,Ren F,Tang D,Yang Y,Tang K,Gu S,Zhang R,Zheng Y

    更新日期:2017-03-10 00:00:00

  • Disease-syndrome combination modeling: metabolomic strategy for the pathogenesis of chronic kidney disease.

    abstract::Conventional disease animal models have limitations on the conformity to the actual clinical situation. Disease-syndrome combination (DS) modeling may provide a more efficient strategy for biomedicine research. Disease model and DS model of renal fibrosis in chronic kidney disease were established by ligating the left...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09311-0

    authors: Li S,Xu P,Han L,Mao W,Wang Y,Luo G,Yang N

    更新日期:2017-08-18 00:00:00

  • Coordinated cell motility is regulated by a combination of LKB1 farnesylation and kinase activity.

    abstract::Cell motility requires the precise coordination of cell polarization, lamellipodia formation, adhesion, and force generation. LKB1 is a multi-functional serine/threonine kinase that associates with actin at the cellular leading edge of motile cells and suppresses FAK. We sought to understand how LKB1 coordinates these...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40929

    authors: Wilkinson S,Hou Y,Zoine JT,Saltz J,Zhang C,Chen Z,Cooper LA,Marcus AI

    更新日期:2017-01-19 00:00:00

  • HMGB2 is a novel adipogenic factor that regulates ectopic fat infiltration in skeletal muscles.

    abstract::Although various surgical procedures have been developed for chronic rotator cuff tear repair, the re-tear rate remains high with severe fat infiltration. However, little is known about the molecular regulation of this process. Mesenchymal stem cells (MSCs) in the intra-muscular space are origin of ectopic fat cells i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28023-7

    authors: Lee D,Taniguchi N,Sato K,Choijookhuu N,Hishikawa Y,Kataoka H,Morinaga H,Lotz M,Chosa E

    更新日期:2018-06-25 00:00:00

  • A core extended naphtalene diimide G-quadruplex ligand potently inhibits herpes simplex virus 1 replication.

    abstract::G-quadruplexes (G4s) are nucleic acids secondary structures, epigenetic regulators in cells and viruses. In herpes simplex virus 1 (HSV-1)-infected cells, G4s are massively present during viral replication. We here aimed at investigating the possibility to target the HSV-1 G4s by a core extended naphtalene diimide (c-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02667-3

    authors: Callegaro S,Perrone R,Scalabrin M,Doria F,Palù G,Richter SN

    更新日期:2017-05-24 00:00:00

  • C70 Fullerene Cage as a Novel Catalyst for Efficient Proton Transfer Reactions between Small Molecules: A Theoretical study.

    abstract::When acids are supplied with an excess electron (or placed in an Ar or the more polarizable N2 matrix) in the presence of species such as NH3, the formation of ion-pairs is a likely outcome. Using density functional theory and first-principles calculations, however, we show that, without supplying an external electron...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46725-4

    authors: Varadwaj PR,Varadwaj A,Marques HM

    更新日期:2019-07-23 00:00:00

  • Relating quantum coherence and correlations with entropy-based measures.

    abstract::Quantum coherence and quantum correlations are important quantum resources for quantum computation and quantum information. In this paper, using entropy-based measures, we investigate the relationships between quantum correlated coherence, which is the coherence between subsystems, and two main kinds of quantum correl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09332-9

    authors: Wang XL,Yue QL,Yu CH,Gao F,Qin SJ

    更新日期:2017-09-21 00:00:00

  • Insights into the species-specific metabolic engineering of glucosinolates in radish (Raphanus sativus L.) based on comparative genomic analysis.

    abstract::Glucosinolates (GSLs) and their hydrolysis products present in Brassicales play important roles in plants against herbivores and pathogens as well as in the protection of human health. To elucidate the molecular mechanisms underlying the formation of species-specific GSLs and their hydrolysed products in Raphanus sati...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16306-4

    authors: Wang J,Qiu Y,Wang X,Yue Z,Yang X,Chen X,Zhang X,Shen D,Wang H,Song J,He H,Li X

    更新日期:2017-11-22 00:00:00

  • Porcine milk-derived exosomes promote proliferation of intestinal epithelial cells.

    abstract::Milk-derived exosomes were identified as a novel mechanism of mother-to-child transmission of regulatory molecules, but their functions in intestinal tissues of neonates are not well-studied. Here, we characterized potential roles of porcine milk-derived exosomes in the intestinal tract. In vitro, treatment with milk-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep33862

    authors: Chen T,Xie MY,Sun JJ,Ye RS,Cheng X,Sun RP,Wei LM,Li M,Lin DL,Jiang QY,Xi QY,Zhang YL

    更新日期:2016-09-20 00:00:00

  • MitoCeption as a new tool to assess the effects of mesenchymal stem/stromal cell mitochondria on cancer cell metabolism and function.

    abstract::Mitochondrial activity is central to tissue homeostasis. Mitochondria dysfunction constitutes a hallmark of many genetic diseases and plays a key role in tumor progression. The essential role of mitochondria, added to their recently documented capacity to transfer from cell to cell, obviously contributes to their curr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep09073

    authors: Caicedo A,Fritz V,Brondello JM,Ayala M,Dennemont I,Abdellaoui N,de Fraipont F,Moisan A,Prouteau CA,Boukhaddaoui H,Jorgensen C,Vignais ML

    更新日期:2015-03-13 00:00:00

  • Transgenerational Developmental Programming of Ovarian Reserve.

    abstract::Exposure to an adverse early-life environment leads to long-term health problems, many of which are recapitulated in subsequent generations. The female reproductive tract is particularly sensitive to early-life influences, and plays a pivotal role in programming the conceptus. We examine the influence of suboptimal gr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16175

    authors: Aiken CE,Tarry-Adkins JL,Ozanne SE

    更新日期:2015-11-03 00:00:00

  • Ultrafast synaptic events in a chalcogenide memristor.

    abstract::Compact and power-efficient plastic electronic synapses are of fundamental importance to overcoming the bottlenecks of developing a neuromorphic chip. Memristor is a strong contender among the various electronic synapses in existence today. However, the speeds of synaptic events are relatively slow in most attempts at...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep01619

    authors: Li Y,Zhong Y,Xu L,Zhang J,Xu X,Sun H,Miao X

    更新日期:2013-01-01 00:00:00

  • Nutritional status of honey bee (Apis mellifera L.) workers across an agricultural land-use gradient.

    abstract::Land use, habitat, and forage quality have emerged as critical factors influencing the health, productivity, and survival of honey bee colonies. However, characterization of the mechanistic relationship between differential land-use conditions and ultimate outcomes for honey bee colonies has been elusive. We assessed ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52485-y

    authors: Smart MD,Otto CRV,Lundgren JG

    更新日期:2019-11-07 00:00:00

  • Energy gaps in Bi(2)Sr(2)CaCu(2)O(8+δ) cuprate superconductors.

    abstract::The relationship between the cuprate pseudogap (Δ(p)) and superconducting gap (Δ(s)) remains an unsolved mystery. Here, we present a temperature- and doping-dependent tunneling study of submicron Bi(2)Sr(2)CaCu(2)O(8+δ) intrinsic Josephson junctions, which provides a clear evidence that Δ(s) closes at a temperature T(...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep00248

    authors: Ren JK,Zhu XB,Yu HF,Tian Y,Yang HF,Gu CZ,Wang NL,Ren YF,Zhao SP

    更新日期:2012-01-01 00:00:00

  • Phenome-wide association study for CYP2A6 alleles: rs113288603 is associated with hearing loss symptoms in elderly smokers.

    abstract::To identify novel phenotypic associations related to Cytochrome P450 Family 2 Subfamily A Member 6 (CYP2A6), we investigated the human phenome in a total of 11,271 individuals. Initially, we conducted a phenome-wide association study in 3,401 nicotine-exposed elderly subjects considering 358 phenotypic traits. We iden...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01098-4

    authors: Polimanti R,Jensen KP,Gelernter J

    更新日期:2017-04-21 00:00:00

  • Altered fluvial patterns in North China indicate rapid climate change linked to the Permian-Triassic mass extinction.

    abstract::The causes of the severest crisis in the history of life around the Permian-Triassic boundary (PTB) remain controversial. Here we report that the latest Permian alluvial plains in Shanxi, North China, went through a rapid transition from meandering rivers to braided rivers and aeolian systems. Soil carbonate carbon is...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53321-z

    authors: Zhu Z,Liu Y,Kuang H,Benton MJ,Newell AJ,Xu H,An W,Ji S,Xu S,Peng N,Zhai Q

    更新日期:2019-11-14 00:00:00

  • A ZIP6-ZIP10 heteromer controls NCAM1 phosphorylation and integration into focal adhesion complexes during epithelial-to-mesenchymal transition.

    abstract::The prion protein (PrP) evolved from the subbranch of ZIP metal ion transporters comprising ZIPs 5, 6 and 10, raising the prospect that the study of these ZIPs may reveal insights relevant for understanding the function of PrP. Building on data which suggested PrP and ZIP6 are critical during epithelial-to-mesenchymal...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40313

    authors: Brethour D,Mehrabian M,Williams D,Wang X,Ghodrati F,Ehsani S,Rubie EA,Woodgett JR,Sevalle J,Xi Z,Rogaeva E,Schmitt-Ulms G

    更新日期:2017-01-18 00:00:00

  • Fluorinated benzalkylsilane molecular rectifiers.

    abstract::We report on the synthesis and electrical properties of nine new alkylated silane self-assembled monolayers (SAMs) - (EtO)3Si(CH2)nN = CHPhX where n = 3 or 11 and X = 4-CF3, 3,5-CF3, 3-F-4-CF3, 4-F, or 2,3,4,5,6-F, and explore their rectification behavior in relation to their molecular structure. The electrical proper...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38092

    authors: Lamport ZA,Broadnax AD,Harrison D,Barth KJ,Mendenhall L,Hamilton CT,Guthold M,Thonhauser T,Welker ME,Jurchescu OD

    更新日期:2016-11-29 00:00:00

  • The effect of helminth infection on the microbial composition and structure of the caprine abomasal microbiome.

    abstract::Haemonchus contortus is arguably the most injurious helminth parasite for small ruminants. We characterized the impact of H. contortus infection on the caprine abomasal microbiome. Fourteen parasite naive goats were inoculated with 5,000 H. contortus infective larvae and followed for 50 days. Six age-matched naïve goa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20606

    authors: Li RW,Li W,Sun J,Yu P,Baldwin RL,Urban JF

    更新日期:2016-02-08 00:00:00

  • Optimal Universal Uncertainty Relations.

    abstract::We study universal uncertainty relations and present a method called joint probability distribution diagram to improve the majorization bounds constructed independently in [Phys. Rev. Lett. 111, 230401 (2013)] and [J. Phys. A. 46, 272002 (2013)]. The results give rise to state independent uncertainty relations satisfi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35735

    authors: Li T,Xiao Y,Ma T,Fei SM,Jing N,Li-Jost X,Wang ZX

    更新日期:2016-10-24 00:00:00

  • Targeting extra-oral bitter taste receptors modulates gastrointestinal motility with effects on satiation.

    abstract::Bitter taste receptors (TAS2Rs) are present in extra-oral tissues, including gut endocrine cells. This study explored the presence and mechanism of action of TAS2R agonists on gut smooth muscle in vitro and investigated functional effects of intra-gastric administration of TAS2R agonists on gastric motility and satiat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15985

    authors: Avau B,Rotondo A,Thijs T,Andrews CN,Janssen P,Tack J,Depoortere I

    更新日期:2015-11-06 00:00:00