Construction of a rhythm transfer system that mimics the cellular clock.

Abstract:

:Creation of an artificial oscillating gene expression system is one of the most challenging issues in synthetic biology. Here, we constructed a simple system to manipulate gene expression patterns to be circadian, reflecting the intrinsic cellular clock, by fusing a core clock protein, BMAL1 or CLOCK, with a zinc finger-type DNA binding domain. Circadian rhythmic gene expression was induced only when the target gene contained zinc finger-binding sequences. To our knowledge, this simple approach is the first to manipulate gene expression patterns into circadian rhythms and would be applicable to various endogenous genes.

journal_name

ACS Chem Biol

journal_title

ACS chemical biology

authors

Imanishi M,Yamamoto K,Yamada H,Hirose Y,Okamura H,Futaki S

doi

10.1021/cb300432s

subject

Has Abstract

pub_date

2012-11-16 00:00:00

pages

1817-21

issue

11

eissn

1554-8929

issn

1554-8937

journal_volume

7

pub_type

杂志文章
  • Sensing proteins through nanopores: fundamental to applications.

    abstract::Proteins subjected to an electric field and forced to pass through a nanopore induce blockades of ionic current that depend on the protein and nanopore characteristics and interactions between them. Recent advances in the analysis of these blockades have highlighted a variety of phenomena that can be used to study pro...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb300449t

    authors: Oukhaled A,Bacri L,Pastoriza-Gallego M,Betton JM,Pelta J

    更新日期:2012-12-21 00:00:00

  • Engineered EGF-A Peptides with Improved Affinity for Proprotein Convertase Subtilisin/Kexin Type 9 (PCSK9).

    abstract::The epidermal growth-factor-like domain A (EGF-A) of the low-density lipoprotein (LDL) receptor is a promising lead for therapeutic inhibition of proprotein convertase subtilisin/kexin type 9 (PCSK9). However, the clinical potential of EGF-A is limited by its suboptimal affinity for PCSK9. Here, we use phage display t...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00991

    authors: Tombling BJ,Lammi C,Lawrence N,Li J,Arnoldi A,Craik DJ,Wang CK

    更新日期:2021-01-29 00:00:00

  • Topology specific stabilization of promoter over telomeric G-quadruplex DNAs by bisbenzimidazole carboxamide derivatives.

    abstract::Various potential G-quadruplex forming sequences present in the genome offer a platform to modulate their function by means of stabilizing molecules. Though G-quadruplex structures exhibit diverse structural topologies, the presence of G-quartets as a common structural element makes the design of topology specific lig...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb5008597

    authors: Dhamodharan V,Harikrishna S,Bhasikuttan AC,Pradeepkumar PI

    更新日期:2015-03-20 00:00:00

  • Design and Application of a DNA-Encoded Macrocyclic Peptide Library.

    abstract::A DNA-encoded macrocyclic peptide library was designed and synthesized with 2.4 × 1012 members composed of 4-20 natural and non-natural amino acids. Affinity-based selection was performed against two therapeutic targets, VHL and RSV N protein. On the basis of selection data, some peptides were selected for resynthesis...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00852

    authors: Zhu Z,Shaginian A,Grady LC,O'Keeffe T,Shi XE,Davie CP,Simpson GL,Messer JA,Evindar G,Bream RN,Thansandote PP,Prentice NR,Mason AM,Pal S

    更新日期:2018-01-19 00:00:00

  • Site-Specific Radiofluorination of Biomolecules with 8-[(18)F]-Fluorooctanoic Acid Catalyzed by Lipoic Acid Ligase.

    abstract::New methodologies for site-specifically radiolabeling proteins with (18)F are required to generate high quality radiotracers for preclinical and clinical applications with positron emission tomography. Herein, we report an approach by which we use lipoic acid ligase (LplA) to conjugate [(18)F]-fluorooctanoic acid to a...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00172

    authors: Drake CR,Sevillano N,Truillet C,Craik CS,VanBrocklin HF,Evans MJ

    更新日期:2016-06-17 00:00:00

  • Cholesterol, it's not just for heart disease anymore.

    abstract::Recent studies have shown that cholesterol plays a significant role in the ability of Toxin A from Clostridium difficile to enter eukaryotic cells. The translocation process is one of three major steps during intoxication that could be targeted for intervention against the severe antibiotic-associated diarrhea caused ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb600133b

    authors: Kerzmann A,Feig AL

    更新日期:2006-04-25 00:00:00

  • Targeting the arginine phosphatase YwlE with a catalytic redox-based inhibitor.

    abstract::Protein phosphatases are critical regulators of cellular signaling in both eukaryotes and prokaryotes. The majority of protein phosphatases dephosphorylate phosphoserine/phosphothreonine or phosphotyrosine residues. Recently, however, YwlE, a member of the low-molecular weight protein tyrosine phosphatase (LMW-PTP) fa...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb4001469

    authors: Fuhrmann J,Subramanian V,Thompson PR

    更新日期:2013-09-20 00:00:00

  • Crystallographic fragment screening and structure-based optimization yields a new class of influenza endonuclease inhibitors.

    abstract::Seasonal and pandemic influenza viruses continue to be a leading global health concern. Emerging resistance to the current drugs and the variable efficacy of vaccines underscore the need for developing new flu drugs that will be broadly effective against wild-type and drug-resistant influenza strains. Here, we report ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400400j

    authors: Bauman JD,Patel D,Baker SF,Vijayan RS,Xiang A,Parhi AK,Martínez-Sobrido L,LaVoie EJ,Das K,Arnold E

    更新日期:2013-11-15 00:00:00

  • Regioselective hydroxylation of trans-resveratrol via inhibition of tyrosinase from Streptomyces avermitilis MA4680.

    abstract::Secreted tyrosinase from melanin-forming Streptomyces avermitilis MA4680 was involved in both ortho-hydroxylation and further oxidation of trans-resveratrol, leading to the formation of melanin. This finding was confirmed by constructing deletion mutants of melC(2) and melD(2) encoding extracellular and intracellular ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb300222b

    authors: Lee N,Kim EJ,Kim BG

    更新日期:2012-10-19 00:00:00

  • Reprogramming urokinase into an antibody-recruiting anticancer agent.

    abstract::Synthetic compounds for controlling or creating human immunity have the potential to revolutionize disease treatment. Motivated by challenges in this arena, we report herein a strategy to target metastatic cancer cells for immune-mediated destruction by targeting the urokinase-type plasminogen activator receptor (uPAR...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb200374e

    authors: Jakobsche CE,McEnaney PJ,Zhang AX,Spiegel DA

    更新日期:2012-02-17 00:00:00

  • pHLIP-FIRE, a cell insertion-triggered fluorescent probe for imaging tumors demonstrates targeted cargo delivery in vivo.

    abstract::We have developed an improved tool for imaging acidic tumors by reporting the insertion of a transmembrane helix: the pHLIP-Fluorescence Insertion REporter (pHLIP-FIRE). In acidic tissues, such as tumors, peptides in the pHLIP family insert as α-helices across cell membranes. The cell-inserting end of the pHLIP-FIRE p...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb500388m

    authors: Karabadzhak AG,An M,Yao L,Langenbacher R,Moshnikova A,Adochite RC,Andreev OA,Reshetnyak YK,Engelman DM

    更新日期:2014-11-21 00:00:00

  • Mechanism-Based Post-Translational Modification and Inactivation in Terpene Synthases.

    abstract::Terpenes are ubiquitous natural chemicals with diverse biological functions spanning all three domains of life. In specialized metabolism, the active sites of terpene synthases (TPSs) evolve in shape and reactivity to direct the biosynthesis of a myriad of chemotypes for organismal fitness. As most terpene biosynthesi...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.5b00539

    authors: Kersten RD,Diedrich JK,Yates JR 3rd,Noel JP

    更新日期:2015-11-20 00:00:00

  • Structure-Based Mutagenesis of Phycobiliprotein smURFP for Optoacoustic Imaging.

    abstract::Photo- or optoacoustics (OA) imaging is increasingly being used as a non-invasive imaging method that can simultaneously reveal structure and function in deep tissue. However, the most frequent transgenic OA labels are current fluorescent proteins that are not optimized for OA imaging. Thus, they lack OA signal streng...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.9b00299

    authors: Fuenzalida Werner JP,Mishra K,Huang Y,Vetschera P,Glasl S,Chmyrov A,Richter K,Ntziachristos V,Stiel AC

    更新日期:2019-09-20 00:00:00

  • Small molecule inhibitors of bromodomain-acetyl-lysine interactions.

    abstract::Bromodomains are protein modules that bind to acetylated lysine residues. Their interaction with histone proteins suggests that they function as "readers" of histone lysine acetylation, a component of the proposed "histone code". Bromodomain-containing proteins are often found as components of larger protein complexes...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb500996u

    authors: Brand M,Measures AR,Wilson BG,Cortopassi WA,Alexander R,Höss M,Hewings DS,Rooney TP,Paton RS,Conway SJ

    更新日期:2015-01-16 00:00:00

  • The Hidden Conformation of Lewis x, a Human Histo-Blood Group Antigen, Is a Determinant for Recognition by Pathogen Lectins.

    abstract::Histo-blood group epitopes are fucosylated branched oligosaccharides with well-defined conformations in solution that are recognized by receptors, such as lectins from pathogens. We report here the results of a series of experimental and computational endeavors revealing the unusual distortion of histo-blood group ant...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00333

    authors: Topin J,Lelimousin M,Arnaud J,Audfray A,Pérez S,Varrot A,Imberty A

    更新日期:2016-07-15 00:00:00

  • Structural and Functional Evidence Indicates Selective Oxygen Signaling in Caldanaerobacter subterraneus H-NOX.

    abstract::Acute and specific sensing of diatomic gas molecules is an essential facet of biological signaling. Heme nitric oxide/oxygen binding (H-NOX) proteins are a family of gas sensors found in diverse classes of bacteria and eukaryotes. The most commonly characterized bacterial H-NOX domains are from facultative anaerobes a...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00431

    authors: Hespen CW,Bruegger JJ,Phillips-Piro CM,Marletta MA

    更新日期:2016-08-19 00:00:00

  • A synthetic recursive "+1" pathway for carbon chain elongation.

    abstract::Nature uses four methods of carbon chain elongation for the production of 2-ketoacids, fatty acids, polyketides, and isoprenoids. Using a combination of quantum mechanical (QM) modeling, protein-substrate modeling, and protein and metabolic engineering, we have engineered the enzymes involved in leucine biosynthesis f...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb200313e

    authors: Marcheschi RJ,Li H,Zhang K,Noey EL,Kim S,Chaubey A,Houk KN,Liao JC

    更新日期:2012-04-20 00:00:00

  • Peripheral protein organization and its influence on lipid diffusion in biomimetic membranes.

    abstract::Protein organization on biomembranes and their dynamics are essential for cellular function. It is not clear, however, how protein binding may influence the assembly of underlying lipids or how the membrane structure leads to functional protein organization. Toward this goal, we investigated the effects of annexin a5 ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb900303s

    authors: Vats K,Knutson K,Hinderliter A,Sheets ED

    更新日期:2010-04-16 00:00:00

  • Reprogramming a Deubiquitinase into a Transamidase.

    abstract::Access to well-defined ubiquitin conjugates has been key to elucidating the biochemical functions of proteins in the ubiquitin signaling network. Yet, we have a poor understanding of how deubiquitinases and ubiquitin-binding proteins respond to ubiquitin modifications when anchored to a protein other than ubiquitin or...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.8b00759

    authors: Chang LH,Strieter ER

    更新日期:2018-09-21 00:00:00

  • Activation of the NLRP3 Inflammasome by Hyaboron, a New Asymmetric Boron-Containing Macrodiolide from the Myxobacterium Hyalangium minutum.

    abstract::A Natural Compound Library containing myxobacterial secondary metabolites was screened in murine macrophages for novel activators of IL-1β maturation and secretion. The most potent of three hits in total was a so far undescribed metabolite, which was identified from the myxobacterium Hyalangium minutum strain Hym3. Wh...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.8b00659

    authors: Surup F,Chauhan D,Niggemann J,Bartok E,Herrmann J,Keck M,Zander W,Stadler M,Hornung V,Müller R

    更新日期:2018-10-19 00:00:00

  • Structural Insights into the Interaction of Clinically Relevant Phosphorothioate mRNA Cap Analogs with Translation Initiation Factor 4E Reveal Stabilization via Electrostatic Thio-Effect.

    abstract::mRNA-based therapies and vaccines constitute a disruptive technology with the potential to revolutionize modern medicine. Chemically modified 5' cap structures have provided access to mRNAs with superior translational properties that could benefit the currently flourishing mRNA field. Prime examples of compounds that ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00864

    authors: Warminski M,Kowalska J,Nowak E,Kubacka D,Tibble R,Kasprzyk R,Sikorski PJ,Gross JD,Nowotny M,Jemielity J

    更新日期:2021-01-13 00:00:00

  • Design and characterization of an active site selective caspase-3 transnitrosating agent.

    abstract::The oxidative addition of nitric oxide (NO) to a thiol, S-nitrosation, is a focus of studies on cyclic guanosine monophosphate (cGMP)-independent NO signaling. S-Nitrosation of the catalytic cysteine of the caspase proteases has important effects on apoptosis and consequently has received attention. Here we report on ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb600393x

    authors: Mitchell DA,Morton SU,Marletta MA

    更新日期:2006-11-21 00:00:00

  • An Allosteric Inhibitor Scaffold Targeting the PIF-Pocket of Atypical Protein Kinase C Isoforms.

    abstract::There is a current and pressing need for improved cancer therapies. The use of small molecule kinase inhibitors and their application in combinatorial regimens represent an approach to personalized targeted cancer therapy. A number of AGC kinases, including atypical Protein Kinase C enzymes (PKCs), are validated drug ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00827

    authors: Arencibia JM,Fröhner W,Krupa M,Pastor-Flores D,Merker P,Oellerich T,Neimanis S,Schmithals C,Köberle V,Süß E,Zeuzem S,Stark H,Piiper A,Odadzic D,Schulze JO,Biondi RM

    更新日期:2017-02-17 00:00:00

  • Heavy Metals Induce Decline of Derivatives of 5-Methycytosine in Both DNA and RNA of Stem Cells.

    abstract::Toxic heavy metals have been considered to be harmful environmental contaminations. The molecular mechanisms of heavy-metals-induced cytotoxicity and carcinogenicity are still not well elucidated. Previous reports showed exposures to toxic heavy metals can cause a change of DNA cytosine methylation (5-methylcytosine, ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.7b00170

    authors: Xiong J,Liu X,Cheng QY,Xiao S,Xia LX,Yuan BF,Feng YQ

    更新日期:2017-06-16 00:00:00

  • A synthetic derivative of plant allylpolyalkoxybenzenes induces selective loss of motile cilia in sea urchin embryos.

    abstract::Polyalkoxybenzenes are plant components displaying a wide range of biological activities. In these studies, we synthesized apiol and dillapiol isoxazoline analogues of combretastatins and evaluated their effect on sea urchin embryos. We have shown that p-methoxyphenyl isoxazoline caused sea urchin embryo immobilizatio...

    journal_title:ACS chemical biology

    pub_type: 信件

    doi:10.1021/cb700163q

    authors: Semenova MN,Tsyganov DV,Yakubov AP,Kiselyov AS,Semenov VV

    更新日期:2008-02-15 00:00:00

  • Harnessing Fluorine-Sulfur Contacts and Multipolar Interactions for the Design of p53 Mutant Y220C Rescue Drugs.

    abstract::Many oncogenic mutants of the tumor suppressor p53 are conformationally unstable, including the frequently occurring Y220C mutant. We have previously developed several small-molecule stabilizers of this mutant. One of these molecules, PhiKan083, 1-(9-ethyl-9H-carbazole-3-yl)-N-methylmethanamine, binds to a mutation-in...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.6b00315

    authors: Bauer MR,Jones RN,Baud MG,Wilcken R,Boeckler FM,Fersht AR,Joerger AC,Spencer J

    更新日期:2016-08-19 00:00:00

  • Covalent-Fragment Screening of BRD4 Identifies a Ligandable Site Orthogonal to the Acetyl-Lysine Binding Sites.

    abstract::BRD4, a member of the bromodomain and extraterminal domain (BET) family, has emerged as a promising epigenetic target in cancer and inflammatory disorders. All reported BET family ligands bind within the bromodomain acetyl-lysine binding sites and competitively inhibit BET protein interaction with acetylated chromatin...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00058

    authors: Olp MD,Sprague DJ,Goetz CJ,Kathman SG,Wynia-Smith SL,Shishodia S,Summers SB,Xu Z,Statsyuk AV,Smith BC

    更新日期:2020-04-17 00:00:00

  • Using small molecules and chemical genetics to interrogate signaling networks.

    abstract::The limited clinical success of therapeutics targeting cellular signaling processes is due to multiple factors, including off-target effects and complex feedback regulation encoded within the signaling network. To understand these effects, chemical proteomics and chemical genetics tools have been developed to map the ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章,评审

    doi:10.1021/cb1002834

    authors: Carlson SM,White FM

    更新日期:2011-01-21 00:00:00

  • Traceless labeling of glycoproteins and its application to the study of glycoprotein-protein interactions.

    abstract::A new chemical method for the traceless labeling of glycoproteins with synthetic boronic acid (BA)-tosyl probes was successfully developed. The BA moiety acts as an affinity head to direct the formation of a cyclic boronate diester with the diol groups of glycans. Following this step, the electrophilic tosyl group is ...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/cb400631w

    authors: Yang YL,Lee YP,Yang YL,Lin PC

    更新日期:2014-02-21 00:00:00

  • HIV-1 Env-Dependent Cell Killing by Bifunctional Small-Molecule/Peptide Conjugates.

    abstract::A strategy has been established for the synthesis of a family of bifunctional HIV-1 inhibitor covalent conjugates with the potential to bind simultaneously to both the gp120 and gp41 subunits of the HIV-1 envelope glycoprotein trimeric complex (Env). One component of the conjugates is derived from BNM-III-170, a small...

    journal_title:ACS chemical biology

    pub_type: 杂志文章

    doi:10.1021/acschembio.0c00888

    authors: Gaffney A,Nangarlia A,Ang CG,Gossert S,Rashad Ahmed AA,Hossain MA,Abrams CF,Smith AB 3rd,Chaiken I

    更新日期:2021-01-15 00:00:00