Autoinhibition of ETV6 (TEL) DNA binding: appended helices sterically block the ETS domain.

Abstract:

:ETV6 (or TEL), a transcriptional repressor belonging to the ETS family, is frequently involved in chromosomal translocations linked with human cancers. It displays a DNA-binding mode distinct from other ETS proteins due to the presence of a self-associating PNT domain. In this study, we used NMR spectroscopy to dissect the structural and dynamic bases for the autoinhibition of ETV6 DNA binding by sequences C-terminal to its ETS domain. The C-terminal inhibitory domain (CID) contains two helices, H4 and H5, which sterically block the DNA-binding interface of the ETS domain. Importantly, these appended helices are only marginally stable as revealed by amide hydrogen exchange and (15)N relaxation measurements. The CID is thus poised to undergo a facile conformational change as required for DNA binding. The CID also dampens millisecond timescale motions of the ETS domain hypothesized to be critical for the recognition of specific ETS target sequences. This work illustrates the use of appended sequences on conserved structural domains to generate biological diversity and complements previous studies of the allosteric mechanism of ETS1 autoinhibition to reveal both common and divergent features underlying the regulation of DNA binding by ETS transcription factors.

journal_name

J Mol Biol

authors

Coyne HJ 3rd,De S,Okon M,Green SM,Bhachech N,Graves BJ,McIntosh LP

doi

10.1016/j.jmb.2012.05.010

subject

Has Abstract

pub_date

2012-08-03 00:00:00

pages

67-84

issue

1

eissn

0022-2836

issn

1089-8638

pii

S0022-2836(12)00395-6

journal_volume

421

pub_type

杂志文章
  • The structure of Sif2p, a WD repeat protein functioning in the SET3 corepressor complex.

    abstract::In Saccharomyces cerevisiae, the SIF2 gene product is an integral component of the Set3 complex (SET3C), an assembly of proteins with some homology to the human SMRT and N-CoR corepressor complexes. SET3C has histone deacetylase activity that is responsible for repressing a set of meiotic genes. We have determined the...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2005.06.025

    authors: Cerna D,Wilson DK

    更新日期:2005-08-26 00:00:00

  • UHRF1 double tudor domain and the adjacent PHD finger act together to recognize K9me3-containing histone H3 tail.

    abstract::Human multi-domain-containing protein UHRF1 has recently been extensively characterized as a key epigenetic regulator for maintaining DNA methylation patterns. UHRF1 SRA domain preferentially binds to hemimethylated CpG sites, and double Tudor domain has been implicated in recognizing H3K9me3 mark, but the role of the...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2011.11.012

    authors: Xie S,Jakoncic J,Qian C

    更新日期:2012-01-13 00:00:00

  • Torque-speed relationships of Na+-driven chimeric flagellar motors in Escherichia coli.

    abstract::The bacterial flagellar motor is a rotary motor in the cell envelope of bacteria that couples ion flow across the cytoplasmic membrane to torque generation by independent stators anchored to the cell wall. The recent observation of stepwise rotation of a Na(+)-driven chimeric motor in Escherichia coli promises to reve...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.12.023

    authors: Inoue Y,Lo CJ,Fukuoka H,Takahashi H,Sowa Y,Pilizota T,Wadhams GH,Homma M,Berry RM,Ishijima A

    更新日期:2008-03-07 00:00:00

  • Only centromeres can supply the partition system required for ARS function in the yeast Yarrowia lipolytica.

    abstract::Autonomously replicating sequences (ARSs) in the yeast Yarrowia lipolytica require two components: an origin of replication (ORI) and centromere (CEN) DNA, both of which are necessary for extrachromosomal maintenance. To investigate this cooperation in more detail, we performed a screen for genomic sequences able to c...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2000.4300

    authors: Vernis L,Poljak L,Chasles M,Uchida K,Casarégola S,Käs E,Matsuoka M,Gaillardin C,Fournier P

    更新日期:2001-01-12 00:00:00

  • Crystal structure of ferric Aplysia limacina myoglobin at 2 X 0 A resolution.

    abstract::The three-dimensional structure of ferric myoglobin from the mollusc Aplysia limacina has been refined at 2 X 0 A resolution. The crystallographic R factor, calculated at this stage, is 0 X 194. Despite its high content of apolar residues (both aromatic and aliphatic), Aplysia limacina myoglobin, which contains only o...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(85)90285-2

    authors: Bolognesi M,Coda A,Gatti G,Ascenzi P,Brunori M

    更新日期:1985-05-05 00:00:00

  • Conformational study of 13C-enriched fibroin in the solid state, using the cross polarization nuclear magnetic resonance method.

    abstract::Silk fibroin with the alanyl carboxyl carbon enriched with 13C was obtained by giving a diet containing 13C-enriched alanine to the larvae of Bombyx mori and Antheraea pernyi at the fifth instar. Sericin-free fibroin fibers were prepared from cocoons, and gut was made from the liquid silk in the gland. The final 13C c...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(86)90414-6

    authors: Fujiwara T,Kobayashi Y,Kyogoku Y,Kataoka K

    更新日期:1986-01-05 00:00:00

  • Alternative splicing of an amino-terminal PEVK-like region generates multiple isoforms of Drosophila projectin.

    abstract::Drosophila projectin is an extremely large protein found within the muscle sarcomeric unit, parallel with the actin and myosin filaments. Projectin has been suggested as the elastic component of C-filaments in insect indirect flight muscles, which is consistent with its localization from the Z band to the tip of the A...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.5115

    authors: Southgate R,Ayme-Southgate A

    更新日期:2001-11-09 00:00:00

  • Investigating the Effect of Chain Connectivity on the Folding of a Beta-Sheet Protein On and Off the Ribosome.

    abstract::Determining the relationship between protein folding pathways on and off the ribosome remains an important area of investigation in biology. Studies on isolated domains have shown that alteration of the separation of residues in a polypeptide chain, while maintaining their spatial contacts, may affect protein stabilit...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2018.10.011

    authors: Marsden AP,Hollins JJ,O'Neill C,Ryzhov P,Higson S,Mendonça CATF,Kwan TO,Kwa LG,Steward A,Clarke J

    更新日期:2018-12-07 00:00:00

  • Functional significance of arginine 15 in the active site of human class alpha glutathione transferase A1-1.

    abstract::Arg15 is a conserved active-site residue in class Alpha glutathione transferases. X-ray diffraction studies of human glutathione transferase A1-1 have shown that N epsilon of this amino acid residue is adjacent to the sulfur atom of a glutathione derivative bound to the active site, suggesting the presence of a hydrog...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(05)80154-8

    authors: Björnestedt R,Stenberg G,Widersten M,Board PG,Sinning I,Jones TA,Mannervik B

    更新日期:1995-04-07 00:00:00

  • Wild-type alpha 1-antitrypsin is in the canonical inhibitory conformation.

    abstract::alpha 1-Antitrypsin is the archetypal member of the serine proteinase inhibitor or serpin superfamily. Members of the family show structural homology based on a dominant A beta-sheet and a mobile reactive centre loop. Our recent crystal structure of alpha 1-antitrypsin stabilized with a point mutation showed the loop ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章,评审

    doi:10.1006/jmbi.1997.1458

    authors: Elliott PR,Abrahams JP,Lomas DA

    更新日期:1998-01-23 00:00:00

  • Parallel and antiparallel Holliday junctions differ in structure and stability.

    abstract::Two Holliday junction analogs, JA and JP, containing identical base-paired arms have been constructed from oligonucleotides. The former is constrained to adopt an antiparallel Sigal-Alberts structure, and the latter a parallel structure, by means of single strand d(T)9 tethers. We evaluate here the free energy differe...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(91)90942-y

    authors: Lu M,Guo Q,Seeman NC,Kallenbach NR

    更新日期:1991-10-20 00:00:00

  • Complete assignment of the 1H nuclear magnetic resonance spectrum of French bean plastocyanin. Sequential resonance assignments, secondary structure and global fold.

    abstract::Sequence-specific proton nuclear magnetic resonance (n.m.r.) assignments for all 99 amino acid residues of French bean Cu(I) plastocyanin are described. The assignments were made using standard sequential assignment procedures and were greatly facilitated by the availability of complete spin system assignments. The ch...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(88)90291-4

    authors: Chazin WJ,Wright PE

    更新日期:1988-08-05 00:00:00

  • Weighting aligned protein or nucleic acid sequences to correct for unequal representation.

    abstract::Aligned sequences from the same family (e.g. the haemoglobins) are seldom representative of the entire family. This is because (1) the sequence databases are heavily skewed toward a small number of organisms and (2) only a minute fraction of all the different family members have been sequenced. For many applications, ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/S0022-2836(99)80003-5

    authors: Sibbald PR,Argos P

    更新日期:1990-12-20 00:00:00

  • Antibody-antigen interactions: contact analysis and binding site topography.

    abstract::We have analysed antigen-contacting residues and combining site shape in the antibody Fv and Fab crystal structures now available from the Protein Data Bank. Antigen-contacting propensities are presented for each antibody residue, allowing a new definition for the complementarity determining regions (CDRs) to be propo...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1996.0548

    authors: MacCallum RM,Martin AC,Thornton JM

    更新日期:1996-10-11 00:00:00

  • Role of the hydrophobic effect in stability of site-specific protein-DNA complexes.

    abstract::The site-specific binding interaction of lac repressor with a symmetric operator sequence and of EcoRI endonuclease with its specific recognition site both exhibit a characteristic dependence of equilibrium binding constant (Kobs) on temperature, in which Kobs attains a relative maximum in the physiologically relevant...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(89)90608-6

    authors: Ha JH,Spolar RS,Record MT Jr

    更新日期:1989-10-20 00:00:00

  • Predicting the functional consequences of non-synonymous single nucleotide polymorphisms: structure-based assessment of amino acid variation.

    abstract::We have developed a formalism and a computational method for analyzing the potential functional consequences of non-synonymous single nucleotide polymorphisms. Our approach uses a structural model and phylogenetic information to derive a selection of structure and sequence-based features serving as indicators of an am...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.4510

    authors: Chasman D,Adams RM

    更新日期:2001-03-23 00:00:00

  • Crystal structure of Escherichia coli thioesterase I/protease I/lysophospholipase L1: consensus sequence blocks constitute the catalytic center of SGNH-hydrolases through a conserved hydrogen bond network.

    abstract::Escherichia coli thioesterase I (TAP) is a multifunctional enzyme possessing activities of thioesterase, esterase, arylesterase, protease, and lysophospholipase. In particular, TAP has stereoselectivity for amino acid derivative substrates, hence it is useful for the kinetic resolution of racemic mixtures of industria...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(03)00637-5

    authors: Lo YC,Lin SC,Shaw JF,Liaw YC

    更新日期:2003-07-11 00:00:00

  • Crystals of threonyl-tRNA synthetase from Thermus thermophilus. Preliminary crystallographic data.

    abstract::Crystals have been obtained of threonyl-tRNA synthetase from the extreme thermophile Thermus thermophilus using sodium formate as a precipitant. The crystals are very stable and diffract to at least 2.4 A. The crystals belong to space group P2(1)2(1)2(1) with cell parameters a = 61.4 A, b = 156.1 A, c = 177.3 A. ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(90)90337-L

    authors: Garber MB,Yaremchuk AD,Tukalo MA,Egorova SP,Fomenkova NP,Nikonov SV

    更新日期:1990-08-20 00:00:00

  • NMR structure of the amino-terminal domain of the lambda integrase protein in complex with DNA: immobilization of a flexible tail facilitates beta-sheet recognition of the major groove.

    abstract::The integrase protein (Int) from bacteriophage lambda is the archetypal member of the tyrosine recombinase family, a large group of enzymes that rearrange DNA in all domains of life. Int catalyzes the insertion and excision of the viral genome into and out of the Escherichia coli chromosome. Recombination transpires w...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2009.03.041

    authors: Fadeev EA,Sam MD,Clubb RT

    更新日期:2009-05-15 00:00:00

  • Regulation of Mitochondrial Electron Transport Chain Assembly.

    abstract::Mitochondrial function depends on the correct synthesis, transport, and assembly of proteins and cofactors of the electron transport chain. The initial idea that the respiratory chain protein complexes (RCCs) were independent structures in the inner mitochondrial membrane evolved after the identification of higher qua...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jmb.2018.09.016

    authors: Cogliati S,Lorenzi I,Rigoni G,Caicci F,Soriano ME

    更新日期:2018-12-07 00:00:00

  • S4-alpha mRNA translation regulation complex. II. Secondary structures of the RNA regulatory site in the presence and absence of S4.

    abstract::The secondary structure of the Escherichia coli alpha mRNA leader sequence has been determined using nucleases specific for single- or double-stranded RNA. Three different length alpha RNA fragments were studied at 0 degrees C and 37 degrees C. A very stable eight base-pair helix forms upstream from the ribosome initi...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(87)90693-0

    authors: Deckman IC,Draper DE

    更新日期:1987-07-20 00:00:00

  • M-LDH serves as a regulatory subunit of the cytosolic substrate-channelling complex in vivo.

    abstract::Nucleoside diphosphate kinase A (NDPK-A) regulates the alpha1 isoform of the AMP-activated protein kinase (AMPK alpha1) selectively, independent of [AMP] and surrounding [ATP], by a process termed substrate channelling. Here, we show, using a range of empirically validated biochemical techniques, that the muscle form ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.05.081

    authors: Jovanović S,Jovanović A,Crawford RM

    更新日期:2007-08-10 00:00:00

  • Structural analysis of yeast HSF by site-specific crosslinking.

    abstract::We have introduced cysteine substitutions into the yeast HSF1 gene at a variety of locations. Most have no phenotypic effect, and therefore provide site-specific probes for thiol-specific reagents. Crosslinking of single mutants identifies locations where equivalent regions of individual monomers can approach each oth...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2000.4096

    authors: Bonner JJ,Chen D,Storey K,Tushan M,Lea K

    更新日期:2000-09-22 00:00:00

  • Structure of AP205 Coat Protein Reveals Circular Permutation in ssRNA Bacteriophages.

    abstract::AP205 is a single-stranded RNA bacteriophage that has a coat protein sequence not similar to any other known single-stranded RNA phage. Here, we report an atomic-resolution model of the AP205 virus-like particle based on a crystal structure of an unassembled coat protein dimer and a cryo-electron microscopy reconstruc...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2016.08.025

    authors: Shishovs M,Rumnieks J,Diebolder C,Jaudzems K,Andreas LB,Stanek J,Kazaks A,Kotelovica S,Akopjana I,Pintacuda G,Koning RI,Tars K

    更新日期:2016-10-23 00:00:00

  • Protein-protein interaction regulates proteins' mechanical stability.

    abstract::Elastomeric proteins are molecular springs found not only in a variety of biological machines and tissues, but also in biomaterials of superb mechanical properties. Regulating the mechanical stability of elastomeric proteins is not only important for a range of biological processes, but also critical for the use of en...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2008.03.046

    authors: Cao Y,Yoo T,Zhuang S,Li H

    更新日期:2008-05-16 00:00:00

  • Structural determinants of natriuretic peptide receptor specificity and degeneracy.

    abstract::Cardiovascular homeostasis and blood pressure regulation are reliant, in part, on interactions between natriuretic peptide (NP) hormones and natriuretic peptide receptors (NPR). The C-type NPR (NPR-C) is responsible for clearance of NP hormones from the circulation, and displays a cross-reactivity for all NP hormones ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2006.06.060

    authors: He XL,Dukkipati A,Garcia KC

    更新日期:2006-08-25 00:00:00

  • Structural basis for the higher Ca(2+)-activation of the regulated actin-activated myosin ATPase observed with Dictyostelium/Tetrahymena actin chimeras.

    abstract::Replacement of residues 228-230 or 228-232 of subdomain 4 in Dictyostelium actin with the corresponding Tetrahymena sequence (QTA to KAY replacement: half chimera-1; QTAAS to KAYKE replacement: full chimera) leads to a higher Ca(2+)-activation of the regulated acto-myosin subfragment-1 ATPase activity. The ratio of AT...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1999.3467

    authors: Matsuura Y,Stewart M,Kawamoto M,Kamiya N,Saeki K,Yasunaga T,Wakabayashi T

    更新日期:2000-02-18 00:00:00

  • Conservation of organization in the specificity polypeptides of two families of type I restriction enzymes.

    abstract::We have identified the recognition sequence for the Citrobacter freundii restriction endonuclease CfrA, a member of the A-family of type I R-M enzymes. This bipartite target sequence differs in both its components from those of other type I enzymes. We determined the nucleotide sequence of its specificity gene (hsdS) ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(89)90001-6

    authors: Kannan P,Cowan GM,Daniel AS,Gann AA,Murray NE

    更新日期:1989-10-05 00:00:00

  • Immunoglobulin G1 Fc domain motions: implications for Fc engineering.

    abstract::The fragment crystallizable (Fc) region links the key pathogen identification and destruction properties of immunoglobulin G (IgG). Pathogen opsonization positions Fcs to activate pro-inflammatory Fcγ receptors (FcγRs) on immune cells. The cellular response and committal to a damaging, though protective, immune respon...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2014.01.011

    authors: Frank M,Walker RC,Lanzilotta WN,Prestegard JH,Barb AW

    更新日期:2014-04-17 00:00:00

  • The Mechanism and Function of Group II Chaperonins.

    abstract::Protein folding in the cell requires the assistance of enzymes collectively called chaperones. Among these, the chaperonins are 1-MDa ring-shaped oligomeric complexes that bind unfolded polypeptides and promote their folding within an isolated chamber in an ATP-dependent manner. Group II chaperonins, found in archaea ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jmb.2015.04.013

    authors: Lopez T,Dalton K,Frydman J

    更新日期:2015-09-11 00:00:00