The cardiovascular risk of healthy individuals studied by NMR metabonomics of plasma samples.

Abstract:

:The identification and the present wide acceptance of cardiovascular risk factors such as age, sex, hypertension, hyperlipidemia, smoking, obesity, diabetes, and physical inactivity have led to dramatic reductions in cardiovascular morbidity and mortality. However, novel risk predictors present opportunities to identify more patients at risk and to more accurately define the biochemical signature of that risk. In this paper, we present a comprehensive metabonomic analysis of 864 plasma samples from healthy volunteers, through Nuclear Magnetic Resonance (NMR) and multivariate statistical analysis (regression and classification). We have found that subjects that are classified as at high or at low risk using the common clinical markers can also be discriminated using NMR metabonomics. This discrimination is not only due to common markers (such as total cholesterol, triglycerides, LDL, HDL), but also to (p < 0.05 after Bonferroni correction) other metabolites (e.g., 3-hydroxybutyrate, α-ketoglutarate, threonine, dimethylglycine) previously not associated with cardiovascular diseases.

journal_name

J Proteome Res

authors

Bernini P,Bertini I,Luchinat C,Tenori L,Tognaccini A

doi

10.1021/pr200452j

subject

Has Abstract

pub_date

2011-11-04 00:00:00

pages

4983-92

issue

11

eissn

1535-3893

issn

1535-3907

journal_volume

10

pub_type

杂志文章
  • pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization.

    abstract::MS-based de novo peptide sequencing has been improved remarkably with significant development of mass-spectrometry and computational approaches but still lacks quality-control methods. Here we proposed a novel algorithm pSite to evaluate the confidence of each amino acid rather than the full-length peptides obtained b...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00428

    authors: Yang H,Chi H,Zhou WJ,Zeng WF,Liu C,Wang RM,Wang ZW,Niu XN,Chen ZL,He SM

    更新日期:2018-01-05 00:00:00

  • Different residues in channel turret determining the selectivity of ADWX-1 inhibitor peptide between Kv1.1 and Kv1.3 channels.

    abstract::The low selectivity of Kv1 peptide inhibitors for specific isoforms makes them poor candidates for the development of theraputics. Using combined approaches, we showed that the Kv1 turret is the critical determinant for ADWX-1 peptide inhibitor selectivity of Kv1.3 over Kv1.1. Mutation of Kv1.1 turret residues to matc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800494a

    authors: Yin SJ,Jiang L,Yi H,Han S,Yang DW,Liu ML,Liu H,Cao ZJ,Wu YL,Li WX

    更新日期:2008-11-01 00:00:00

  • Identification of natural MHC class II presented phosphopeptides and tumor-derived MHC class I phospholigands.

    abstract::MHC molecules present protein-derived peptides to T lymphocytes. By developing TiO2-based microcentrifugation columns, we identified the first phosphorylated MHC class I ligands from tumor tissue (renal cell carcinoma) and, by comparison to healthy renal tissue, found one Brf1-derived ligand as potentially tumor-assoc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800937k

    authors: Meyer VS,Drews O,Günder M,Hennenlotter J,Rammensee HG,Stevanovic S

    更新日期:2009-07-01 00:00:00

  • Comprehensive royal jelly (RJ) proteomics using one- and two-dimensional proteomics platforms reveals novel RJ proteins and potential phospho/glycoproteins.

    abstract::Royal jelly (RJ) is an exclusive food for queen honey bee (Apis mellifera L.) that is synthesized and secreted by young worker bees. RJ is also widely used in medical products, cosmetics, and as health foods. However, little is known about RJ functionality and the total protein components, although recent research is ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800061j

    authors: Furusawa T,Rakwal R,Nam HW,Shibato J,Agrawal GK,Kim YS,Ogawa Y,Yoshida Y,Kouzuma Y,Masuo Y,Yonekura M

    更新日期:2008-08-01 00:00:00

  • Differentiating proteomic biomarkers in breast cancer by laser capture microdissection and MALDI MS.

    abstract::We assessed proteomic patterns in breast cancer using MALDI MS and laser capture microdissected cells. Protein and peptide expression in invasive mammary carcinoma versus normal mammary epithelium and estrogen-receptor positive versus estrogen-receptor negative tumors were compared. Biomarker candidates were identifie...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7008109

    authors: Sanders ME,Dias EC,Xu BJ,Mobley JA,Billheimer D,Roder H,Grigorieva J,Dowsett M,Arteaga CL,Caprioli RM

    更新日期:2008-04-01 00:00:00

  • Methamphetamine-induced sensitization is associated with alterations to the proteome of the prefrontal cortex: implications for the maintenance of psychotic disorders.

    abstract::Repeat administration of psychostimulants, such as methamphetamine, produces a progressive increase in locomotor activity (behavioral sensitization) in rodents that is believed to represent the underlying neurochemical changes driving psychoses. Alterations to the prefrontal cortex (PFC) are suggested to mediate the e...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500719f

    authors: Wearne TA,Mirzaei M,Franklin JL,Goodchild AK,Haynes PA,Cornish JL

    更新日期:2015-01-02 00:00:00

  • A two-dimensional array for simultaneous sequencing of N- and o-glycans and their glycoforms on specific glycosylation sites.

    abstract::Glycans play major roles in living organisms. Thus, essential information is required on diverse glycans, their location, and moieties in proteins, as well as for technology in a high-throughput manner, for improving functional glycomics. In the present study, we describe a new approach involving a 2-D array, which ha...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070392+

    authors: Tzur Y,Markovich A,Lichtenstein RG

    更新日期:2008-03-01 00:00:00

  • Systematic Analysis of the Lysine Acetylome in Candida albicans.

    abstract::Candida albicans (C. albicans) is a worldwide cause of fungal infectious diseases. As a general post-translational modification (PTM), lysine acetylation of proteins play an important regulatory role in almost every cell. In our research, we used a high-resolution proteomic technique (LC-MS/MS) to present the comprehe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00052

    authors: Zhou X,Qian G,Yi X,Li X,Liu W

    更新日期:2016-08-05 00:00:00

  • Comparative proteomics analysis of Bacillus amyloliquefaciens SQR9 revealed the key proteins involved in in situ root colonization.

    abstract::Bacillus Amyloliquefaciens SQR9 is a well-investigated plant growth-promoting rhizobacteria with strong root colonization capability. To identify the key proteins involved in in situ root colonization and biofilm formation, the proteomic profiles of planktonic and root colonized SQR9 cells were compared. A total of 75...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500565m

    authors: Qiu M,Xu Z,Li X,Li Q,Zhang N,Shen Q,Zhang R

    更新日期:2014-12-05 00:00:00

  • DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra.

    abstract::De novo sequencing is a popular technique in proteomics for identifying peptides from tandem mass spectra without having to rely on a protein sequence database. Despite the strong potential of de novo sequencing algorithms, their adoption threshold remains quite high. We here present a user-friendly and lightweight gr...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4008078

    authors: Muth T,Weilnböck L,Rapp E,Huber CG,Martens L,Vaudel M,Barsnes H

    更新日期:2014-02-07 00:00:00

  • Unbiased False Discovery Rate Estimation for Shotgun Proteomics Based on the Target-Decoy Approach.

    abstract::Target-decoy approach (TDA) is the dominant strategy for false discovery rate (FDR) estimation in mass-spectrometry-based proteomics. One of its main applications is direct FDR estimation based on counting of decoy matches above a certain score threshold. The corresponding equations are widely employed for filtering o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00144

    authors: Levitsky LI,Ivanov MV,Lobas AA,Gorshkov MV

    更新日期:2017-02-03 00:00:00

  • Extended Snake Venomics by Top-Down In-Source Decay: Investigating the Newly Discovered Anatolian Meadow Viper Subspecies, Vipera anatolica senliki.

    abstract::Herein, we report on the venom proteome of Vipera anatolica senliki, a recently discovered and hitherto unexplored subspecies of the critically endangered Anatolian meadow viper endemic to the Antalya Province of Turkey. Integrative venomics, including venom gland transcriptomics as well as complementary bottom-up and...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00869

    authors: Hempel BF,Damm M,Mrinalini,Göçmen B,Karış M,Nalbantsoy A,Kini RM,Süssmuth RD

    更新日期:2020-04-03 00:00:00

  • MPK4 Phosphorylation Dynamics and Interacting Proteins in Plant Immunity.

    abstract::Arabidopsis MAP kinase 4 (MPK4) has been proposed to be a negative player in plant immunity, and it is also activated by pathogen-associated molecular patterns (PAMPs), such as flg22. The molecular mechanisms by which MPK4 is activated and regulates plant defense remain elusive. In this study, we investigated Arabidop...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00345

    authors: Zhang T,Schneider JD,Lin C,Geng S,Ma T,Lawrence SR,Dufresne CP,Harmon AC,Chen S

    更新日期:2019-03-01 00:00:00

  • A novel negative regulation mechanism of bacterial outer membrane proteins in response to antibiotic resistance.

    abstract::Although some outer membrane (OM) proteins involved in antibiotic resistance have been previously reported, the OM proteins regulating chlortetracycline (CTC) resistance are largely unknown. In this study, we employed a subproteomics approach to identify altered OM proteins of Escherichia coli in response to CTC expos...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100740w

    authors: Lin XM,Yang JN,Peng XX,Li H

    更新日期:2010-11-05 00:00:00

  • Suppression of peptide sample losses in autosampler vials.

    abstract::Protein or peptide sample losses could accompany all steps of the proteomic analysis workflow. We focused on suppression of sample adsorptive losses during sample storage in autosampler vials. We examined suppression capabilities of six different sample injection solutions and seven types of autosampler vial surfaces ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400183v

    authors: Stejskal K,Potěšil D,Zdráhal Z

    更新日期:2013-06-07 00:00:00

  • Role of proteomics to differentiate between benign and potentially malignant pancreatic cysts.

    abstract::Pancreatic cystic neoplasms represent 10-15% of primary cystic masses of the pancreas. While pancreatic cysts are detected with an increasing frequency due to the use of advanced imaging modalities in clinical practice, the diagnosis of pancreatic cystic neoplasms remains unsatisfactory because available diagnostic te...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2000557

    authors: Cuoghi A,Farina A,Z'graggen K,Dumonceau JM,Tomasi A,Hochstrasser DF,Genevay M,Lescuyer P,Frossard JL

    更新日期:2011-05-06 00:00:00

  • Global metabolite profiling of human colorectal cancer xenografts in mice using HPLC-MS/MS.

    abstract::Reversed-phase gradient LC-MS was used to perform untargeted metabonomic analysis on extracts of human colorectal cancer (CRC) cell lines (COLO 205, HT-29, HCT 116 and SW620) subcutaneously implanted into age-matched athymic nude male mice to study small molecule metabolic profiles and examine possible correlations wi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400260h

    authors: Loftus NJ,Lai L,Wilkinson RW,Odedra R,Wilson ID,Barnes AJ

    更新日期:2013-06-07 00:00:00

  • One-step sample concentration, purification, and albumin depletion method for urinary proteomics.

    abstract::Workflows in urinary proteomics studies are often complex and require many steps to enrich, purify, deplete, and separate the complex mixture. Many of these methods are laborious, are time-consuming, and have the potential for error. Although individual steps of these methods have been previously studied, their downst...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100924s

    authors: Vaezzadeh AR,Briscoe AC,Steen H,Lee RS

    更新日期:2010-11-05 00:00:00

  • NMR-based metabolomic analysis of the molecular pathogenesis of therapy-related myelodysplasia/acute myeloid leukemia.

    abstract::Hematopoietic stem cell transplantation is the oldest and most successful form of stem cell therapy. High dose therapy (HDT) followed by hematopoietic stem cell transplantation allows physicians to administer increased amounts of chemotherapy and/or radiation while minimizing negative side effects such as damage to bl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200200y

    authors: Cano KE,Li L,Bhatia S,Bhatia R,Forman SJ,Chen Y

    更新日期:2011-06-03 00:00:00

  • Compositional Proteomics: Effects of Spatial Constraints on Protein Quantification Utilizing Isobaric Tags.

    abstract::Mass spectrometry (MS) has become an accessible tool for whole proteome quantitation with the ability to characterize protein expression across thousands of proteins within a single experiment. A subset of MS quantification methods (e.g., SILAC and label-free) monitor the relative intensity of intact peptides, where t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00699

    authors: O'Brien JJ,O'Connell JD,Paulo JA,Thakurta S,Rose CM,Weekes MP,Huttlin EL,Gygi SP

    更新日期:2018-01-05 00:00:00

  • (1)H NMR Spectroscopy of Fecal Extracts Enables Detection of Advanced Colorectal Neoplasia.

    abstract::Colorectal cancer (CRC) is a growing cause of mortality in developing countries, warranting investigation into its etiopathogenesis and earlier diagnosis. Here, we investigated the fecal metabolic phenotype of patients with advanced colorectal neoplasia and controls using (1)H-nuclear magnetic resonance (NMR) spectros...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00277

    authors: Amiot A,Dona AC,Wijeyesekera A,Tournigand C,Baumgaertner I,Lebaleur Y,Sobhani I,Holmes E

    更新日期:2015-09-04 00:00:00

  • A Shotgun Proteomic Approach Reveals That Fe Deficiency Causes Marked Changes in the Protein Profiles of Plasma Membrane and Detergent-Resistant Microdomain Preparations from Beta vulgaris Roots.

    abstract::In the present study we have used label-free shotgun proteomic analysis to examine the effects of Fe deficiency on the protein profiles of highly pure sugar beet root plasma membrane (PM) preparations and detergent-resistant membranes (DRMs), the latter as an approach to study microdomains. Altogether, 545 proteins we...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00026

    authors: Gutierrez-Carbonell E,Takahashi D,Lüthje S,González-Reyes JA,Mongrand S,Contreras-Moreira B,Abadía A,Uemura M,Abadía J,López-Millán AF

    更新日期:2016-08-05 00:00:00

  • Evidence for novel tomato seed allergens: IgE-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling.

    abstract::Tomato fruit and seed allergens were detected by IgE-immunoblotting using sera from 18 adult tomato-sensitized patients selected based on a positive history skin prick test (SPT) and specific Immunglobulin (Ig) E-levels. Isolated tomato seed total protein showed high SPT activity comparable or even higher than tomato ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800186d

    authors: Bässler OY,Weiss J,Wienkoop S,Lehmann K,Scheler C,Dölle S,Schwarz D,Franken P,George E,Worm M,Weckwerth W

    更新日期:2009-03-01 00:00:00

  • A new workflow for proteomic analysis of urinary exosomes and assessment in cystinuria patients.

    abstract::Cystinuria is a purely renal, rare genetic disease caused by mutations in cystine transporter genes and characterized by defective cystine reabsorption leading to kidney stones. In 14% of cases, patients undergo nephrectomy, but given the difficulty to predict the evolution of the disease, the identification of marker...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501003q

    authors: Bourderioux M,Nguyen-Khoa T,Chhuon C,Jeanson L,Tondelier D,Walczak M,Ollero M,Bekri S,Knebelmann B,Escudier E,Escudier B,Edelman A,Guerrera IC

    更新日期:2015-01-02 00:00:00

  • ¹H NMR metabolic profiling of plasma reveals additional phenotypes in knockout mouse models.

    abstract::The International Mouse Phenotyping Consortium program has been established to ascribe biological functions to systematically knocked-out (KO) genes by in vivo and ex vivo phenotyping. The plasma clinical chemistry screen includes an assessment of liver, kidney, and bone function and provides a basic lipid profile and...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501039k

    authors: Probert F,Rice P,Scudamore CL,Wells S,Williams R,Hough TA,Cox IJ

    更新日期:2015-05-01 00:00:00

  • Proteome profile of cytosolic component of zebrafish liver generated by LC-ESI MS/MS combined with trypsin digestion and microwave-assisted acid hydrolysis.

    abstract::The zebrafish genome has recently been sequenced and annotated allowing for high-throughput proteomic analysis. Here, we report for the first time a proteomic subset of zebrafish liver, an important organ for metabolizing toxins. Using a newly developed analytical procedure, we have identified 1204 proteins from the c...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060367o

    authors: Wang N,Mackenzie L,De Souza AG,Zhong H,Goss G,Li L

    更新日期:2007-01-01 00:00:00

  • Malonylome Analysis Reveals the Involvement of Lysine Malonylation in Metabolism and Photosynthesis in Cyanobacteria.

    abstract::As a recently validated reversible post translational modification, lysine malonylation regulates diverse cellular processes from bacteria to mammals, but its existence and function in photosynthetic organisms remain unknown. Cyanobacteria are the most ancient group of photosynthetic prokaryotes and contribute about 5...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00017

    authors: Ma Y,Yang M,Lin X,Liu X,Huang H,Ge F

    更新日期:2017-05-05 00:00:00

  • Porphyromonas gingivalis Gingipains Display Transpeptidation Activity.

    abstract::Porphyromonas gingivalis is a keystone periodontal pathogen that has been associated with autoimmune disorders. The cell surface proteases Lys-gingipain (Kgp) and Arg-gingipains (RgpA and RgpB) are major virulence factors, and their proteolytic activity is enhanced by small peptides such as glycylglycine (GlyGly). The...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00286

    authors: Zhang L,Veith PD,Huq NL,Chen YY,Seers CA,Cross KJ,Gorasia DG,Reynolds EC

    更新日期:2018-08-03 00:00:00

  • The effects of rosiglitazone and high glucose on protein expression in endothelial cells.

    abstract::Rosiglitazone is a thiazolidinedione used to treat insulin resistance in diabetes. Although thiazolidinediones may also exert cardiovascular effects, contrasting results were reported. Favorable effects were shown for pioglitazone, whereas adverse reactions were suspected for rosiglitazone. Therefore, a reassessment o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr900435z

    authors: Millioni R,Puricelli L,Iori E,Arrigoni G,Tessari P

    更新日期:2010-01-01 00:00:00

  • Distinguishing between Spectral Clustering and Cluster Analysis of Mass Spectra.

    abstract::The term "spectral clustering" is sometimes used to refer to the clustering of mass spectrometry data. However, it also classically refers to a family of popular clustering algorithms. To avoid confusion, a more specific term could advantageously be coined. ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00516

    authors: Borges H,Guibert R,Permiakova O,Burger T

    更新日期:2019-01-04 00:00:00