Artificial selection for a green revolution gene during japonica rice domestication.

Abstract:

:The semidwarf phenotype has been extensively selected during modern crop breeding as an agronomically important trait. Introduction of the semidwarf gene, semi-dwarf1 (sd1), which encodes a gibberellin biosynthesis enzyme, made significant contributions to the "green revolution" in rice (Oryza sativa L.). Here we report that SD1 was involved not only in modern breeding including the green revolution, but also in early steps of rice domestication. We identified two SNPs in O. sativa subspecies (ssp.) japonica SD1 as functional nucleotide polymorphisms (FNPs) responsible for shorter culm length and low gibberellin biosynthetic activity. Genetic diversity analysis among O. sativa ssp. japonica and indica, along with their wild ancestor O. rufipogon Griff, revealed that these FNPs clearly differentiate the japonica landrace and O. rufipogon. We also found a dramatic reduction in nucleotide diversity around SD1 only in the japonica landrace, not in the indica landrace or O. rufipogon. These findings indicate that SD1 has been subjected to artificial selection in rice evolution and that the FNPs participated in japonica domestication, suggesting that ancient humans already used the green revolution gene.

authors

Asano K,Yamasaki M,Takuno S,Miura K,Katagiri S,Ito T,Doi K,Wu J,Ebana K,Matsumoto T,Innan H,Kitano H,Ashikari M,Matsuoka M

doi

10.1073/pnas.1019490108

subject

Has Abstract

pub_date

2011-07-05 00:00:00

pages

11034-9

issue

27

eissn

0027-8424

issn

1091-6490

pii

1019490108

journal_volume

108

pub_type

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