Quantitative digital in situ senescence-associated β-galactosidase assay.

Abstract:

BACKGROUND:Cellular senescence plays important roles in the aging process of complex organisms, in tumor suppression and in response to stress. Several markers can be used to identify senescent cells, of which the most widely used is the senescence-associated β-galactosidase (SABG) activity. The main advantage of SABG activity over other markers is the simplicity of the detection assay and the capacity to identify in situ a senescent cell in a heterogeneous cell population. Several approaches have been introduced to render the SABG assay quantitative. However none of these approaches to date has proven particularly amenable to quantitative analysis of SABG activity in situ. Furthermore the role of cellular senescence (CS) in vivo remains unclear mainly due to the ambiguity of current cellular markers in identifying CS of individual cells in tissues. RESULTS:In the current study we applied a digital image analysis technique to the staining generated using the original SABG assay, and demonstrate that this analysis is highly reproducible and sensitive to subtle differences in staining intensities resulting from diverse cellular senescence pathways in culture. We have further validated our method on mouse kidney samples with and without diabetes mellitus, and show that a more accurate quantitative SABG activity with a wider range of values can be achieved at a pH lower than that used in the conventional SABG assay. CONCLUSIONS:We conclude that quantitative in situ SABG assay, is feasible and reproducible and that the pH at which the reaction is performed should be tailored and chosen, depending on the research question and experimental system of interest.

journal_name

BMC Cell Biol

journal_title

BMC cell biology

authors

Shlush LI,Itzkovitz S,Cohen A,Rutenberg A,Berkovitz R,Yehezkel S,Shahar H,Selig S,Skorecki K

doi

10.1186/1471-2121-12-16

subject

Has Abstract

pub_date

2011-04-15 00:00:00

pages

16

issn

1471-2121

pii

1471-2121-12-16

journal_volume

12

pub_type

杂志文章
  • Long term culture of mesenchymal stem cells in hypoxia promotes a genetic program maintaining their undifferentiated and multipotent status.

    abstract:BACKGROUND:In the bone marrow, hematopietic and mesenchymal stem cells form a unique niche in which the oxygen tension is low. Hypoxia may have a role in maintaining stem cell fate, self renewal and multipotency. However, whereas most studies addressed the effect of transient in vitro exposure of MSC to hypoxia, perman...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-12-12

    authors: Basciano L,Nemos C,Foliguet B,de Isla N,de Carvalho M,Tran N,Dalloul A

    更新日期:2011-03-30 00:00:00

  • Upregulation of Toll-like receptor (TLR) expression and release of cytokines from P815 mast cells by GM-CSF.

    abstract:BACKGROUND:Recently, mast cells have been recognized to express several Toll-like receptors (TLRs) on their membrane surfaces, and granulocyte-macrophage colony-stimulating factor (GM-CSF) was reported to be able to alter expression of TLRs and cytokine production in neutrophils. However, whether GM-CSF modulates the e...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-10-37

    authors: Yang H,Wei J,Zhang H,Lin L,Zhang W,He S

    更新日期:2009-05-09 00:00:00

  • Proceedings of the 2006 International Workshop on Multiscale Biological Imaging, Data Mining and Informatics, Santa Barbara, USA (BII06).

    abstract::The 2006 International Workshop on Multiscale Biological Imaging, Data Mining and Informatics was held at Santa Barbara, on Sept 7-8, 2006. Based on the presentations at the workshop, we selected and compiled this collection of research articles related to novel algorithms and enabling techniques for bio- and biomedic...

    journal_title:BMC cell biology

    pub_type: 总体

    doi:10.1186/1471-2121-8-S1-S1

    authors:

    更新日期:2007-07-10 00:00:00

  • Impaired wound healing in mice deficient in a matricellular protein SPARC (osteonectin, BM-40).

    abstract:BACKGROUND:SPARC is a matricellular protein involved in cell-matrix interactions. From expression patterns at the wound site and in vitro studies, SPARC has been implicated in the control of wound healing. Here we examined the function of SPARC in cutaneous wound healing using SPARC-null mice and dermal fibroblasts der...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-2-15

    authors: Basu A,Kligman LH,Samulewicz SJ,Howe CC

    更新日期:2001-01-01 00:00:00

  • The effects of acacia honey on in vitro corneal abrasion wound healing model.

    abstract:BACKGROUND:Acacia honey (AH) has been proven to improve skin wound healing, but its therapeutic effects on corneal epithelium has not been elucidated to date. This study aimed to investigate the effects of AH on cultured corneal epithelial cells (CEC) on in vitro corneal abrasion wound healing model. Six New Zealand wh...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/s12860-015-0053-9

    authors: Ker-Woon C,Abd Ghafar N,Hui CK,Mohd Yusof YA,Wan Ngah WZ

    更新日期:2015-02-18 00:00:00

  • Restoration of angiogenic capacity of diabetes-insulted mesenchymal stem cells by oxytocin.

    abstract:BACKGROUND:Angiogenesis is the main therapeutic mechanism of cell therapy for cardiovascular diseases, but diabetes is reported to reduce the function and number of progenitor cells. Therefore, we studied the effect of streptozotocin-induced diabetes on the bone marrow-mesenchymal stem cell (MSC) function, and examined...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-14-38

    authors: Kim YS,Kwon JS,Hong MH,Kang WS,Jeong HY,Kang HJ,Jeong Mh,Ahn Y

    更新日期:2013-09-11 00:00:00

  • Melatonin enhances DNA repair capacity possibly by affecting genes involved in DNA damage responsive pathways.

    abstract:BACKGROUND:Melatonin, a hormone-like substance involved in the regulation of the circadian rhythm, has been demonstrated to protect cells against oxidative DNA damage and to inhibit tumorigenesis. RESULTS:In the current study, we investigated the effect of melatonin on DNA strand breaks using the alkaline DNA comet as...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-14-1

    authors: Liu R,Fu A,Hoffman AE,Zheng T,Zhu Y

    更新日期:2013-01-07 00:00:00

  • Centriole movements in mammalian epithelial cells during cytokinesis.

    abstract:BACKGROUND:In cytokinesis, when the cleavage furrow has been formed, the two centrioles in each daughter cell separate. It has been suggested that the centrioles facilitate and regulate cytokinesis to some extent. It has been postulated that termination of cytokinesis (abscission) depends on the migration of a centriol...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-11-34

    authors: Jonsdottir AB,Dirks RW,Vrolijk J,Ogmundsdottir HM,Tanke HJ,Eyfjörd JE,Szuhai K

    更新日期:2010-05-21 00:00:00

  • Identifying genes preferentially expressed in undifferentiated embryonic stem cells.

    abstract:BACKGROUND:The mechanism involved in the maintenance and differentiation of embryonic stem (ES) cells is incompletely understood. RESULTS:To address this issue, we have developed a retroviral gene trap vector that can target genes expressed in undifferentiated ES cells. This gene trap vector harbors both GFP and Neo r...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-8-37

    authors: Li X,Leder P

    更新日期:2007-08-28 00:00:00

  • Nuclear variants of bone morphogenetic proteins.

    abstract:BACKGROUND:Bone morphogenetic proteins (BMPs) contribute to many different aspects of development including mesoderm formation, heart development, neurogenesis, skeletal development, and axis formation. They have previously been recognized only as secreted growth factors, but the present study detected Bmp2, Bmp4, and ...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-11-20

    authors: Felin JE,Mayo JL,Loos TJ,Jensen JD,Sperry DK,Gaufin SL,Meinhart CA,Moss JB,Bridgewater LC

    更新日期:2010-03-15 00:00:00

  • Intracellular trafficking and endocytosis of CXCR4 in fetal mesenchymal stem/stromal cells.

    abstract:BACKGROUND:Fetal mesenchymal stem/stromal cells (MSC) represent a developmentally-advantageous cell type with translational potential.To enhance adult MSC migration, studies have focussed on the role of the chemokine receptor CXCR4 and its ligand SDF-1 (CXCL12), but more recent work implicates an intricate system of CX...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-15-15

    authors: Pelekanos RA,Ting MJ,Sardesai VS,Ryan JM,Lim YC,Chan JK,Fisk NM

    更新日期:2014-05-16 00:00:00

  • A novel peptide (GX1) homing to gastric cancer vasculature inhibits angiogenesis and cooperates with TNF alpha in anti-tumor therapy.

    abstract:BACKGROUND:The discovery of the importance of angiogenesis in tumor growth has emphasized the need to find specific vascular targets for tumor-targeted therapies. Previously, using phage display technology, we identified the peptide GX1 as having the ability to target the gastric cancer vasculature. The present study i...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-10-63

    authors: Chen B,Cao S,Zhang Y,Wang X,Liu J,Hui X,Wan Y,Du W,Wang L,Wu K,Fan D

    更新日期:2009-09-09 00:00:00

  • TMF is a golgin that binds Rab6 and influences Golgi morphology.

    abstract:BACKGROUND:Golgins are coiled-coil proteins associated with the Golgi apparatus, that are believed to be involved in the tethering of vesicles and the stacking of cisternae, as well as other functions such as cytoskeletal association. Many are peripheral membrane proteins recruited by GTPases. Several have been describ...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-5-18

    authors: Fridmann-Sirkis Y,Siniossoglou S,Pelham HR

    更新日期:2004-05-05 00:00:00

  • Actin binding domains direct actin-binding proteins to different cytoskeletal locations.

    abstract:BACKGROUND:Filamin (FLN) and non-muscle alpha-actinin are members of a family of F-actin cross-linking proteins that utilize Calponin Homology domains (CH-domain) for actin binding. Although these two proteins have been extensively characterized, little is known about what regulates their binding to F-actin filaments i...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-9-10

    authors: Washington RW,Knecht DA

    更新日期:2008-02-13 00:00:00

  • The chromosomal association/dissociation of the chromatin insulator protein Cp190 of Drosophila melanogaster is mediated by the BTB/POZ domain and two acidic regions.

    abstract:BACKGROUND:Chromatin insulators or boundary elements are a class of functional elements in the eukaryotic genome. They regulate gene transcription by interfering with promoter-enhancer communication. The Cp190 protein of Drosophila melanogaster is essential to the function of at least three-types of chromatin insulator...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-11-101

    authors: Oliver D,Sheehan B,South H,Akbari O,Pai CY

    更新日期:2010-12-31 00:00:00

  • Lipid droplets as ubiquitous fat storage organelles in C. elegans.

    abstract:BACKGROUND:Lipid droplets are a class of eukaryotic cell organelles for storage of neutral fat such as triacylglycerol (TAG) and cholesterol ester (CE). We and others have recently reported that lysosome-related organelles (LROs) are not fat storage structures in the nematode C. elegans. We also reported the formation ...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-11-96

    authors: Zhang SO,Trimble R,Guo F,Mak HY

    更新日期:2010-12-08 00:00:00

  • Tanshinone IIA reduces SW837 colorectal cancer cell viability via the promotion of mitochondrial fission by activating JNK-Mff signaling pathways.

    abstract:BACKGROUND:Mitochondrial homeostasis has been increasingly viewed as a potential target of cancer therapy, and mitochondrial fission is a novel regulator of mitochondrial function and apoptosis. The aim of our study was to determine the detailed role of mitochondrial fission in SW837 colorectal cancer cell viability, m...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/s12860-018-0174-z

    authors: Jieensinue S,Zhu H,Li G,Dong K,Liang M,Li Y

    更新日期:2018-09-25 00:00:00

  • The interaction of Kinesin-1 with its adaptor protein JIP1 can be regulated via proteins binding to the JIP1-PTB domain.

    abstract:BACKGROUND:The regulatory mechanisms of motor protein-dependent intracellular transport are still not fully understood. The kinesin-1-binding protein, JIP1, can function as an adaptor protein that links kinesin-1 and other JIP1-binding "cargo" proteins. However, it is unknown whether these "cargo" proteins influence th...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-14-12

    authors: Satake T,Otsuki K,Banba Y,Suenaga J,Hirano H,Yamanaka Y,Ohno S,Hirai S

    更新日期:2013-03-04 00:00:00

  • 3D nuclear organization of telomeres in the Hodgkin cell lines U-HO1 and U-HO1-PTPN1: PTPN1 expression prevents the formation of very short telomeres including "t-stumps".

    abstract:BACKGROUND:In cancer cells the three-dimensional (3D) telomere organization of interphase nuclei into a telomeric disk is heavily distorted and aggregates are found. In Hodgkin's lymphoma quantitative FISH (3D Q-FISH) reveals a major impact of nuclear telomere dynamics during the transition form mononuclear Hodgkin (H)...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-11-99

    authors: Knecht H,Brüderlein S,Wegener S,Lichtensztejn D,Lichtensztejn Z,Lemieux B,Möller P,Mai S

    更新日期:2010-12-14 00:00:00

  • Isolation of bacteria-containing phagosomes by magnetic selection.

    abstract:BACKGROUND:There is a growing awareness of the importance of intracellular events in determining the outcome of infectious disease. To improve the understanding of such events, like phagosome maturation, we set out to develop a versatile technique for phagosome isolation that is rapid and widely applicable to different...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-9-35

    authors: Lönnbro P,Nordenfelt P,Tapper H

    更新日期:2008-06-27 00:00:00

  • A new standard nomenclature for proteins related to Apx and Shroom.

    abstract::Shroom is a recently-described regulator of cell shape changes in the developing nervous system. This protein is a member of a small family of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. At present these proteins are named Shroom, APX, APXL, and KI...

    journal_title:BMC cell biology

    pub_type: 社论

    doi:10.1186/1471-2121-7-18

    authors: Hagens O,Ballabio A,Kalscheuer V,Kraehenbuhl JP,Schiaffino MV,Smith P,Staub O,Hildebrand J,Wallingford JB

    更新日期:2006-04-14 00:00:00

  • Establishment and characterization of immortalized Gli-null mouse embryonic fibroblast cell lines.

    abstract:BACKGROUND:Hedgehog (Hh) signaling is a conserved morphogenetic pathway which plays critical roles in embryonic development, with emerging evidence also supporting a role in healing and repair processes and tumorigenesis. The Gli family of transcription factors (Gli1, 2 and 3) mediate the Hedgehog morphogenetic signal ...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-9-49

    authors: Lipinski RJ,Bijlsma MF,Gipp JJ,Podhaizer DJ,Bushman W

    更新日期:2008-09-13 00:00:00

  • Mucin 1 (MUC1) is a novel partner for MAL2 in breast carcinoma cells.

    abstract:BACKGROUND:The MAL2 gene, encoding a four-transmembrane protein of the MAL family, is amplified and overexpressed in breast and other cancers, yet the significance of this is unknown. MAL-like proteins have trafficking functions, but their molecular roles are largely obscure, partly due to a lack of known binding partn...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-10-7

    authors: Fanayan S,Shehata M,Agterof AP,McGuckin MA,Alonso MA,Byrne JA

    更新日期:2009-01-28 00:00:00

  • Bone morphogenetic protein-2 (BMP-2) and transforming growth factor-beta1 (TGF-beta1) alter connexin 43 phosphorylation in MC3T3-E1 Cells.

    abstract:BACKGROUND:Bone morphogenetic proteins (BMPs) and transforming growth factor-betas (TGF-betas) are important regulators of bone repair and regeneration. BMP-2 and TGF-beta1 have been shown to inhibit gap junctional intercellular communication (GJIC) in MC3T3-E1 cells. Connexin 43 (Cx43) has been shown to mediate GJIC i...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-2-14

    authors: Wyatt LE,Chung CY,Carlsen B,Iida-Klein A,Rudkin GH,Ishida K,Yamaguchi DT,Miller TA

    更新日期:2001-01-01 00:00:00

  • Serine/threonine protein phosphatase 5 (PP5) participates in the regulation of glucocorticoid receptor nucleocytoplasmic shuttling.

    abstract:BACKGROUND:In most cells glucocorticoid receptors (GR) reside predominantly in the cytoplasm. Upon hormone binding, the GR translocates into the nucleus, where the hormone-activated GR-complex regulates the transcription of GR-responsive genes. Serine/threonine protein phosphatase type 5 (PP5) associates with the GR-he...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-2-6

    authors: Dean DA,Urban G,Aragon IV,Swingle M,Miller B,Rusconi S,Bueno M,Dean NM,Honkanen RE

    更新日期:2001-01-01 00:00:00

  • Ex vivo analysis of renal proximal tubular cells.

    abstract:BACKGROUND:Experimental models are inevitably a compromise between accurately reproducing a pathological situation and schematically simplifying it, which is intended to provide both relevance and conclusiveness. In-vivo models are very relevant, but multiple cell-types undergoing various changes may hinder the observa...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/s12860-015-0058-4

    authors: Legouis D,Bataille A,Hertig A,Vandermeersch S,Simon N,Rondeau E,Galichon P

    更新日期:2015-03-25 00:00:00

  • Ligands specify estrogen receptor alpha nuclear localization and degradation.

    abstract:BACKGROUND:The estrogen receptor alpha (ERα) is found predominately in the nucleus, both in hormone stimulated and untreated cells. Intracellular distribution of the ERα changes in the presence of agonists but the impact of different antiestrogens on the fate of ERα is a matter of debate. RESULTS:A MCF-7 cell line sta...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-11-98

    authors: Kocanova S,Mazaheri M,Caze-Subra S,Bystricky K

    更新日期:2010-12-10 00:00:00

  • Phosphatase inhibitor 2 promotes acetylation of tubulin in the primary cilium of human retinal epithelial cells.

    abstract:BACKGROUND:Primary cilia are flagella-like projections from the centriole of mammalian cells that have a key role in cell signaling. Human diseases are linked to defects in primary cilia. Microtubules make up the axoneme of cilia and are selectively acetylated and this is thought to contribute to the stability of the s...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-9-62

    authors: Wang W,Brautigan DL

    更新日期:2008-11-26 00:00:00

  • Differential localization in cells of myosin II heavy chain kinases during cytokinesis and polarized migration.

    abstract:BACKGROUND:Cortical myosin-II filaments in Dictyostelium discoideum display enrichment in the posterior of the cell during cell migration, and in the cleavage furrow during cytokinesis. Filament assembly in turn is regulated by phosphorylation in the tail region of the myosin heavy chain (MHC). Early studies have revea...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-3-19

    authors: Liang W,Licate L,Warrick H,Spudich J,Egelhoff T

    更新日期:2002-07-24 00:00:00

  • A human polymorphism affects NEDD4L subcellular targeting by leading to two isoforms that contain or lack a C2 domain.

    abstract:BACKGROUND:Ubiquitination serves multiple cellular functions, including proteasomal degradation and the control of stability, function, and intracellular localization of a wide variety of proteins. NEDD4L is a member of the HECT class of E3 ubiquitin ligases. A defining feature of NEDD4L protein isoforms is the presenc...

    journal_title:BMC cell biology

    pub_type: 杂志文章

    doi:10.1186/1471-2121-10-26

    authors: Garrone NF,Blazer-Yost BL,Weiss RB,Lalouel JM,Rohrwasser A

    更新日期:2009-04-13 00:00:00