An evaluation of 3C-based methods to capture DNA interactions.

Abstract:

:The shape of the genome is thought to play an important part in the coordination of transcription and other DNA-metabolic processes. Chromosome conformation capture (3C) technology allows us to analyze the folding of chromatin in the native cellular state at a resolution beyond that provided by current microscopy techniques. It has been used, for example, to demonstrate that regulatory DNA elements communicate with distant target genes through direct physical interactions that loop out the intervening chromatin fiber. Here we discuss the intricacies of 3C and new 3C-based methods including the 4C, 5C and ChIP-loop assay.

journal_name

Nat Methods

journal_title

Nature methods

authors

Simonis M,Kooren J,de Laat W

doi

10.1038/nmeth1114

subject

Has Abstract

pub_date

2007-11-01 00:00:00

pages

895-901

issue

11

eissn

1548-7091

issn

1548-7105

pii

nmeth1114

journal_volume

4

pub_type

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