Rapid alteration of the phosphoproteome in the moss Physcomitrella patens after cytokinin treatment.

Abstract:

:Cytokinin hormones are crucial regulators of a large number of processes in plant development. Recently, significant progress has been made toward the elucidation of the molecular details of cytokinin that has led to a model for signal transduction involving a phosphorylation cascade. However, the current knowledge of cytokinin action remains largely unknown and does not explain the different roles of this hormone. To gain further insights into this aspect of cytokinin action and the inducible phosphorelay, we have produced the first large-scale map of a phosphoproteome in the moss Physcomitrella patens. Using a protocol that we recently published (Heintz, D.; et al. Electrophoresis 2004, 25, 1149-1159) that combines IMAC, MALDI-TOF-MS, and LC-MS/MS, a total of 172 phosphopeptide sequences were obtained by a peptide de novo sequencing strategy. Specific P. patens EST and raw genomic databases were interrogated, and protein homology searches resulted in the identification of 112 proteins that were then classified into functional categories. In addition, the temporal dynamics of the phosphoproteome in response to cytokinin stimulation was studied at 2, 4, 6, and 15 min after hormone addition. We identified 13 proteins that were not previously known targets of cytokinin action. Among the responsive proteins, some were involved in metabolism, and several proteins of unknown function were also identified. We have mapped the time course of their activation in response to cytokinin and discussed their hypothetical biological significance. Deciphering these early induced phosphorylation events has shown that the cytokinin effect can be rapid (few minutes), and the duration of this effect can be variable. Also phosphorylation events can be differentially regulated. Taken together our proteomic study provides an enriched look of the multistep phosphorelay system mediating cytokinin response and suggests the existence of a multidirectional interaction between cytokinin and numerous other pathways.

journal_name

J Proteome Res

authors

Heintz D,Erxleben A,High AA,Wurtz V,Reski R,Van Dorsselaer A,Sarnighausen E

doi

10.1021/pr060152e

subject

Has Abstract

pub_date

2006-09-01 00:00:00

pages

2283-93

issue

9

eissn

1535-3893

issn

1535-3907

journal_volume

5

pub_type

杂志文章
  • Discovery of Manassantin A Protein Targets Using Large-Scale Protein Folding and Stability Measurements.

    abstract::Manassantin A is a natural product that has been shown to have anticancer activity in cell-based assays, but has a largely unknown mode-of-action. Described here is the use of two different energetics-based approaches to identify protein targets of manassantin A. Using the stability of proteins from rates of oxidation...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00237

    authors: Geer Wallace MA,Kwon DY,Weitzel DH,Lee CT,Stephenson TN,Chi JT,Mook RA Jr,Dewhirst MW,Hong J,Fitzgerald MC

    更新日期:2016-08-05 00:00:00

  • Metabolomic Profiling of the Aqueous Humor in Patients with Wet Age-Related Macular Degeneration Using UHPLC-MS/MS.

    abstract::Assessing metabolomic alterations in age-related macular degeneration (AMD) can provide insights into its pathogenesis. We compared the metabolomic profiles of the aqueous humor between wet AMD patients (n = 26) and age- and sex-matched patients undergoing cataract surgery without AMD as controls (n = 20). A global un...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00036

    authors: Han G,Wei P,He M,Teng H,Chu Y

    更新日期:2020-06-05 00:00:00

  • Comparative proteomic analysis reveals sex and estrogen receptor β effects in the pressure overloaded heart.

    abstract::In pressure overload (PO), sex differences in humans and rodents have been well documented and estrogen receptor (ER) β is considered cardioprotective. However, the underlying mechanisms are poorly understood. Our aim was to investigate sex- and ERβ-specific effects in protein abundance in PO employing a 2-dimensional...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500749j

    authors: Kararigas G,Fliegner D,Forler S,Klein O,Schubert C,Gustafsson JÅ,Klose J,Regitz-Zagrosek V

    更新日期:2014-12-05 00:00:00

  • Western honeybee drones and workers (Apis mellifera ligustica) have different olfactory mechanisms than eastern honeybees (Apis cerana cerana).

    abstract::The honeybees Apis mellifera ligustica (Aml) and Apis cerana cerana (Acc) are two different western and eastern bee species that evolved in distinct ecologies and developed specific antennal olfactory systems for their survival. Knowledge of how their antennal olfactory systems function in regards to the success of ea...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300298w

    authors: Woltedji D,Song F,Zhang L,Gala A,Han B,Feng M,Fang Y,Li J

    更新日期:2012-09-07 00:00:00

  • Integrity of Glycosylation Processing of a Glycan-Depleted Trimeric HIV-1 Immunogen Targeting Key B-Cell Lineages.

    abstract::Broadly neutralizing antibodies (bNAbs) that target the trimeric HIV-1 envelope glycoprotein spike (Env) are tools that can guide the design of recombinant Env proteins intended to engage the predicted human germline precursors of bNAbs (gl-bNAbs). The protein components of gl-bNAb epitopes are often masked by glycans...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00639

    authors: Behrens AJ,Kumar A,Medina-Ramirez M,Cupo A,Marshall K,Cruz Portillo VM,Harvey DJ,Ozorowski G,Zitzmann N,Wilson IA,Ward AB,Struwe WB,Moore JP,Sanders RW,Crispin M

    更新日期:2018-03-02 00:00:00

  • Absolute protein quantification by LC/MS(E) for global analysis of salicylic acid-induced plant protein secretion responses.

    abstract::The plant cell wall is a dynamic cellular compartment consisting of a complex matrix of components that can change dramatically in response to environmental stresses. During pathogen attack, for instance, a wide spectrum of proteins that participate in various sequential processes involved in plant defense is secreted...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800649s

    authors: Cheng FY,Blackburn K,Lin YM,Goshe MB,Williamson JD

    更新日期:2009-01-01 00:00:00

  • Effects of Histidine Supplementation on Global Serum and Urine 1H NMR-based Metabolomics and Serum Amino Acid Profiles in Obese Women from a Randomized Controlled Study.

    abstract::The aim of current study was to investigate the metabolic changes associated with histidine supplementation in serum and urine metabolic signatures and serum amino acid (AA) profiles. Serum and urine 1H NMR-based metabolomics and serum AA profiles were employed in 32 and 37 obese women with metabolic syndrome (MetS) i...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,随机对照试验

    doi:10.1021/acs.jproteome.7b00030

    authors: Du S,Sun S,Liu L,Zhang Q,Guo F,Li C,Feng R,Sun C

    更新日期:2017-06-02 00:00:00

  • Combination of LC-MS- and GC-MS-based metabolomics to study the effect of ozonated autohemotherapy on human blood.

    abstract::Ozonated autohemotherapy (O3-AHT) is a medical approach during which blood obtained from the patient is ozonated and injected back into the body. Despite an increasing number of evidence that O3-AHT is safe, this type of therapy remains controversial. To extend knowledge about the changes in blood evoked by O3-AHT, LC...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3008946

    authors: Ciborowski M,Lipska A,Godzien J,Ferrarini A,Korsak J,Radziwon P,Tomasiak M,Barbas C

    更新日期:2012-12-07 00:00:00

  • Metabolomic Profiling of Aqueous Humor in Glaucoma Points to Taurine and Spermine Deficiency: Findings from the Eye-D Study.

    abstract::We compared the metabolomic profile of aqueous humor from patients with primary open-angle glaucoma (POAG; n = 26) with that of a group of age- and sex-matched non-POAG controls (n = 26), all participants undergoing cataract surgery. Supervised paired partial least-squares discriminant analysis showed good predictive ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00915

    authors: Buisset A,Gohier P,Leruez S,Muller J,Amati-Bonneau P,Lenaers G,Bonneau D,Simard G,Procaccio V,Annweiler C,Milea D,Reynier P,Chao de la Barca JM

    更新日期:2019-03-01 00:00:00

  • NMRmix: A Tool for the Optimization of Compound Mixtures in 1D (1)H NMR Ligand Affinity Screens.

    abstract::NMR ligand affinity screening is a powerful technique that is routinely used in drug discovery or functional genomics to directly detect protein-ligand binding events. Binding events can be identified by monitoring differences in the 1D (1)H NMR spectrum of a compound with and without protein. Although a single NMR sp...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00121

    authors: Stark JL,Eghbalnia HR,Lee W,Westler WM,Markley JL

    更新日期:2016-04-01 00:00:00

  • Poly(glycidyl methacrylate/divinylbenzene)-IDA-FeIII in phosphoproteomics.

    abstract::The study of protein phosphorylation has grown exponentially in recent years, as it became evident that important cellular functions are regulated by phosphorylation and dephosphorylation of proteins on serine, threonine and tyrosine residues. The use of immobilized metal affinity chromatography (IMAC) to enrich phosp...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050224m

    authors: Aprilita NH,Huck CW,Bakry R,Feuerstein I,Stecher G,Morandell S,Huang HL,Stasyk T,Huber LA,Bonn GK

    更新日期:2005-11-01 00:00:00

  • Distinct Metabolic Features of Seminoma and Embryonal Carcinoma Revealed by Combined Transcriptome and Metabolome Analyses.

    abstract::Seminoma and embryonal carcinoma (EC), two typical types of testicular germ cell tumors (TGCTs), present significant differences in growth behavior, expression characteristics, differentiation potential, clinical features, therapy, and prognosis. The purpose of this study was to compare the distinctive or preference m...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00007

    authors: Batool A,Chen SR,Liu YX

    更新日期:2019-04-05 00:00:00

  • Comparative proteomics analysis of selenium responses in selenium-enriched rice grains.

    abstract::By foliar fortification with selenite, selenium (Se)-enriched rice with a higher Se content and grain yield has been generated. However, the regulatory mechanisms of Se response in rice grains remain unknown; therefore, we carried out a comparative proteomics study in Se-enriched rice grains by using two approaches in...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300878y

    authors: Wang YD,Wang X,Ngai SM,Wong YS

    更新日期:2013-02-01 00:00:00

  • Variability in Streptavidin-Sepharose Matrix Quality Can Significantly Affect Proximity-Dependent Biotinylation (BioID) Data.

    abstract::Due to their ease of use and high binding affinity, streptavidin-based purification tools have become widely used for isolating biotinylated compounds from complex mixtures. We and others routinely use streptavidin-sepharose matrices to isolate biotinylated polypeptides generated in proximity-dependent biotinylation a...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00117

    authors: St-Germain JR,Samavarchi Tehrani P,Wong C,Larsen B,Gingras AC,Raught B

    更新日期:2020-08-07 00:00:00

  • Selective isolation of lysine-free tryptic peptides delimited by arginine residues: A new tool for proteome analysis.

    abstract::Tryptic digestion of biotinylated Lys-C peptides followed by affinity chromatography allows the selective isolation of lysine-free tryptic peptides delimited by arginine residues (RRnK peptides). In silico analysis revealed that RRnK peptides represent 87% of the whole proteomes and their specific isolation simplifies...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060003w

    authors: Sánchez A,González LJ,Ramos Y,Betancourt L,Gil J,Besada V,Fernández-de-Cossio J,Alvarez F,Padrón G

    更新日期:2006-05-01 00:00:00

  • Metabolomic analysis of akt1-mediated muscle hypertrophy in models of diet-induced obesity and age-related fat accumulation.

    abstract::Akt1 is a serine/threonine kinase that promotes cell growth and survival. Previously, Akt1 activation in a double transgenic (DTG) mouse model fed a high-fat/high-sucrose (HF/HS) diet was found to promote type IIb muscle growth and to lead to a significant reduction in obesity. Here, we have used metabolomics to exami...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500756u

    authors: Cheng KK,Akasaki Y,Lecommandeur E,Lindsay RT,Murfitt S,Walsh K,Griffin JL

    更新日期:2015-01-02 00:00:00

  • Nitric oxide and oxygen radical attack on GDP-dissociation inhibitor 2 (GDI-2) in spinal cord injury of the rat.

    abstract::Protein oxidation and nitration have been described during spinal cord injury (SCI) in animal models. Herein, mass spectrometry unambiguously identified GDP-dissociation inhibitor-2 (GDI-2) in SCI with post-translational modifications of 3-aminotyrosine (8 h post-injury) and an acrolein adduct of GDI-2 (72 h post-inju...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060620k

    authors: John JP,Pintsov O,Petter-Puchner A,Redl H,Pollak A,Chen WQ,Lubec G

    更新日期:2007-04-01 00:00:00

  • Prediction of Protein Lysine Acylation by Integrating Primary Sequence Information with Multiple Functional Features.

    abstract::Liquid chromatography-tandem mass spectrometry (LC-MS/MS)-based proteomic methods have been widely used to identify lysine acylation proteins. However, these experimental approaches often fail to detect proteins that are in low abundance or absent in specific biological samples. To circumvent these problems, we develo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00240

    authors: Du Y,Zhai Z,Li Y,Lu M,Cai T,Zhou B,Huang L,Wei T,Li T

    更新日期:2016-12-02 00:00:00

  • Interactome of the amyloid precursor protein APP in brain reveals a protein network involved in synaptic vesicle turnover and a close association with Synaptotagmin-1.

    abstract::Knowledge of the protein networks interacting with the amyloid precursor protein (APP) in vivo can shed light on the physiological function of APP. To date, most proteins interacting with the APP intracellular domain (AICD) have been identified by Yeast Two Hybrid screens which only detect direct interaction partners....

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300123g

    authors: Kohli BM,Pflieger D,Mueller LN,Carbonetti G,Aebersold R,Nitsch RM,Konietzko U

    更新日期:2012-08-03 00:00:00

  • Changes in the striatal proteome of YAC128Q mice exhibit gene-environment interactions between mutant huntingtin and manganese.

    abstract::Huntington's disease (HD) is a neurodegenerative disorder caused by expansion of a CAG repeat within the Huntingtin (HTT) gene, though the clinical presentation of disease and age-of-onset are strongly influenced by ill-defined environmental factors. We recently reported a gene-environment interaction wherein expressi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200839d

    authors: Wegrzynowicz M,Holt HK,Friedman DB,Bowman AB

    更新日期:2012-02-03 00:00:00

  • The proapoptotic C16-ceramide-dependent pathway requires the death-promoting factor Btf in colon adenocarcinoma cells.

    abstract::Ceramides are central molecules in sphingolipid metabolism. They are involved in the regulation of cancer-cell growth, differentiation, senescence and apoptosis. To better understand how these secondary messengers induce their biological effects, adenocarcinoma cells (HCT116) were treated with exogenous long-chain cer...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr9005316

    authors: Rénert AF,Leprince P,Dieu M,Renaut J,Raes M,Bours V,Chapelle JP,Piette J,Merville MP,Fillet M

    更新日期:2009-10-01 00:00:00

  • Snake venomics of Bothriechis nigroviridis reveals extreme variability among palm pitviper venoms: different evolutionary solutions for the same trophic purpose.

    abstract::We report the proteomic characterization and biological activities of the venom of the black-speckled palm pitviper, Bothriechis nigroviridis, a neotropical arboreal pitviper from Costa Rica. In marked contrast to other Bothriechis species investigated, the venom of B. nigroviridis does not possess detectable Zn(2+)-d...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100545d

    authors: Fernández J,Lomonte B,Sanz L,Angulo Y,Gutiérrez JM,Calvete JJ

    更新日期:2010-08-06 00:00:00

  • abFASP-MS: affinity-based filter-aided sample preparation mass spectrometry for quantitative analysis of chemically labeled protein complexes.

    abstract::Affinity purification coupled to 1-D gel-free liquid chromatography mass spectrometry (LC-MS) is a well-established and widespread approach for the analyses of noncovalently interacting protein complexes. In this study, two proteins conjugated to a streptavidin-binding peptide and hemagglutinin double tag were express...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4009892

    authors: Huber ML,Sacco R,Parapatics K,Skucha A,Khamina K,Müller AC,Rudashevskaya EL,Bennett KL

    更新日期:2014-02-07 00:00:00

  • Differentiating proteomic biomarkers in breast cancer by laser capture microdissection and MALDI MS.

    abstract::We assessed proteomic patterns in breast cancer using MALDI MS and laser capture microdissected cells. Protein and peptide expression in invasive mammary carcinoma versus normal mammary epithelium and estrogen-receptor positive versus estrogen-receptor negative tumors were compared. Biomarker candidates were identifie...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7008109

    authors: Sanders ME,Dias EC,Xu BJ,Mobley JA,Billheimer D,Roder H,Grigorieva J,Dowsett M,Arteaga CL,Caprioli RM

    更新日期:2008-04-01 00:00:00

  • Occurrence and detection of phosphopeptide isomers in large-scale phosphoproteomics experiments.

    abstract::The past decade has been marked by the emergence of selective affinity media and sensitive mass spectrometry instrumentation that facilitated large-scale phosphoproteome analyses and expanded the repertoire of protein phosphorylation. Despite these remarkable advances, the precise location of the phosphorylation site ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300229m

    authors: Courcelles M,Bridon G,Lemieux S,Thibault P

    更新日期:2012-07-06 00:00:00

  • Comparison of protein immunoprecipitation-multiple reaction monitoring with ELISA for assay of biomarker candidates in plasma.

    abstract::Quantitative analysis of protein biomarkers in plasma is typically done by ELISA, but this method is limited by the availability of high-quality antibodies. An alternative approach is protein immunoprecipitation combined with multiple reaction monitoring mass spectrometry (IP-MRM). We compared IP-MRM to ELISA for the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400877e

    authors: Lin D,Alborn WE,Slebos RJ,Liebler DC

    更新日期:2013-12-06 00:00:00

  • Different residues in channel turret determining the selectivity of ADWX-1 inhibitor peptide between Kv1.1 and Kv1.3 channels.

    abstract::The low selectivity of Kv1 peptide inhibitors for specific isoforms makes them poor candidates for the development of theraputics. Using combined approaches, we showed that the Kv1 turret is the critical determinant for ADWX-1 peptide inhibitor selectivity of Kv1.3 over Kv1.1. Mutation of Kv1.1 turret residues to matc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800494a

    authors: Yin SJ,Jiang L,Yi H,Han S,Yang DW,Liu ML,Liu H,Cao ZJ,Wu YL,Li WX

    更新日期:2008-11-01 00:00:00

  • Identification of trans-golgi network proteins in Arabidopsis thaliana root tissue.

    abstract::Knowledge of protein subcellular localization assists in the elucidation of protein function and understanding of different biological mechanisms that occur at discrete subcellular niches. Organelle-centric proteomics enables localization of thousands of proteins simultaneously. Although such techniques have successfu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr4008464

    authors: Groen AJ,Sancho-Andrés G,Breckels LM,Gatto L,Aniento F,Lilley KS

    更新日期:2014-02-07 00:00:00

  • Mapping Citrullinated Sites in Multiple Organs of Mice Using Hypercitrullinated Library.

    abstract::Protein citrullination (or deimination), an irreversible post-translational modification, has been implicated in several physiological and pathological processes, including gene expression regulation, apoptosis, rheumatoid arthritis, and Alzheimer's disease. Several research studies have been carried out on citrullina...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00118

    authors: Fert-Bober J,Venkatraman V,Hunter CL,Liu R,Crowgey EL,Pandey R,Holewinski RJ,Stotland A,Berman BP,Van Eyk JE

    更新日期:2019-05-03 00:00:00

  • Venom Peptide Repertoire of the European Myrmicine Ant Manica rubida: Identification of Insecticidal Toxins.

    abstract::Using an integrated transcriptomic and proteomic approach, we characterized the venom peptidome of the European red ant, Manica rubida. We identified 13 "myrmicitoxins" that share sequence similarities with previously identified ant venom peptides, one of them being identified as an EGF-like toxin likely resulting fro...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00048

    authors: Touchard A,Aili SR,Téné N,Barassé V,Klopp C,Dejean A,Kini RM,Mrinalini,Coquet L,Jouenne T,Lefranc B,Leprince J,Escoubas P,Nicholson GM,Treilhou M,Bonnafé E

    更新日期:2020-04-03 00:00:00