The nongenotoxic carcinogens naphthalene and para-dichlorobenzene suppress apoptosis in Caenorhabditis elegans.

Abstract:

:Naphthalene (1) and para-dichlorobenzene (PDCB, 2), which are widely used as moth repellents and air fresheners, cause cancer in rodents and are potential human carcinogens. However, their mechanisms of action remain unclear. Here we describe a novel method for delivering and screening hydrophobic chemicals in C. elegans and apply this technique to investigate the ways in which naphthalene and PDCB may promote tumorigenesis in mammals. We show that naphthalene and PDCB inhibit apoptosis in C. elegans, a result that suggests a cellular mechanism by which these chemicals may promote the survival and proliferation of latent tumor cells. In addition, we find that a naphthalene metabolite directly inactivates caspases by oxidizing the active site cysteine residue; this suggests a molecular mechanism by which these chemicals suppress apoptosis. Naphthalene and PDCB are the first small-molecule apoptosis inhibitors identified in C. elegans. The power of C. elegans molecular genetics, in combination with the possibility of carrying out large-scale chemical screens in this organism, makes C. elegans an attractive and economic animal model for both toxicological studies and drug screens.

journal_name

Nat Chem Biol

journal_title

Nature chemical biology

authors

Kokel D,Li Y,Qin J,Xue D

doi

10.1038/nchembio791

subject

Has Abstract

pub_date

2006-06-01 00:00:00

pages

338-45

issue

6

eissn

1552-4450

issn

1552-4469

pii

nchembio791

journal_volume

2

pub_type

杂志文章
  • Synthetic oligonucleotides recruit ILF2/3 to RNA transcripts to modulate splicing.

    abstract::We describe a new technology for recruiting specific proteins to RNA through selective recognition of heteroduplexes formed with chemically modified antisense oligonucleotides (ASOs). Typically, ASOs function by hybridizing to their RNA targets and blocking the binding of single-stranded RNA-binding proteins. Unexpect...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.939

    authors: Rigo F,Hua Y,Chun SJ,Prakash TP,Krainer AR,Bennett CF

    更新日期:2012-04-15 00:00:00

  • Accessing chemical diversity from the uncultivated symbionts of small marine animals.

    abstract::Chemistry drives many biological interactions between the microbiota and host animals, yet it is often challenging to identify the chemicals involved. This poses a problem, as such small molecules are excellent sources of potential pharmaceuticals, pretested by nature for animal compatibility. We discovered anti-HIV c...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.2537

    authors: Smith TE,Pond CD,Pierce E,Harmer ZP,Kwan J,Zachariah MM,Harper MK,Wyche TP,Matainaho TK,Bugni TS,Barrows LR,Ireland CM,Schmidt EW

    更新日期:2018-02-01 00:00:00

  • Evidence for dynamics in proteins as a mechanism for ligand dissociation.

    abstract::Signal transduction, regulatory processes and pharmaceutical responses are highly dependent upon ligand residence times. Gaining insight into how physical factors influence residence times (1/k(off)) should enhance our ability to manipulate biological interactions. We report experiments that yield structural insight i...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.769

    authors: Carroll MJ,Mauldin RV,Gromova AV,Singleton SF,Collins EJ,Lee AL

    更新日期:2012-01-15 00:00:00

  • Gut microbiota-generated metabolites in animal health and disease.

    abstract::Gut microbiota is found in virtually any metazoan, from invertebrates to vertebrates. It has long been believed that gut microbiota, more specifically, the activity of the microbiome and its metabolic products, directly influence a variety of aspects in metazoan physiology. However, the exact molecular relationship am...

    journal_title:Nature chemical biology

    pub_type: 杂志文章,评审

    doi:10.1038/nchembio.1535

    authors: Lee WJ,Hase K

    更新日期:2014-06-01 00:00:00

  • 5-Formylcytosine can be a stable DNA modification in mammals.

    abstract::5-Formylcytosine (5fC) is a rare base found in mammalian DNA and thought to be involved in active DNA demethylation. Here, we show that developmental dynamics of 5fC levels in mouse DNA differ from those of 5-hydroxymethylcytosine (5hmC), and using stable isotope labeling in vivo, we show that 5fC can be a stable DNA ...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.1848

    authors: Bachman M,Uribe-Lewis S,Yang X,Burgess HE,Iurlaro M,Reik W,Murrell A,Balasubramanian S

    更新日期:2015-08-01 00:00:00

  • Monitoring thioredoxin redox with a genetically encoded red fluorescent biosensor.

    abstract::Thioredoxin (Trx) is one of the two major thiol antioxidants, playing essential roles in redox homeostasis and signaling. Despite its importance, there is a lack of methods for monitoring Trx redox dynamics in live cells, hindering a better understanding of physiological and pathological roles of the Trx redox system....

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.2417

    authors: Fan Y,Makar M,Wang MX,Ai HW

    更新日期:2017-09-01 00:00:00

  • Unifying principles of bifunctional, proximity-inducing small molecules.

    abstract::Nature uses a variety of tools to mediate the flow of information in cells, many of which control distances between key biomacromolecules. Researchers have thus generated compounds whose activities stem from interactions with two (or more) proteins simultaneously. In this Perspective, we describe how these 'bifunction...

    journal_title:Nature chemical biology

    pub_type: 杂志文章,评审

    doi:10.1038/s41589-020-0469-1

    authors: Gerry CJ,Schreiber SL

    更新日期:2020-04-01 00:00:00

  • Open access chemical and clinical probes to support drug discovery.

    abstract::Drug discovery resources in academia and industry are not used efficiently, to the detriment of industry and society. Duplication could be reduced, and productivity could be increased, by performing basic biology and clinical proofs of concept within open access industry-academia partnerships. Chemical biologists coul...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio0709-436

    authors: Edwards AM,Bountra C,Kerr DJ,Willson TM

    更新日期:2009-07-01 00:00:00

  • Mycobacterium tuberculosis nitrogen assimilation and host colonization require aspartate.

    abstract::Here we identify the amino acid transporter AnsP1 as the unique aspartate importer in the human pathogen Mycobacterium tuberculosis. Metabolomic analysis of a mutant with an inactive AnsP1 revealed that the transporter is essential for M. tuberculosis to assimilate nitrogen from aspartate. Virulence of the AnsP1 mutan...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.1355

    authors: Gouzy A,Larrouy-Maumus G,Wu TD,Peixoto A,Levillain F,Lugo-Villarino G,Guerquin-Kern JL,de Carvalho LP,Poquet Y,Neyrolles O

    更新日期:2013-11-01 00:00:00

  • Precise small-molecule recognition of a toxic CUG RNA repeat expansion.

    abstract::Excluding the ribosome and riboswitches, developing small molecules that selectively target RNA is a longstanding problem in chemical biology. A typical cellular RNA is difficult to target because it has little tertiary, but abundant secondary structure. We designed allele-selective compounds that target such an RNA, ...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.2251

    authors: Rzuczek SG,Colgan LA,Nakai Y,Cameron MD,Furling D,Yasuda R,Disney MD

    更新日期:2017-02-01 00:00:00

  • Genome-wide mutant profiling predicts the mechanism of a Lipid II binding antibiotic.

    abstract::Identifying targets of antibacterial compounds remains a challenging step in the development of antibiotics. We have developed a two-pronged functional genomics approach to predict mechanism of action that uses mutant fitness data from antibiotic-treated transposon libraries containing both upregulation and inactivati...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/s41589-018-0041-4

    authors: Santiago M,Lee W,Fayad AA,Coe KA,Rajagopal M,Do T,Hennessen F,Srisuknimit V,Müller R,Meredith TC,Walker S

    更新日期:2018-06-01 00:00:00

  • Nascent peptide assists the ribosome in recognizing chemically distinct small molecules.

    abstract::Regulation of gene expression in response to the changing environment is critical for cell survival. For instance, binding of macrolide antibiotics to the ribosome promotes translation arrest at the leader open reading frames ermCL and ermBL, which is necessary for inducing the antibiotic resistance genes ermC and erm...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.1998

    authors: Gupta P,Liu B,Klepacki D,Gupta V,Schulten K,Mankin AS,Vázquez-Laslop N

    更新日期:2016-03-01 00:00:00

  • Druggable sensors of the unfolded protein response.

    abstract::The inability of cells to properly fold, modify and assemble secretory and transmembrane proteins leads to accumulation of misfolded proteins in the endoplasmic reticulum (ER). Under these conditions of 'ER stress', cell survival depends on homeostatic benefits from an intracellular signaling pathway called the unfold...

    journal_title:Nature chemical biology

    pub_type: 杂志文章,评审

    doi:10.1038/nchembio.1664

    authors: Maly DJ,Papa FR

    更新日期:2014-11-01 00:00:00

  • Biased M1-muscarinic-receptor-mutant mice inform the design of next-generation drugs.

    abstract::Cholinesterase inhibitors, the current frontline symptomatic treatment for Alzheimer's disease (AD), are associated with low efficacy and adverse effects. M1 muscarinic acetylcholine receptors (M1 mAChRs) represent a potential alternate therapeutic target; however, drug discovery programs focused on this G protein-cou...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/s41589-019-0453-9

    authors: Bradley SJ,Molloy C,Valuskova P,Dwomoh L,Scarpa M,Rossi M,Finlayson L,Svensson KA,Chernet E,Barth VN,Gherbi K,Sykes DA,Wilson CA,Mistry R,Sexton PM,Christopoulos A,Mogg AJ,Rosethorne EM,Sakata S,John Challiss RA,B

    更新日期:2020-03-01 00:00:00

  • A photochemical snapshot of CD22 binding.

    abstract::Identification of endogenous glycan-binding ligands for cell-surface receptors has been difficult. Incorporation of a photoactive sialic acid analog into B-cell surface glycoproteins suggests that CD22 molecules may cluster by binding carbohydrate antigens on neighboring CD22 molecules. ...

    journal_title:Nature chemical biology

    pub_type: 评论,新闻

    doi:10.1038/nchembio0705-69

    authors: Yarema KJ,Sun Z

    更新日期:2005-07-01 00:00:00

  • Correlating chemical sensitivity and basal gene expression reveals mechanism of action.

    abstract::Changes in cellular gene expression in response to small-molecule or genetic perturbations have yielded signatures that can connect unknown mechanisms of action (MoA) to ones previously established. We hypothesized that differential basal gene expression could be correlated with patterns of small-molecule sensitivity ...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.1986

    authors: Rees MG,Seashore-Ludlow B,Cheah JH,Adams DJ,Price EV,Gill S,Javaid S,Coletti ME,Jones VL,Bodycombe NE,Soule CK,Alexander B,Li A,Montgomery P,Kotz JD,Hon CS,Munoz B,Liefeld T,Dančík V,Haber DA,Clish CB,Bittker JA

    更新日期:2016-02-01 00:00:00

  • An enzyme-coupled biosensor enables (S)-reticuline production in yeast from glucose.

    abstract::Benzylisoquinoline alkaloids (BIAs) are a diverse family of plant-specialized metabolites that include the pharmaceuticals codeine and morphine and their derivatives. Microbial synthesis of BIAs holds promise as an alternative to traditional crop-based manufacturing. Here we demonstrate the production of the key BIA i...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.1816

    authors: DeLoache WC,Russ ZN,Narcross L,Gonzales AM,Martin VJ,Dueber JE

    更新日期:2015-07-01 00:00:00

  • A bridge between chemistry and biology.

    abstract::Chemical biology is an interdisciplinary field that is undergoing rapid expansion around the globe. Recently, the Japanese Society for Chemical Biology sponsored its inaugural scientific meeting to discuss research at the interface of chemistry and biology. ...

    journal_title:Nature chemical biology

    pub_type:

    doi:10.1038/nchembio0806-392

    authors: Kikuchi K,Kakeya H

    更新日期:2006-08-01 00:00:00

  • An in vitro translation, selection and amplification system for peptide nucleic acids.

    abstract::Methods to evolve synthetic, rather than biological, polymers could significantly expand the functional potential of polymers that emerge from in vitro evolution. Requirements for synthetic polymer evolution include (i) sequence-specific polymerization of synthetic building blocks on an amplifiable template, (ii) disp...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.280

    authors: Brudno Y,Birnbaum ME,Kleiner RE,Liu DR

    更新日期:2010-02-01 00:00:00

  • Grand challenge commentary: RNA epigenetics?

    abstract::Post-transcriptional RNA modifications can be dynamic and might have functions beyond fine-tuning the structure and function of RNA. Understanding these RNA modification pathways and their functions may allow researchers to identify new layers of gene regulation at the RNA level. ...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.482

    authors: He C

    更新日期:2010-12-01 00:00:00

  • An intrinsically disordered entropic switch determines allostery in Phd-Doc regulation.

    abstract::Conditional cooperativity is a common mechanism involved in transcriptional regulation of prokaryotic type II toxin-antitoxin operons and is intricately related to bacterial persistence. It allows the toxin component of a toxin-antitoxin module to act as a co-repressor at low doses of toxin as compared to antitoxin. W...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.2078

    authors: Garcia-Pino A,De Gieter S,Talavera A,De Greve H,Efremov RG,Loris R

    更新日期:2016-07-01 00:00:00

  • Small-molecule activation of procaspase-3 to caspase-3 as a personalized anticancer strategy.

    abstract::Mutation and aberrant expression of apoptotic proteins are hallmarks of cancer. These changes prevent proapoptotic signals from being transmitted to executioner caspases, thereby averting apoptotic death and allowing cellular proliferation. Caspase-3 is the key executioner caspase, and it exists as an inactive zymogen...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio814

    authors: Putt KS,Chen GW,Pearson JM,Sandhorst JS,Hoagland MS,Kwon JT,Hwang SK,Jin H,Churchwell MI,Cho MH,Doerge DR,Helferich WG,Hergenrother PJ

    更新日期:2006-10-01 00:00:00

  • Using the pimeloyl-CoA synthetase adenylation fold to synthesize fatty acid thioesters.

    abstract::Biotin is an essential vitamin in plants and mammals, functioning as the carbon dioxide carrier within central lipid metabolism. Bacterial pimeloyl-CoA synthetase (BioW) acts as a highly specific substrate-selection gate, ensuring the integrity of the carbon chain in biotin synthesis. BioW catalyzes the condensation o...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.2361

    authors: Wang M,Moynié L,Harrison PJ,Kelly V,Piper A,Naismith JH,Campopiano DJ

    更新日期:2017-06-01 00:00:00

  • Insights into mucopolysaccharidosis I from the structure and action of α-L-iduronidase.

    abstract::Mucopolysaccharidosis type I (MPS I), caused by mutations in the gene encoding α-L-iduronidase (IDUA), is one of approximately 70 genetic disorders collectively known as the lysosomal storage diseases. To gain insight into the basis for MPS I, we crystallized human IDUA produced in an Arabidopsis thaliana cgl mutant. ...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.1357

    authors: Bie H,Yin J,He X,Kermode AR,Goddard-Borger ED,Withers SG,James MN

    更新日期:2013-11-01 00:00:00

  • Selective irreversible inhibition of a protease by targeting a noncatalytic cysteine.

    abstract::Designing selective inhibitors of proteases has proven problematic, in part because pharmacophores that confer potency exploit the conserved catalytic apparatus. We developed a fundamentally different approach by designing irreversible inhibitors that target noncatalytic cysteines that are structurally unique to a tar...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.492

    authors: Hagel M,Niu D,St Martin T,Sheets MP,Qiao L,Bernard H,Karp RM,Zhu Z,Labenski MT,Chaturvedi P,Nacht M,Westlin WF,Petter RC,Singh J

    更新日期:2011-01-01 00:00:00

  • Spatiotemporal modulation of biodiversity in a synthetic chemical-mediated ecosystem.

    abstract::Biodiversity, or the relative abundance of species, measures the persistence of an ecosystem. To better understand its modulation, we analyzed the spatial and temporal dynamics of a synthetic, chemical-mediated ecosystem that consisted of two engineered Escherichia coli populations. Depending on the specific experimen...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.244

    authors: Song H,Payne S,Gray M,You L

    更新日期:2009-12-01 00:00:00

  • Expanding chemical biology of 2-oxoglutarate oxygenases.

    abstract::Beyond established roles in collagen biosynthesis, hypoxic signaling and fatty acid metabolism, recent reports have now revealed roles for human 2-oxoglutarate-dependent oxygenases in histone and nucleic acid demethylation and in signaling protein hydroxylation. The emerging role of these oxygenases in enabling a mult...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio0308-152

    authors: Loenarz C,Schofield CJ

    更新日期:2008-03-01 00:00:00

  • Foldamers as versatile frameworks for the design and evolution of function.

    abstract::Foldamers are sequence-specific oligomers akin to peptides, proteins and oligonucleotides that fold into well-defined three-dimensional structures. They offer the chemical biologist a broad pallet of building blocks for the construction of molecules that test and extend our understanding of protein folding and functio...

    journal_title:Nature chemical biology

    pub_type: 杂志文章,评审

    doi:10.1038/nchembio876

    authors: Goodman CM,Choi S,Shandler S,DeGrado WF

    更新日期:2007-05-01 00:00:00

  • Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges.

    abstract::Naturally produced polybrominated diphenyl ethers (PBDEs) pervade the marine environment and structurally resemble toxic man-made brominated flame retardants. PBDEs bioaccumulate in marine animals and are likely transferred to the human food chain. However, the biogenic basis for PBDE production in one of their most p...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/nchembio.2330

    authors: Agarwal V,Blanton JM,Podell S,Taton A,Schorn MA,Busch J,Lin Z,Schmidt EW,Jensen PR,Paul VJ,Biggs JS,Golden JW,Allen EE,Moore BS

    更新日期:2017-05-01 00:00:00

  • Light-based control of metabolic flux through assembly of synthetic organelles.

    abstract::To maximize a desired product, metabolic engineers typically express enzymes to high, constant levels. Yet, permanent pathway activation can have undesirable consequences including competition with essential pathways and accumulation of toxic intermediates. Faced with similar challenges, natural metabolic systems comp...

    journal_title:Nature chemical biology

    pub_type: 杂志文章

    doi:10.1038/s41589-019-0284-8

    authors: Zhao EM,Suek N,Wilson MZ,Dine E,Pannucci NL,Gitai Z,Avalos JL,Toettcher JE

    更新日期:2019-06-01 00:00:00