Synthetic oligonucleotides recruit ILF2/3 to RNA transcripts to modulate splicing.

Abstract:

:We describe a new technology for recruiting specific proteins to RNA through selective recognition of heteroduplexes formed with chemically modified antisense oligonucleotides (ASOs). Typically, ASOs function by hybridizing to their RNA targets and blocking the binding of single-stranded RNA-binding proteins. Unexpectedly, we found that ASOs with 2'-deoxy-2'-fluoro (2'-F) nucleotides, but not with other 2' chemical modifications, have an additional property: they form heteroduplexes with RNA that are specifically recognized by the interleukin enhancer-binding factor 2 and 3 complex (ILF2/3). 2'-F ASO-directed recruitment of ILF2/3 to RNA can be harnessed to control gene expression by modulating alternative splicing of target transcripts. ILF2/3 recruitment to precursor mRNA near an exon results in omission of the exon from the mature mRNA, both in cell culture and in mice. We discuss the possibility of using chemically engineered ASOs that recruit specific proteins to modulate gene expression for therapeutic intervention.

journal_name

Nat Chem Biol

journal_title

Nature chemical biology

authors

Rigo F,Hua Y,Chun SJ,Prakash TP,Krainer AR,Bennett CF

doi

10.1038/nchembio.939

subject

Has Abstract

pub_date

2012-04-15 00:00:00

pages

555-61

issue

6

eissn

1552-4450

issn

1552-4469

pii

nchembio.939

journal_volume

8

pub_type

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